Experiment set5IT067 for Rhodanobacter denitrificans FW104-10B01

Compare to:

D-Glucosamine Hydrochloride 20 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS07860 -4.5 -16.1 SIS domain-containing protein compare
LRK54_RS11450 -4.2 -10.7 transcriptional repressor AgaR compare
LRK54_RS01340 -4.0 -15.5 amidophosphoribosyltransferase compare
LRK54_RS03185 -3.9 -7.0 phosphoglycerate dehydrogenase compare
LRK54_RS10165 -3.9 -17.8 phosphoribosylamine--glycine ligase compare
LRK54_RS11375 -3.7 -8.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS02395 -3.6 -5.5 acetylornithine deacetylase compare
LRK54_RS16940 -3.6 -6.0 RNA polymerase sigma factor RpoE compare
LRK54_RS12625 -3.6 -17.4 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS16945 -3.6 -4.2 sigma-E factor negative regulatory protein compare
LRK54_RS11565 -3.5 -4.8 anthranilate phosphoribosyltransferase compare
LRK54_RS04625 -3.5 -15.1 serine hydroxymethyltransferase compare
LRK54_RS04260 -3.4 -7.8 pyrroline-5-carboxylate reductase compare
LRK54_RS04720 -3.3 -8.4 phosphoribosylformylglycinamidine synthase compare
LRK54_RS02390 -3.2 -10.6 acetylglutamate kinase compare
LRK54_RS10350 -3.2 -12.0 hypothetical protein compare
LRK54_RS02385 -3.2 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
LRK54_RS00305 -3.2 -13.1 asparagine synthase B compare
LRK54_RS04140 -3.2 -8.1 inositol-phosphate phosphatase compare
LRK54_RS06425 -3.2 -2.2 ribonucleoside-diphosphate reductase compare
LRK54_RS10320 -3.1 -7.7 dihydroxy-acid dehydratase compare
LRK54_RS12860 -3.1 -5.9 RNase adapter RapZ compare
LRK54_RS10335 -3.1 -14.9 3-isopropylmalate dehydratase large subunit compare
LRK54_RS10315 -3.1 -13.4 ketol-acid reductoisomerase compare
LRK54_RS00400 -3.1 -15.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS02400 -3.0 -9.4 argininosuccinate synthase compare
LRK54_RS12945 -3.0 -9.6 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS16615 -3.0 -2.9 phosphopyruvate hydratase compare
LRK54_RS05740 -3.0 -7.4 phosphoglycerate kinase compare
LRK54_RS11170 -3.0 -4.5 NADP-dependent malic enzyme compare
LRK54_RS10310 -3.0 -11.3 biosynthetic-type acetolactate synthase large subunit compare
LRK54_RS05785 -3.0 -9.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS01595 -2.9 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK54_RS10325 -2.9 -10.7 3-isopropylmalate dehydrogenase compare
LRK54_RS02415 -2.9 -13.8 N-acetylornithine carbamoyltransferase compare
LRK54_RS02380 -2.9 -9.0 argininosuccinate lyase compare
LRK54_RS12975 -2.9 -4.8 hemolysin family protein compare
LRK54_RS10345 -2.8 -8.8 2-isopropylmalate synthase compare
LRK54_RS12710 -2.8 -12.9 DNA starvation/stationary phase protection protein compare
LRK54_RS01600 -2.8 -13.1 histidinol-phosphate transaminase compare
LRK54_RS03290 -2.8 -2.7 RIP metalloprotease RseP compare
LRK54_RS10965 -2.8 -18.0 FAD-dependent oxidoreductase compare
LRK54_RS05980 -2.8 -1.9 ATP-binding protein compare
LRK54_RS13710 -2.8 -6.4 CBS domain-containing protein compare
LRK54_RS10960 -2.8 -22.3 glutamate synthase large subunit compare
LRK54_RS16755 -2.7 -6.5 SurA N-terminal domain-containing protein compare
LRK54_RS08595 -2.7 -10.7 shikimate dehydrogenase compare
LRK54_RS05990 -2.7 -10.9 hypothetical protein compare
LRK54_RS05985 -2.7 -1.9 response regulator transcription factor compare
LRK54_RS16735 -2.7 -16.4 endopeptidase La compare
LRK54_RS12200 -2.7 -9.7 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS11570 -2.6 -6.0 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS00670 -2.6 -7.1 OmpA family protein compare
LRK54_RS04585 -2.6 -8.9 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS16730 -2.6 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS01605 -2.6 -14.7 histidinol dehydrogenase compare
LRK54_RS01585 -2.6 -9.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS05200 -2.5 -4.0 hypothetical protein compare
LRK54_RS10340 -2.5 -14.0 branched-chain amino acid transaminase compare
LRK54_RS00635 -2.5 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS10330 -2.5 -3.7 3-isopropylmalate dehydratase small subunit compare
LRK54_RS03125 -2.5 -2.8 preprotein translocase subunit YajC compare
LRK54_RS13760 -2.4 -10.9 trypsin-like peptidase domain-containing protein compare
LRK54_RS06415 -2.4 -1.6 hypothetical protein compare
LRK54_RS04305 -2.4 -3.6 shikimate kinase compare
LRK54_RS01520 -2.4 -15.9 amino acid permease compare
LRK54_RS12030 -2.4 -11.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK54_RS10305 -2.4 -4.1 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS12075 -2.4 -18.1 phosphoenolpyruvate carboxylase compare
LRK54_RS01685 -2.4 -13.3 tryptophan synthase subunit beta compare
LRK54_RS01280 -2.4 -2.3 MBL fold metallo-hydrolase compare
LRK54_RS01680 -2.3 -8.1 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS02370 -2.3 -13.1 glutamate-5-semialdehyde dehydrogenase compare
LRK54_RS17505 -2.3 -5.1 preprotein translocase subunit SecG compare
LRK54_RS01575 -2.3 -10.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LRK54_RS01590 -2.3 -11.4 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS11290 -2.3 -2.7 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS01580 -2.3 -8.4 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS10360 -2.3 -5.3 homoserine kinase compare
LRK54_RS11975 -2.3 -7.7 SLC13 family permease compare
LRK54_RS09805 -2.3 -7.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS02855 -2.2 -6.9 type I restriction-modification system subunit M compare
LRK54_RS10355 -2.2 -3.6 threonine synthase compare
LRK54_RS06795 -2.2 -7.5 type II 3-dehydroquinate dehydratase compare
LRK54_RS00085 -2.2 -2.5 tetratricopeptide repeat protein compare
LRK54_RS05305 -2.2 -12.7 cystathionine gamma-synthase compare
LRK54_RS12865 -2.2 -10.1 HPr(Ser) kinase/phosphatase compare
LRK54_RS11560 -2.1 -4.3 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS00440 -2.1 -9.3 high frequency lysogenization protein HflD compare
LRK54_RS11415 -2.0 -13.4 anthranilate synthase component I compare
LRK54_RS08320 -2.0 -15.0 phenylalanine 4-monooxygenase compare
LRK54_RS15035 -2.0 -9.1 M48 family metalloprotease compare
LRK54_RS11175 -1.9 -7.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS01015 -1.9 -15.3 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK54_RS12460 -1.9 -3.7 hypothetical protein compare
LRK54_RS18050 -1.8 -12.9 lipopolysaccharide assembly protein LapB compare
LRK54_RS12855 -1.8 -5.2 PTS fructose transporter subunit IIA compare
LRK54_RS14670 -1.8 -3.0 NrsF family protein compare
LRK54_RS02180 -1.7 -7.7 UvrD-helicase domain-containing protein compare
LRK54_RS05550 -1.7 -2.8 FAD-binding protein compare
LRK54_RS01020 -1.7 -8.8 pha synthase subunit protein compare
LRK54_RS00905 -1.7 -6.9 cysteine synthase A compare
LRK54_RS05310 -1.7 -8.8 homoserine O-succinyltransferase compare
LRK54_RS14590 -1.7 -7.8 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS12295 -1.6 -4.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS16655 -1.6 -4.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS05500 -1.6 -2.7 hypothetical protein compare
LRK54_RS01610 -1.6 -3.7 ATP phosphoribosyltransferase compare
LRK54_RS02175 -1.6 -8.3 exodeoxyribonuclease V subunit gamma compare
LRK54_RS05415 -1.5 -8.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS07020 -1.5 -2.3 ABC transporter permease compare
LRK54_RS00650 -1.5 -12.9 L-threonine 3-dehydrogenase compare
LRK54_RS00660 -1.5 -11.7 glycine C-acetyltransferase compare
LRK54_RS00430 -1.5 -2.5 NUDIX hydrolase compare
LRK54_RS00915 -1.4 -8.8 LysR substrate-binding domain-containing protein compare
LRK54_RS07710 -1.4 -11.2 sugar MFS transporter conserved
LRK54_RS03110 -1.4 -8.6 nucleotidyltransferase family protein compare
LRK54_RS02185 -1.4 -4.4 exodeoxyribonuclease V subunit alpha compare
LRK54_RS02375 -1.4 -4.4 glutamate 5-kinase compare
LRK54_RS06840 -1.4 -12.1 DNA polymerase I compare
LRK54_RS17270 -1.3 -4.1 DNA translocase FtsK compare
LRK54_RS00080 -1.3 -6.5 helix-turn-helix domain-containing protein compare
LRK54_RS00675 -1.3 -8.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS15105 -1.2 -5.6 polynucleotide adenylyltransferase PcnB compare
LRK54_RS02895 -1.2 -9.2 rhomboid family intramembrane serine protease compare
LRK54_RS14800 -1.2 -2.4 cytochrome c compare
LRK54_RS04365 -1.2 -2.1 H-NS histone family protein compare
LRK54_RS04350 -1.2 -5.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS08625 -1.2 -10.4 exodeoxyribonuclease III compare
LRK54_RS11670 -1.2 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
LRK54_RS02570 -1.2 -8.8 SDR family oxidoreductase compare
LRK54_RS09280 -1.1 -11.2 TonB-dependent receptor compare
LRK54_RS03405 -1.1 -6.8 ribonuclease G compare
LRK54_RS06470 -1.1 -7.5 carboxy terminal-processing peptidase compare
LRK54_RS02460 -1.1 -7.3 phosphoglycolate phosphatase compare
LRK54_RS00395 -1.1 -2.9 prephenate dehydratase compare
LRK54_RS00690 -1.1 -8.2 2-methylcitrate synthase compare
LRK54_RS06785 -1.1 -1.9 protein-disulfide reductase DsbD compare
LRK54_RS07690 -1.1 -5.2 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein conserved
LRK54_RS15170 -1.1 -7.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK54_RS14980 -1.1 -6.2 recombinase RecA compare
LRK54_RS02440 -1.0 -1.8 RNA polymerase-binding protein DksA compare
LRK54_RS03105 -1.0 -7.8 phosphotransferase compare
LRK54_RS09200 -1.0 -7.9 MFS transporter compare
LRK54_RS08760 -1.0 -3.3 transaldolase compare
LRK54_RS07705 -1.0 -6.5 glucokinase compare
LRK54_RS00620 -1.0 -6.9 FtsH protease activity modulator HflK compare
LRK54_RS14825 -1.0 -4.3 protease HtpX compare
LRK54_RS16930 -0.9 -6.0 hypothetical protein compare
LRK54_RS06675 -0.9 -5.5 TetR/AcrR family transcriptional regulator compare
LRK54_RS09345 -0.9 -1.5 ATP-binding protein compare
LRK54_RS16660 -0.9 -6.3 VTT domain-containing protein compare
LRK54_RS03180 -0.9 -6.5 FAD-binding oxidoreductase compare
LRK54_RS00615 -0.9 -5.3 protease modulator HflC compare
LRK54_RS05300 -0.8 -2.8 homoserine dehydrogenase compare
LRK54_RS00695 -0.8 -3.6 methylisocitrate lyase compare
LRK54_RS02495 -0.8 -3.8 50S ribosomal protein L19 compare
LRK54_RS08930 -0.8 -3.2 XRE family transcriptional regulator compare
LRK54_RS09210 -0.8 -4.2 anhydro-N-acetylmuramic acid kinase compare
LRK54_RS17400 -0.8 -1.7 hypothetical protein compare
LRK54_RS02090 -0.8 -6.6 NAD-glutamate dehydrogenase compare
LRK54_RS11445 -0.8 -6.3 amidohydrolase family protein compare
LRK54_RS14775 -0.7 -4.9 cold-shock protein compare
LRK54_RS04765 -0.7 -5.3 LysR substrate-binding domain-containing protein compare
LRK54_RS14815 -0.7 -4.6 beta-ketoacyl-ACP reductase compare
LRK54_RS07310 -0.7 -5.4 pteridine reductase compare
LRK54_RS12670 -0.7 -4.6 glycosyltransferase compare
LRK54_RS16935 -0.7 -5.7 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS12005 -0.7 -4.1 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS06970 -0.7 -3.8 helix-turn-helix transcriptional regulator compare
LRK54_RS12300 -0.7 -3.0 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS04615 -0.7 -2.6 transcriptional regulator NrdR compare
LRK54_RS16955 -0.7 -5.2 translation elongation factor 4 compare
LRK54_RS07695 -0.7 -5.6 family 20 glycosylhydrolase compare
LRK54_RS16110 -0.7 -4.8 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS17900 -0.7 -1.6 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS10365 -0.7 -3.0 homoserine dehydrogenase compare
LRK54_RS07700 -0.6 -6.0 TonB-dependent receptor compare
LRK54_RS06420 -0.6 -1.2 hypothetical protein compare
LRK54_RS07830 -0.6 -5.7 TonB-dependent vitamin B12 receptor compare
LRK54_RS16050 -0.6 -0.7 tetratricopeptide repeat protein compare
LRK54_RS07980 -0.6 -1.5 nitrogen regulation protein NR(I) compare
LRK54_RS17060 -0.6 -2.0 RidA family protein compare
LRK54_RS16650 -0.6 -3.3 5'/3'-nucleotidase SurE compare
LRK54_RS06865 -0.6 -3.7 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS02070 -0.6 -2.7 acyl-CoA dehydrogenase family protein compare
LRK54_RS06755 -0.6 -5.2 LTA synthase family protein compare
LRK54_RS00910 -0.6 -3.4 siroheme synthase CysG compare
LRK54_RS02550 -0.6 -1.7 iron-sulfur cluster assembly accessory protein compare
LRK54_RS11800 -0.6 -4.8 RidA family protein compare
LRK54_RS11745 -0.6 -3.7 ribonuclease PH compare
LRK54_RS17810 -0.6 -2.9 broad-spectrum mercury transporter MerE compare
LRK54_RS08040 -0.6 -2.7 cation transporter compare
LRK54_RS14480 -0.5 -3.1 response regulator transcription factor compare
LRK54_RS03925 -0.5 -4.4 glycosyltransferase family 4 protein compare
LRK54_RS07570 -0.5 -1.4 monovalent cation/H(+) antiporter subunit G compare
LRK54_RS03710 -0.5 -3.7 tetratricopeptide repeat protein compare
LRK54_RS00575 -0.5 -1.1 hypothetical protein compare
LRK54_RS12665 -0.5 -3.8 autotransporter assembly complex protein TamA compare
LRK54_RS12940 -0.5 -3.8 phosphoribosylglycinamide formyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Rhodanobacter denitrificans FW104-10B01

For carbon source D-Glucosamine Hydrochloride across organisms