Experiment set5IT068 for Methanococcus maripaludis S2

Compare to:

Formate with nitrate 62.5 mM

200 most important genes:

  gene name fitness t score description  
MMP_RS02240 -5.8 -4.3 methanogenesis marker 7 protein compare
MMP_RS01175 -4.9 -5.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03445 -4.9 -1.3 methanogenesis marker 17 protein compare
MMP_RS05925 -4.5 -5.2 small nuclear ribonucleoprotein compare
MMP_RS01500 -4.5 -2.7 CBS domain-containing protein compare
MMP_RS01665 -4.4 -6.3 DUF2111 domain-containing protein compare
MMP_RS06165 -4.0 -14.2 ABC transporter permease compare
MMP_RS08300 -3.9 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS05920 -3.9 -1.0 50S ribosomal protein L37e compare
MMP_RS05460 -3.8 -16.0 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS03250 -3.8 -5.6 MJ1244 family protein compare
MMP_RS06170 -3.7 -12.1 ABC transporter ATP-binding protein compare
MMP_RS05250 -3.4 -2.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS06175 -3.3 -10.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS08745 -3.3 -9.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06480 -3.2 -10.6 ABC transporter substrate-binding protein compare
MMP_RS06350 -3.1 -10.3 HesA/MoeB/ThiF family protein compare
MMP_RS00185 -3.1 -20.2 potassium channel protein compare
MMP_RS08720 -3.1 -2.1 4Fe-4S binding protein compare
MMP_RS03400 -3.1 -3.5 archease compare
MMP_RS07765 -3.1 -15.4 sodium:alanine symporter family protein compare
MMP_RS00515 -3.0 -1.3 DUF655 domain-containing protein compare
MMP_RS06965 -3.0 -8.6 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS07600 -2.9 -3.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02900 -2.9 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01750 -2.9 -11.3 DUF63 family protein compare
MMP_RS03110 -2.9 -8.6 glycosyltransferase family 2 protein compare
MMP_RS05700 -2.9 -13.4 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS03960 -2.8 -1.0 hypothetical protein compare
MMP_RS04890 -2.8 -1.0 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS04780 -2.7 -3.3 ribonuclease P compare
MMP_RS07365 -2.7 -12.2 2-phosphoglycerate kinase compare
MMP_RS01800 -2.7 -4.9 TIGR00303 family protein compare
MMP_RS08820 -2.7 -7.6 hypothetical protein compare
MMP_RS06840 -2.7 -1.4 DNA-directed RNA polymerase subunit N compare
MMP_RS02110 -2.6 -2.5 hypothetical protein compare
MMP_RS01795 -2.5 -2.2 methanogenesis marker 6 protein compare
MMP_RS03080 -2.5 -3.4 universal stress protein compare
MMP_RS02280 -2.5 -1.3 DUF211 domain-containing protein compare
MMP_RS00685 -2.5 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06105 -2.5 -9.1 hydrogenase maturation peptidase HycI compare
MMP_RS06285 -2.4 -2.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07355 -2.3 -1.2 transcription factor S compare
MMP_RS05550 -2.3 -1.0 cation:proton antiporter compare
MMP_RS01385 -2.3 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06110 -2.3 -4.5 ATP-dependent protease LonB compare
MMP_RS08200 -2.2 -16.5 archaeosine synthase subunit alpha compare
MMP_RS01755 -2.2 -1.7 DUF2097 domain-containing protein compare
MMP_RS00915 -2.2 -7.5 DUF116 domain-containing protein compare
MMP_RS06625 -2.2 -2.6 DNA primase compare
MMP_RS07420 -2.2 -3.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03640 -2.2 -4.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02175 -2.2 -1.1 DUF1611 domain-containing protein compare
MMP_RS03315 -2.1 -1.6 ferrous iron transport protein A compare
MMP_RS06710 -2.1 -5.4 selenium-binding protein compare
MMP_RS06885 -2.1 -2.6 50S ribosome-binding GTPase compare
MMP_RS04605 -2.1 -2.5 cobalt ECF transporter T component CbiQ compare
MMP_RS04685 -2.1 -4.1 DUF126 domain-containing protein compare
MMP_RS03580 -2.1 -3.7 signal recognition particle-docking protein FtsY compare
MMP_RS03025 -2.1 -7.1 molybdenum cofactor guanylyltransferase compare
MMP_RS06400 -2.1 -1.9 4Fe-4S binding protein compare
MMP_RS00305 -2.0 -1.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS05430 -2.0 -4.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS01225 -2.0 -4.9 DUF5379 domain-containing protein compare
MMP_RS03600 -2.0 -2.2 triose-phosphate isomerase compare
MMP_RS05510 -2.0 -7.2 Rrf2 family transcriptional regulator compare
MMP_RS06630 -1.9 -1.2 UPF0058 family protein compare
MMP_RS00695 -1.9 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01155 -1.9 -6.0 XRE family transcriptional regulator compare
MMP_RS08195 -1.9 -8.5 hypothetical protein compare
MMP_RS00115 -1.9 -10.6 radical SAM protein compare
MMP_RS07350 -1.9 -2.8 preprotein translocase subunit Sec61beta compare
MMP_RS08460 -1.9 -1.7 proteasome-activating nucleotidase compare
MMP_RS02165 -1.8 -8.5 tRNA-dihydrouridine synthase compare
MMP_RS07380 -1.8 -2.6 transcription elongation factor Spt5 compare
MMP_RS07845 -1.8 -2.7 LL-diaminopimelate aminotransferase compare
MMP_RS08635 -1.8 -2.4 UbiA family prenyltransferase compare
MMP_RS01250 -1.8 -4.8 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS01005 -1.8 -1.6 riboflavin synthase compare
MMP_RS03435 -1.8 -2.2 ketol-acid reductoisomerase compare
MMP_RS06020 -1.8 -4.3 archaeoflavoprotein AfpA compare
MMP_RS00895 -1.8 -4.4 hypothetical protein compare
MMP_RS07545 -1.8 -1.4 HTH domain-containing protein compare
MMP_RS07635 -1.7 -6.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07385 -1.7 -3.2 protein translocase SEC61 complex subunit gamma compare
MMP_RS04775 -1.7 -3.8 adenosylhomocysteinase compare
MMP_RS07115 -1.7 -7.4 MBL fold metallo-hydrolase compare
MMP_RS04585 -1.6 -6.8 AIR synthase related protein compare
MMP_RS04955 -1.6 -5.8 DNA topoisomerase I compare
MMP_RS01495 -1.6 -9.2 TraB/GumN family protein compare
MMP_RS07330 -1.6 -11.8 membrane protein compare
MMP_RS07425 -1.6 -5.0 GTP-binding protein compare
MMP_RS06120 -1.6 -2.2 UPF0147 family protein compare
MMP_RS06730 -1.6 -2.2 phosphopantothenate/pantothenate synthetase compare
MMP_RS01020 -1.6 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07200 -1.6 -5.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01325 -1.5 -2.2 dihydroneopterin aldolase family protein compare
MMP_RS06700 -1.5 -10.2 hypothetical protein compare
MMP_RS02780 -1.5 -5.3 hypothetical protein compare
MMP_RS07775 -1.5 -6.7 alanine dehydrogenase compare
MMP_RS01030 -1.5 -3.8 MTAP family purine nucleoside phosphorylase compare
MMP_RS06035 -1.5 -6.2 glycosyltransferase family 2 protein compare
MMP_RS00735 -1.5 -3.2 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS07630 -1.5 -1.2 ATP-binding cassette domain-containing protein compare
MMP_RS05345 -1.4 -5.8 hypothetical protein compare
MMP_RS04620 -1.4 -4.3 cobalt transporter CbiM compare
MMP_RS06970 -1.4 -5.5 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS03555 -1.4 -5.4 transcriptional regulator compare
MMP_RS06685 -1.4 -7.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08210 -1.4 -2.2 phosphatidylglycerophosphatase A compare
MMP_RS05635 -1.4 -4.7 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS00300 -1.4 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06600 -1.3 -1.1 class III signal peptide-containing protein compare
MMP_RS08240 -1.3 -4.9 methanogenesis marker 16 metalloprotein compare
MMP_RS09020 -1.3 -1.4 hypothetical protein compare
MMP_RS06340 -1.3 -5.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08165 -1.3 -2.6 phosphoglycerate dehydrogenase compare
MMP_RS00730 -1.3 -4.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS03450 -1.3 -2.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS07345 -1.3 -4.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS03700 -1.3 -5.8 sodium:proton antiporter compare
MMP_RS06270 -1.3 -4.0 TIGR00300 family protein compare
MMP_RS06895 -1.2 -1.6 selenocysteine-specific translation elongation factor compare
MMP_RS08725 -1.2 -2.0 Ni/Fe hydrogenase subunit alpha compare
MMP_RS05285 -1.2 -3.6 MMPL family transporter compare
MMP_RS01265 -1.2 -1.7 hypothetical protein compare
MMP_RS03490 -1.2 -1.8 DUF2115 domain-containing protein compare
MMP_RS02225 -1.2 -6.3 carbohydrate kinase family protein compare
MMP_RS06475 -1.2 -3.7 FAD-dependent oxidoreductase compare
MMP_RS07900 -1.2 -2.4 YeeE/YedE family protein compare
MMP_RS08400 -1.2 -3.3 MJ0307 family thioredoxin compare
MMP_RS06680 -1.2 -8.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05110 -1.2 -6.1 16S ribosomal RNA methyltransferase A compare
MMP_RS06870 -1.2 -4.9 DedA family protein compare
MMP_RS00110 -1.2 -2.7 hypothetical protein compare
MMP_RS05020 -1.2 -3.3 hypothetical protein compare
MMP_RS06865 -1.1 -1.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03280 -1.1 -6.2 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS08580 -1.1 -3.6 flagellin compare
MMP_RS04615 -1.1 -1.8 PDGLE domain-containing protein compare
MMP_RS05580 -1.1 -7.1 glycosyltransferase compare
MMP_RS04480 -1.1 -8.2 lysine 2 3-aminomutase compare
MMP_RS06230 -1.1 -1.7 helix-turn-helix domain-containing protein compare
MMP_RS02145 -1.1 -4.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS03470 -1.1 -6.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08650 -1.1 -2.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS05245 -1.1 -6.5 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS01365 -1.1 -2.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03210 -1.1 -6.6 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS04850 -1.1 -7.7 UPF0254 family protein compare
MMP_RS01475 -1.1 -3.7 phosphosulfolactate synthase compare
MMP_RS06855 -1.0 -5.5 hypothetical protein compare
MMP_RS01380 -1.0 -2.9 PHP domain-containing protein compare
MMP_RS03305 -1.0 -3.9 winged helix-turn-helix domain-containing protein compare
MMP_RS05505 -1.0 -4.7 class IV adenylate cyclase compare
MMP_RS06295 -1.0 -4.2 methanogenesis marker 14 protein compare
MMP_RS00145 -1.0 -3.9 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS07185 -1.0 -5.4 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02100 -1.0 -3.1 metallophosphoesterase compare
MMP_RS01980 -1.0 -6.1 trimeric intracellular cation channel family protein compare
MMP_RS00725 -1.0 -5.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01885 -1.0 -3.4 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS02190 -1.0 -1.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS02875 -1.0 -4.2 chorismate pyruvate-lyase family protein compare
MMP_RS00455 -1.0 -4.4 orotate phosphoribosyltransferase-like protein compare
MMP_RS08940 -1.0 -1.0 MetS family NSS transporter small subunit compare
MMP_RS05140 -1.0 -1.4 helix-turn-helix transcriptional regulator compare
MMP_RS06925 -0.9 -1.8 ribonuclease VapC4 compare
MMP_RS07695 -0.9 -3.8 DUF3236 domain-containing protein compare
MMP_RS00950 -0.9 -3.3 site-2 protease family protein compare
MMP_RS01100 -0.9 -1.4 ABC transporter ATP-binding protein compare
MMP_RS03540 -0.9 -4.0 DUF2178 domain-containing protein compare
MMP_RS03440 -0.9 -0.9 MoaD/ThiS family protein compare
MMP_RS01675 -0.9 -1.2 hypothetical protein compare
MMP_RS05815 -0.9 -1.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS07580 -0.9 -1.3 DUF356 domain-containing protein compare
MMP_RS03300 -0.9 -0.7 TOBE domain-containing protein compare
MMP_RS02745 -0.9 -1.9 hypothetical protein compare
MMP_RS01085 -0.9 -1.3 hypothetical protein compare
MMP_RS07700 -0.9 -4.1 DUF1188 domain-containing protein compare
MMP_RS07755 -0.9 -0.8 DUF555 domain-containing protein compare
MMP_RS04485 -0.9 -6.6 putative beta-lysine N-acetyltransferase compare
MMP_RS00380 -0.9 -2.2 P-II family nitrogen regulator compare
MMP_RS03590 -0.8 -3.3 METTL5 family protein compare
MMP_RS01270 -0.8 -3.9 prepilin peptidase compare
MMP_RS03020 -0.8 -3.6 peptidylprolyl isomerase compare
MMP_RS01180 -0.8 -1.0 XTP/dITP diphosphatase compare
MMP_RS03115 -0.8 -5.9 hypothetical protein compare
MMP_RS08715 -0.8 -0.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01220 -0.8 -3.2 hypothetical protein compare
MMP_RS01780 -0.8 -2.8 TrmJ/YjtD family RNA methyltransferase compare
MMP_RS07840 -0.8 -2.1 ribonuclease III compare
MMP_RS07605 -0.8 -2.1 diadenylate cyclase compare
MMP_RS08290 -0.8 -3.1 DNA-binding protein Alba compare
MMP_RS05295 -0.8 -3.8 minichromosome maintenance protein MCM compare
MMP_RS00900 -0.8 -1.3 50S ribosomal protein L39e compare
MMP_RS00310 -0.7 -3.8 CBS domain-containing protein compare
MMP_RS08600 -0.7 -1.6 flagellar protein D compare
MMP_RS05440 -0.7 -4.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS03460 -0.7 -3.6 U32 family peptidase compare


Specific Phenotypes

For 10 genes in this experiment

For stress Sodium nitrate in Methanococcus maripaludis S2

For stress Sodium nitrate across organisms