Experiment set5IT066 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -4.5 -2.2 NAD-dependent epimerase compare
IAI47_17560 -4.4 -2.2 ROK family transcriptional regulator compare
IAI47_11515 -4.2 -2.0 hypothetical protein compare
IAI47_11375 -3.9 -2.2 hypothetical protein compare
IAI47_10835 -3.5 -1.0 tRNA-Val compare
IAI47_05420 -3.4 -1.6 PTS glucose transporter subunit IIA compare
IAI47_00735 -3.2 -2.2 protein-export chaperone SecB compare
IAI47_09580 -3.1 -4.1 FNR family transcription factor compare
IAI47_07020 -2.9 -1.6 hypothetical protein compare
IAI47_09415 -2.7 -11.3 YcjX family protein compare
IAI47_13690 -2.6 -0.7 cell envelope integrity protein TolA compare
IAI47_11360 -2.6 -3.4 hypothetical protein compare
IAI47_15110 -2.5 -6.8 chromophore lyase compare
IAI47_18830 -2.4 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_05525 -2.3 -1.7 tRNA-Ala compare
IAI47_00760 -2.3 -4.5 envelope stress response regulator transcription factor CpxR compare
IAI47_15595 -2.2 -2.2 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_11760 -2.2 -1.3 TonB-dependent siderophore receptor compare
IAI47_16085 -2.1 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_00300 -2.1 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_18400 -2.1 -2.9 tyrosine recombinase XerC compare
IAI47_00875 -2.1 -1.5 met regulon transcriptional regulator MetJ compare
IAI47_10320 -2.1 -0.8 Rrf2 family transcriptional regulator compare
IAI47_08800 -2.0 -2.6 YoaH family protein compare
IAI47_07930 -2.0 -1.6 DUF2158 domain-containing protein compare
IAI47_16995 -2.0 -2.3 protein YrbN compare
IAI47_00430 -2.0 -12.4 DNA polymerase I compare
IAI47_21765 -2.0 -2.3 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_17185 -2.0 -7.3 RNA polymerase factor sigma-54 compare
IAI47_05195 -2.0 -2.7 DnaA inactivator Hda compare
IAI47_10415 -2.0 -5.1 ABC transporter permease compare
IAI47_11480 -1.9 -1.6 hypothetical protein compare
IAI47_08085 -1.9 -4.8 helix-turn-helix domain-containing protein compare
IAI47_13740 -1.9 -1.5 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_09420 -1.9 -7.4 TIGR01620 family protein compare
IAI47_11450 -1.8 -3.4 ankyrin repeat domain-containing protein compare
IAI47_04300 -1.8 -6.3 recombinase RecA compare
IAI47_03375 -1.8 -8.7 peptide chain release factor 3 compare
IAI47_07475 -1.8 -1.1 hypothetical protein compare
IAI47_10840 -1.8 -3.1 pyruvate kinase PykF compare
IAI47_06325 -1.8 -6.4 acetate kinase compare
IAI47_06655 -1.7 -2.8 1-phosphofructokinase compare
IAI47_00780 -1.7 -3.7 6-phosphofructokinase compare
IAI47_04335 -1.7 -3.0 tRNA-Arg compare
IAI47_02515 -1.7 -4.6 transcriptional regulator ArgR compare
IAI47_17255 -1.4 -1.8 DUF1043 family protein compare
IAI47_09630 -1.4 -3.8 type VI secretion system tube protein Hcp compare
IAI47_06320 -1.4 -4.7 phosphate acetyltransferase compare
IAI47_12880 -1.4 -9.2 formate C-acetyltransferase compare
IAI47_01825 -1.4 -7.1 two-component system sensor histidine kinase EnvZ compare
IAI47_08450 -1.4 -2.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_07525 -1.4 -2.3 conjugal transfer protein TraD compare
IAI47_14325 -1.3 -1.5 ribosome-associated protein YbcJ compare
IAI47_04835 -1.3 -6.1 ATP-dependent RNA helicase SrmB compare
IAI47_20595 -1.3 -2.6 GhoT/OrtT family toxin compare
IAI47_05035 -1.3 -2.3 nucleoside-diphosphate kinase compare
IAI47_13155 -1.3 -1.6 H-NS histone family protein compare
IAI47_02585 -1.3 -3.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_09635 -1.3 -2.8 hypothetical protein compare
IAI47_08710 -1.2 -4.5 protease HtpX compare
IAI47_16825 -1.2 -5.4 ribonuclease E inhibitor RraB compare
IAI47_11510 -1.2 -2.9 hypothetical protein compare
IAI47_01740 -1.2 -2.0 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_14945 -1.2 -2.7 pyrroline-5-carboxylate reductase compare
IAI47_20830 -1.2 -4.4 DUF2000 domain-containing protein compare
IAI47_01820 -1.2 -4.8 two-component system response regulator OmpR compare
IAI47_11470 -1.2 -2.5 IS1 family transposase compare
IAI47_04870 -1.2 -4.2 elongation factor 4 compare
IAI47_17120 -1.2 -1.9 BolA family iron metabolism protein IbaG compare
IAI47_06545 -1.1 -3.7 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_15810 -1.1 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_09345 -1.1 -3.8 LysR family transcriptional regulator compare
IAI47_09240 -1.1 -1.4 HTH-type transcriptional regulator CysB compare
IAI47_14775 -1.1 -2.4 transcriptional regulator NrdR compare
IAI47_06940 -1.1 -0.6 tyrosine-protein kinase Wzc compare
IAI47_07480 -1.1 -1.3 hypothetical protein compare
IAI47_13685 -1.1 -1.4 Tol-Pal system protein TolB compare
IAI47_03195 -1.0 -2.2 cell division protein FtsP compare
IAI47_04400 -1.0 -3.6 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_05155 -1.0 -7.1 polyphosphate kinase 1 compare
IAI47_00870 -1.0 -0.6 50S ribosomal protein L31 compare
IAI47_07955 -1.0 -1.5 protein DsrB compare
IAI47_07015 -1.0 -3.6 ABC transporter ATP-binding protein compare
IAI47_12885 -1.0 -3.5 pyruvate formate lyase 1-activating protein compare
IAI47_01120 -1.0 -4.9 manganese efflux pump MntP compare
IAI47_02035 -1.0 -2.4 YheV family putative metal-binding protein compare
IAI47_09055 -1.0 -4.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_05660 -1.0 -3.0 serine protease compare
IAI47_12925 -1.0 -2.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_20705 -1.0 -0.7 sulfur carrier protein ThiS compare
IAI47_21180 -1.0 -2.2 IS6 family transposase compare
IAI47_01545 -1.0 -3.3 cell division ATP-binding protein FtsE compare
IAI47_04750 -1.0 -1.7 hypothetical protein compare
IAI47_12760 -1.0 -5.4 porin OmpF compare
IAI47_09100 -0.9 -3.9 cardiolipin synthase compare
IAI47_09405 -0.9 -3.0 envelope stress response membrane protein PspC compare
IAI47_15605 -0.9 -0.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_17005 -0.9 -4.0 polyribonucleotide nucleotidyltransferase compare
IAI47_13760 -0.9 -1.6 succinate dehydrogenase membrane anchor subunit compare
IAI47_09990 -0.9 -2.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
IAI47_21675 -0.9 -2.5 helix-turn-helix domain-containing protein compare
IAI47_02090 -0.9 -2.3 elongation factor Tu compare
IAI47_14210 -0.9 -1.8 hypothetical protein compare
IAI47_13180 -0.9 -2.9 manganese-binding transcriptional regulator MntR compare
IAI47_20480 -0.9 -3.0 YfiR family protein compare
IAI47_10555 -0.9 -1.9 hypothetical protein compare
IAI47_10775 -0.9 -2.5 ribonuclease T compare
IAI47_04710 -0.9 -1.7 hypothetical protein compare
IAI47_10670 -0.9 -3.3 SDR family oxidoreductase compare
IAI47_11200 -0.9 -2.2 DotU family type IV/VI secretion system protein compare
IAI47_11500 -0.9 -1.4 type VI secretion system tip protein VgrG compare
IAI47_20065 -0.9 -1.8 YebG family protein compare
IAI47_14940 -0.9 -1.1 YaiI/YqxD family protein compare
IAI47_05830 -0.9 -1.7 hypothetical protein compare
IAI47_14785 -0.9 -2.7 DUF3251 domain-containing protein compare
IAI47_07890 -0.9 -1.7 DgsA anti-repressor MtfA compare
IAI47_21050 -0.9 -3.7 beta-lactamase family protein compare
IAI47_11655 -0.8 -1.0 hypothetical protein compare
IAI47_18215 -0.8 -0.8 Trk system potassium transporter TrkH compare
IAI47_11635 -0.8 -2.7 hypothetical protein compare
IAI47_20815 -0.8 -3.9 bacilysin biosynthesis protein BacA compare
IAI47_16405 -0.8 -2.1 siderophore-iron reductase FhuF compare
IAI47_07375 -0.8 -3.5 ABC transporter permease compare
IAI47_06300 -0.8 -3.0 histidine ABC transporter ATP-binding protein HisP compare
IAI47_09390 -0.8 -2.9 phage shock protein operon transcriptional activator compare
IAI47_21830 -0.8 -1.2 hypothetical protein compare
IAI47_09400 -0.8 -1.2 envelope stress response membrane protein PspB compare
IAI47_16990 -0.8 -2.2 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_08815 -0.8 -1.7 hypothetical protein compare
IAI47_20625 -0.8 -1.6 DUF2946 domain-containing protein compare
IAI47_08680 -0.8 -3.2 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_01365 -0.8 -1.0 inorganic phosphate transporter PitA compare
IAI47_08045 -0.8 -1.1 NUDIX domain-containing protein compare
IAI47_06120 -0.8 -1.4 YfcZ/YiiS family protein compare
IAI47_05745 -0.8 -0.7 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_02380 -0.8 -1.0 DNA-binding transcriptional regulator Fis compare
IAI47_10545 -0.8 -1.3 hypothetical protein compare
IAI47_10455 -0.8 -1.7 electron transport complex subunit RsxC compare
IAI47_18715 -0.8 -0.8 YibL family ribosome-associated protein compare
IAI47_19745 -0.8 -3.2 GNAT family N-acetyltransferase compare
IAI47_14545 -0.8 -2.1 hypothetical protein compare
IAI47_21530 -0.7 -2.3 FeoA domain-containing protein compare
IAI47_06140 -0.7 -2.8 endonuclease SmrB compare
IAI47_20375 -0.7 -2.9 TetR family transcriptional regulator compare
IAI47_09770 -0.7 -2.1 osmoprotectant ABC transporter permease OsmW compare
IAI47_09800 -0.7 -2.2 YnfA family protein compare
IAI47_06215 -0.7 -4.1 transcriptional regulator TctD compare
IAI47_13890 -0.7 -3.4 ROK family transcriptional regulator compare
IAI47_19490 -0.7 -2.4 DUF4102 domain-containing protein compare
IAI47_19365 -0.7 -2.2 DUF1471 domain-containing protein compare
IAI47_00120 -0.7 -2.8 sugar kinase compare
IAI47_14390 -0.7 -2.7 NfeD family protein compare
IAI47_09280 -0.7 -1.7 stress response translation initiation inhibitor YciH compare
IAI47_19865 -0.7 -2.8 ATP-binding cassette domain-containing protein compare
IAI47_04100 -0.7 -3.7 2-hydroxy-3-oxopropionate reductase compare
IAI47_10265 -0.7 -2.4 helix-turn-helix domain-containing protein compare
IAI47_11535 -0.7 -1.1 DcrB-related protein compare
IAI47_11545 -0.7 -1.2 hypothetical protein compare
IAI47_11475 -0.7 -0.6 hypothetical protein compare
IAI47_11415 -0.7 -0.7 hypothetical protein compare
IAI47_06040 -0.7 -1.7 DNA polymerase V compare
IAI47_20415 -0.7 -3.1 two-component system response regulator DcuR compare
IAI47_20540 -0.7 -1.9 TetR/AcrR family transcriptional regulator compare
IAI47_08730 -0.7 -1.8 YebO family protein compare
IAI47_07355 -0.7 -3.2 winged helix-turn-helix domain-containing protein compare
IAI47_07775 -0.7 -1.5 phosphonate C-P lyase system protein PhnK compare
IAI47_07700 -0.7 -1.7 EAL domain-containing protein compare
IAI47_06010 -0.7 -2.8 hypothetical protein compare
IAI47_16390 -0.7 -0.3 tRNA-Leu compare
IAI47_19295 -0.7 -0.9 hypothetical protein compare
IAI47_08055 -0.7 -2.7 lysis protein compare
IAI47_07070 -0.7 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_20550 -0.7 -1.9 ABC transporter permease compare
IAI47_18540 -0.7 -3.0 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_07450 -0.7 -1.0 winged helix-turn-helix domain-containing protein compare
IAI47_00465 -0.7 -1.2 ribosome-dependent GTPase TypA compare
IAI47_06900 -0.6 -1.4 phosphatase PAP2 family protein compare
IAI47_12875 -0.6 -2.6 formate transporter FocA compare
IAI47_17020 -0.6 -1.6 30S ribosome-binding factor RbfA compare
IAI47_14230 -0.6 -2.3 DotU family type IV/VI secretion system protein compare
IAI47_12260 -0.6 -1.5 hypothetical protein compare
IAI47_02040 -0.6 -2.9 peptidylprolyl isomerase compare
IAI47_07010 -0.6 -1.3 ABC transporter permease compare
IAI47_10050 -0.6 -1.0 hypothetical protein compare
IAI47_03240 -0.6 -1.5 TonB system transport protein ExbD compare
IAI47_17235 -0.6 -3.1 stringent starvation protein A compare
IAI47_11750 -0.6 -2.5 glyoxylate/hydroxypyruvate reductase GhrA compare
IAI47_11320 -0.6 -3.0 M55 family metallopeptidase compare
IAI47_16490 -0.6 -1.8 PTS sugar transporter subunit IIA compare
IAI47_16870 -0.6 -2.4 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_20330 -0.6 -2.1 LacI family DNA-binding transcriptional regulator compare
IAI47_02455 -0.6 -3.3 ribonuclease G compare
IAI47_14115 -0.6 -2.3 hypothetical protein compare
IAI47_10400 -0.6 -2.9 L-arabinose isomerase compare
IAI47_04425 -0.6 -3.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_10435 -0.6 -2.0 transcription modulator YdgT compare
IAI47_11395 -0.6 -1.8 hypothetical protein compare
IAI47_12030 -0.6 -3.7 PTS glucose transporter subunit IIBC compare
IAI47_13490 -0.6 -3.0 molybdenum cofactor biosynthesis protein B compare
IAI47_09510 -0.6 -2.1 YdbL family protein compare


Specific Phenotypes

For 3 genes in this experiment

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms