Experiment set5IT067 for Methanococcus maripaludis S2

Compare to:

Formate with nitrate 62.5 mM

200 most important genes:

  gene name fitness t score description  
MMP_RS02900 -4.4 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01795 -4.1 -1.9 methanogenesis marker 6 protein compare
MMP_RS02280 -3.3 -1.1 DUF211 domain-containing protein compare
MMP_RS03445 -3.3 -1.2 methanogenesis marker 17 protein compare
MMP_RS01175 -3.1 -5.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05460 -3.0 -12.9 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS03250 -2.9 -5.0 MJ1244 family protein compare
MMP_RS06170 -2.9 -11.5 ABC transporter ATP-binding protein compare
MMP_RS06165 -2.8 -13.5 ABC transporter permease compare
MMP_RS01500 -2.8 -2.6 CBS domain-containing protein compare
MMP_RS05925 -2.7 -5.2 small nuclear ribonucleoprotein compare
MMP_RS06840 -2.7 -1.3 DNA-directed RNA polymerase subunit N compare
MMP_RS01755 -2.7 -1.3 DUF2097 domain-containing protein compare
MMP_RS06480 -2.7 -10.0 ABC transporter substrate-binding protein compare
MMP_RS06350 -2.6 -8.2 HesA/MoeB/ThiF family protein compare
MMP_RS02240 -2.6 -4.1 methanogenesis marker 7 protein compare
MMP_RS00185 -2.6 -17.1 potassium channel protein compare
MMP_RS03960 -2.6 -0.9 hypothetical protein compare
MMP_RS05920 -2.6 -0.8 50S ribosomal protein L37e compare
MMP_RS01665 -2.5 -5.3 DUF2111 domain-containing protein compare
MMP_RS03080 -2.4 -3.3 universal stress protein compare
MMP_RS07600 -2.4 -2.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03315 -2.4 -1.4 ferrous iron transport protein A compare
MMP_RS08820 -2.3 -7.3 hypothetical protein compare
MMP_RS05700 -2.3 -11.5 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS07365 -2.2 -11.7 2-phosphoglycerate kinase compare
MMP_RS06630 -2.2 -1.0 UPF0058 family protein compare
MMP_RS07845 -2.2 -3.0 LL-diaminopimelate aminotransferase compare
MMP_RS01750 -2.2 -9.7 DUF63 family protein compare
MMP_RS04605 -2.2 -4.1 cobalt ECF transporter T component CbiQ compare
MMP_RS01800 -2.2 -3.8 TIGR00303 family protein compare
MMP_RS08745 -2.1 -6.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS04615 -2.1 -4.4 PDGLE domain-containing protein compare
MMP_RS06625 -2.1 -2.2 DNA primase compare
MMP_RS07765 -2.1 -10.7 sodium:alanine symporter family protein compare
MMP_RS07420 -2.0 -4.5 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06175 -2.0 -7.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS00300 -2.0 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03110 -2.0 -6.4 glycosyltransferase family 2 protein compare
MMP_RS06710 -2.0 -5.0 selenium-binding protein compare
MMP_RS05550 -1.9 -0.8 cation:proton antiporter compare
MMP_RS02110 -1.9 -2.1 hypothetical protein compare
MMP_RS06965 -1.9 -5.9 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS06120 -1.9 -1.9 UPF0147 family protein compare
MMP_RS03025 -1.8 -4.9 molybdenum cofactor guanylyltransferase compare
MMP_RS08635 -1.8 -1.9 UbiA family prenyltransferase compare
MMP_RS08200 -1.8 -12.9 archaeosine synthase subunit alpha compare
MMP_RS00915 -1.8 -6.5 DUF116 domain-containing protein compare
MMP_RS08300 -1.8 -1.2 metal-sulfur cluster assembly factor compare
MMP_RS04620 -1.8 -8.2 cobalt transporter CbiM compare
MMP_RS07385 -1.8 -2.8 protein translocase SEC61 complex subunit gamma compare
MMP_RS00735 -1.7 -3.4 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS04780 -1.7 -2.9 ribonuclease P compare
MMP_RS00895 -1.7 -3.6 hypothetical protein compare
MMP_RS07635 -1.7 -5.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03640 -1.6 -3.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07345 -1.6 -5.4 glycine synthesis protein GlyXL (from data) compare
MMP_RS05430 -1.6 -6.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS00115 -1.6 -9.6 radical SAM protein compare
MMP_RS08460 -1.5 -2.1 proteasome-activating nucleotidase compare
MMP_RS01155 -1.5 -4.9 XRE family transcriptional regulator compare
MMP_RS08650 -1.5 -2.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01265 -1.5 -3.0 hypothetical protein compare
MMP_RS02175 -1.5 -0.8 DUF1611 domain-containing protein compare
MMP_RS06110 -1.5 -2.6 ATP-dependent protease LonB compare
MMP_RS06035 -1.5 -7.0 glycosyltransferase family 2 protein compare
MMP_RS08940 -1.4 -1.1 MetS family NSS transporter small subunit compare
MMP_RS08195 -1.4 -7.6 hypothetical protein compare
MMP_RS04955 -1.4 -4.5 DNA topoisomerase I compare
MMP_RS00685 -1.4 -3.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05355 -1.4 -0.8 hypothetical protein compare
MMP_RS07355 -1.4 -0.9 transcription factor S compare
MMP_RS02875 -1.4 -6.2 chorismate pyruvate-lyase family protein compare
MMP_RS07115 -1.4 -5.5 MBL fold metallo-hydrolase compare
MMP_RS06600 -1.3 -1.1 class III signal peptide-containing protein compare
MMP_RS07330 -1.3 -9.6 membrane protein compare
MMP_RS06900 -1.3 -2.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08715 -1.3 -1.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07350 -1.3 -1.5 preprotein translocase subunit Sec61beta compare
MMP_RS06870 -1.3 -3.8 DedA family protein compare
MMP_RS07005 -1.3 -0.5 4Fe-4S binding protein compare
MMP_RS00725 -1.3 -4.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00730 -1.3 -3.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS02780 -1.3 -5.1 hypothetical protein compare
MMP_RS07425 -1.2 -4.7 GTP-binding protein compare
MMP_RS08725 -1.2 -1.9 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08720 -1.2 -1.2 4Fe-4S binding protein compare
MMP_RS01225 -1.2 -2.9 DUF5379 domain-containing protein compare
MMP_RS04585 -1.2 -5.8 AIR synthase related protein compare
MMP_RS07695 -1.2 -4.5 DUF3236 domain-containing protein compare
MMP_RS01495 -1.1 -4.6 TraB/GumN family protein compare
MMP_RS01720 -1.1 -1.3 replication factor C large subunit compare
MMP_RS01030 -1.1 -2.9 MTAP family purine nucleoside phosphorylase compare
MMP_RS01325 -1.1 -1.5 dihydroneopterin aldolase family protein compare
MMP_RS03450 -1.1 -1.8 glycine synthesis protein GlyXS (from data) compare
MMP_RS07200 -1.1 -4.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00695 -1.1 -0.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05975 -1.1 -1.2 hypothetical protein compare
MMP_RS07380 -1.1 -1.6 transcription elongation factor Spt5 compare
MMP_RS04850 -1.0 -7.9 UPF0254 family protein compare
MMP_RS03490 -1.0 -1.4 DUF2115 domain-containing protein compare
MMP_RS05815 -1.0 -1.5 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS02165 -1.0 -4.0 tRNA-dihydrouridine synthase compare
MMP_RS05580 -1.0 -7.0 glycosyltransferase compare
MMP_RS03580 -1.0 -2.2 signal recognition particle-docking protein FtsY compare
MMP_RS05265 -1.0 -1.7 2-isopropylmalate synthase compare
MMP_RS05285 -1.0 -3.7 MMPL family transporter compare
MMP_RS00145 -1.0 -3.3 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS07630 -1.0 -1.0 ATP-binding cassette domain-containing protein compare
MMP_RS08400 -1.0 -2.2 MJ0307 family thioredoxin compare
MMP_RS05510 -1.0 -3.7 Rrf2 family transcriptional regulator compare
MMP_RS01270 -1.0 -5.2 prepilin peptidase compare
MMP_RS06970 -1.0 -3.5 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS03485 -1.0 -2.6 TIGR00267 family protein compare
MMP_RS04685 -1.0 -1.7 DUF126 domain-containing protein compare
MMP_RS03600 -1.0 -1.2 triose-phosphate isomerase compare
MMP_RS06855 -1.0 -4.6 hypothetical protein compare
MMP_RS09020 -1.0 -0.9 hypothetical protein compare
MMP_RS02745 -1.0 -1.7 hypothetical protein compare
MMP_RS01385 -1.0 -0.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06285 -1.0 -1.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01250 -0.9 -2.3 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS03470 -0.9 -4.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05795 -0.9 -2.6 redox-regulated ATPase YchF compare
MMP_RS00110 -0.9 -1.5 hypothetical protein compare
MMP_RS08435 -0.9 -1.2 Era-like GTP-binding protein compare
MMP_RS00310 -0.9 -5.0 CBS domain-containing protein compare
MMP_RS07815 -0.9 -0.9 DUF2120 domain-containing protein compare
MMP_RS01335 -0.9 -1.5 prefoldin subunit beta compare
MMP_RS06295 -0.9 -3.9 methanogenesis marker 14 protein compare
MMP_RS04145 -0.9 -1.1 hypothetical protein compare
MMP_RS07700 -0.9 -4.0 DUF1188 domain-containing protein compare
MMP_RS08240 -0.9 -2.7 methanogenesis marker 16 metalloprotein compare
MMP_RS05110 -0.9 -3.8 16S ribosomal RNA methyltransferase A compare
MMP_RS03210 -0.8 -6.1 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS01475 -0.8 -3.1 phosphosulfolactate synthase compare
MMP_RS04305 -0.8 -1.5 hypothetical protein compare
MMP_RS06575 -0.8 -2.0 fluoride efflux transporter CrcB compare
MMP_RS04610 -0.8 -1.9 Dabb family protein compare
MMP_RS00155 -0.8 -3.3 heavy metal-binding domain-containing protein compare
MMP_RS02935 -0.8 -2.4 A24 family peptidase compare
MMP_RS03400 -0.8 -1.4 archease compare
MMP_RS01180 -0.8 -1.1 XTP/dITP diphosphatase compare
MMP_RS00515 -0.8 -0.6 DUF655 domain-containing protein compare
MMP_RS06020 -0.8 -2.3 archaeoflavoprotein AfpA compare
MMP_RS06895 -0.8 -0.8 selenocysteine-specific translation elongation factor compare
MMP_RS03535 -0.8 -1.8 helix-turn-helix transcriptional regulator compare
MMP_RS08430 -0.8 -3.3 HAD family hydrolase compare
MMP_RS07185 -0.8 -4.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08600 -0.8 -1.5 flagellar protein D compare
MMP_RS03305 -0.8 -3.0 winged helix-turn-helix domain-containing protein compare
MMP_RS06865 -0.8 -1.7 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06230 -0.8 -1.5 helix-turn-helix domain-containing protein compare
MMP_RS06400 -0.8 -1.0 4Fe-4S binding protein compare
MMP_RS02225 -0.8 -3.8 carbohydrate kinase family protein compare
MMP_RS08165 -0.8 -1.6 phosphoglycerate dehydrogenase compare
MMP_RS03020 -0.8 -2.6 peptidylprolyl isomerase compare
MMP_RS07840 -0.8 -1.6 ribonuclease III compare
MMP_RS01780 -0.8 -2.7 TrmJ/YjtD family RNA methyltransferase compare
MMP_RS00320 -0.8 -1.1 class I SAM-dependent methyltransferase compare
MMP_RS05250 -0.8 -0.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00380 -0.8 -1.7 P-II family nitrogen regulator compare
MMP_RS05140 -0.8 -0.9 helix-turn-helix transcriptional regulator compare
MMP_RS05635 -0.7 -2.5 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS04890 -0.7 -0.4 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS04480 -0.7 -5.4 lysine 2 3-aminomutase compare
MMP_RS05245 -0.7 -4.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00455 -0.7 -3.3 orotate phosphoribosyltransferase-like protein compare
MMP_RS01630 -0.7 -2.7 N-glycosylase/DNA lyase compare
MMP_RS03700 -0.7 -3.6 sodium:proton antiporter compare
MMP_RS00665 -0.7 -1.9 hypothetical protein compare
MMP_RS03300 -0.7 -0.5 TOBE domain-containing protein compare
MMP_RS00855 -0.7 -2.0 DUF367 family protein compare
MMP_RS03555 -0.7 -3.1 transcriptional regulator compare
MMP_RS05345 -0.7 -2.7 hypothetical protein compare
MMP_RS03115 -0.7 -4.3 hypothetical protein compare
MMP_RS07545 -0.7 -0.7 HTH domain-containing protein compare
MMP_RS01315 -0.7 -5.5 DUF2341 domain-containing protein compare
MMP_RS05985 -0.7 -1.4 hypothetical protein compare
MMP_RS07775 -0.7 -3.2 alanine dehydrogenase compare
MMP_RS02955 -0.7 -1.7 DJ-1/PfpI family protein compare
MMP_RS05845 -0.7 -0.7 tRNA-intron lyase compare
MMP_RS01365 -0.6 -1.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS07575 -0.6 -1.4 RNA ligase partner protein compare
MMP_RS01635 -0.6 -3.3 thiamine pyrophosphate-dependent enzyme compare
MMP_RS00950 -0.6 -2.7 site-2 protease family protein compare
MMP_RS01380 -0.6 -1.5 PHP domain-containing protein compare
MMP_RS05020 -0.6 -1.1 hypothetical protein compare
MMP_RS06190 -0.6 -2.2 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS05505 -0.6 -2.6 class IV adenylate cyclase compare
MMP_RS00655 -0.6 -1.3 hypothetical protein compare
MMP_RS08350 -0.6 -0.5 hypothetical protein compare
MMP_RS00545 -0.6 -1.9 XRE family transcriptional regulator compare
MMP_RS00315 -0.6 -1.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS04015 -0.6 -1.0 hypothetical protein compare
MMP_RS07640 -0.6 -3.2 mechanosensitive ion channel family protein compare
MMP_RS06275 -0.6 -3.2 ATP-dependent DNA helicase compare
MMP_RS06340 -0.6 -2.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS03245 -0.6 -1.5 DNA repair and recombination protein RadB compare
MMP_RS00035 -0.6 -3.1 DUF2098 family protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium nitrate in Methanococcus maripaludis S2

For stress Sodium nitrate across organisms