Experiment set5IT065 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Lomefloxacin hydrochloride 0.0005 mM

200 most detrimental genes:

  gene name fitness t score description  
AO356_04870 +8.7 45.8 TetR family transcriptional regulator compare
AO356_22095 +6.4 31.9 cupin compare
AO356_22910 +6.0 11.7 histidine kinase compare
AO356_16450 +4.6 20.2 GTP-binding protein compare
AO356_18595 +4.6 20.0 TetR family transcriptional regulator compare
AO356_16050 +4.5 14.6 glucose-6-phosphate isomerase compare
AO356_08890 +4.2 16.2 glycosyltransferase compare
AO356_15925 +4.2 20.1 ribosomal large subunit pseudouridine synthase D compare
AO356_08885 +3.5 13.7 hypothetical protein compare
AO356_08870 +3.3 13.6 polymerase compare
AO356_03375 +3.3 6.8 ExsB family protein compare
AO356_17485 +3.2 8.2 elongation factor 4 compare
AO356_03420 +3.1 16.9 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_08880 +3.0 14.1 glycosyl transferase compare
AO356_20475 +2.9 7.8 hypothetical protein compare
AO356_20175 +2.8 5.7 3-oxoacyl-ACP synthase compare
AO356_15290 +2.8 2.8 gamma-glutamyl phosphate reductase compare
AO356_20125 +2.8 17.1 23S rRNA pseudouridylate synthase compare
AO356_08590 +2.7 10.1 hypothetical protein compare
AO356_03365 +2.7 9.5 UDP-N-acetylglucosamine 2-epimerase compare
AO356_03380 +2.6 11.2 glycosyl amidation-associated protein WbuZ compare
AO356_10910 +2.5 13.1 tryptophan synthase subunit alpha compare
AO356_15200 +2.5 15.2 hypothetical protein compare
AO356_08585 +2.4 8.4 50S ribosomal protein L9 compare
AO356_14790 +2.4 12.1 MFS transporter compare
AO356_03355 +2.4 7.9 hypothetical protein compare
AO356_03360 +2.3 8.0 hypothetical protein compare
AO356_15305 +2.3 5.8 50S rRNA methyltransferase compare
AO356_22800 +2.3 13.0 glutathione reductase compare
AO356_18110 +2.2 10.6 amidase compare
AO356_13425 +2.2 6.0 hypothetical protein compare
AO356_09565 +2.2 14.1 glucan biosynthesis protein G compare
AO356_03385 +2.2 8.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_09560 +2.2 17.1 glucosyltransferase MdoH compare
AO356_20045 +2.1 8.5 ABC transporter compare
AO356_08660 +2.1 10.7 tRNA dimethylallyltransferase compare
AO356_29730 +2.1 3.1 MarR family transcriptional regulator compare
AO356_06690 +2.0 5.6 queuine tRNA-ribosyltransferase compare
AO356_03350 +1.9 9.0 glycosyl transferase compare
AO356_10185 +1.8 11.7 glutamate--cysteine ligase compare
AO356_20050 +1.8 11.7 hypothetical protein conserved
AO356_09765 +1.7 6.3 sulfurtransferase compare
AO356_19115 +1.7 10.7 peptidase P60 compare
AO356_03415 +1.7 9.3 oxidoreductase compare
AO356_09425 +1.7 9.9 malate dehydrogenase compare
AO356_12885 +1.7 10.5 hypothetical protein compare
AO356_18515 +1.6 2.4 pseudouridine synthase compare
AO356_02205 +1.6 3.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_03855 +1.6 11.8 AAA family ATPase compare
AO356_12170 +1.6 6.6 hypothetical protein compare
AO356_15530 +1.5 11.5 DEAD/DEAH box helicase conserved
AO356_04865 +1.5 5.7 hypothetical protein compare
AO356_04055 +1.5 4.0 hypothetical protein compare
AO356_14145 +1.5 8.2 transporter compare
AO356_05855 +1.5 5.8 pyocin R2, holin conserved
AO356_00575 +1.5 2.6 SCP-2 family sterol carrier protein compare
AO356_20155 +1.5 4.1 phosphate acyltransferase compare
AO356_22795 +1.5 1.7 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_27915 +1.5 2.8 salicylaldehyde dehydrogenase compare
AO356_29540 +1.4 2.1 transcriptional regulator compare
AO356_16170 +1.4 10.7 acetolactate synthase 3 catalytic subunit compare
AO356_14295 +1.4 3.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_24480 +1.4 6.0 hydroxyacylglutathione hydrolase conserved
AO356_21275 +1.4 2.5 peptidase compare
AO356_29590 +1.4 2.3 ester cyclase compare
AO356_25655 +1.4 2.2 TetR family transcriptional regulator compare
AO356_16175 +1.3 8.7 acetolactate synthase 3 regulatory subunit compare
AO356_22405 +1.3 3.1 hypothetical protein compare
AO356_03345 +1.3 7.6 hypothetical protein compare
AO356_17200 +1.3 9.1 histidine kinase compare
AO356_18915 +1.3 5.9 flagellar biosynthesis protein FlgB compare
AO356_21435 +1.3 3.8 pseudouridine synthase compare
AO356_28595 +1.3 2.9 transcriptional regulator compare
AO356_14140 +1.3 9.7 8-amino-7-oxononanoate synthase compare
AO356_25660 +1.3 2.2 MFS transporter compare
AO356_20785 +1.3 2.4 hypothetical protein compare
AO356_15735 +1.3 8.6 ABC transporter ATP-binding protein compare
AO356_09760 +1.3 3.6 glutaredoxin compare
AO356_02995 +1.3 4.2 hypothetical protein compare
AO356_19840 +1.3 5.4 histidine kinase compare
AO356_13570 +1.3 10.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_18730 +1.3 7.1 arginine N-succinyltransferase compare
AO356_24475 +1.3 8.4 lytic transglycosylase compare
AO356_18780 +1.2 1.8 carbon storage regulator compare
AO356_18070 +1.2 4.9 7-cyano-7-deazaguanine synthase compare
AO356_08290 +1.2 1.9 precorrin-6Y C5,15-methyltransferase compare
AO356_14150 +1.2 7.7 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_11515 +1.2 3.2 metal ABC transporter permease compare
AO356_20185 +1.2 7.0 aminodeoxychorismate lyase compare
AO356_14155 +1.2 7.9 dethiobiotin synthetase compare
AO356_25795 +1.2 1.8 transglutaminase compare
AO356_03410 +1.2 7.4 acetyltransferase compare
AO356_13475 +1.2 6.5 glutathione synthetase compare
AO356_12945 +1.2 3.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_12715 +1.2 4.0 hypothetical protein compare
AO356_25530 +1.2 1.5 LuxR family transcriptional regulator compare
AO356_27765 +1.1 2.7 hypothetical protein compare
AO356_02485 +1.1 3.2 transcriptional regulator compare
AO356_01840 +1.1 0.9 uracil permease compare
AO356_09835 +1.1 5.2 iron transporter compare
AO356_21465 +1.1 3.5 amidophosphoribosyltransferase compare
AO356_12900 +1.1 4.5 exopolyphosphatase compare
AO356_13390 +1.1 6.5 coproporphyrinogen III oxidase conserved
AO356_25830 +1.1 2.1 DNA repair protein compare
AO356_06745 +1.1 4.1 DNA-binding protein compare
AO356_22675 +1.1 1.3 sulfate transporter compare
AO356_13600 +1.1 8.3 hypothetical protein compare
AO356_08665 +1.1 7.2 DNA mismatch repair protein compare
AO356_14135 +1.1 8.9 biotin synthase compare
AO356_20465 +1.1 3.6 transcriptional regulator compare
AO356_13395 +1.1 1.9 non-canonical purine NTP pyrophosphatase compare
AO356_06695 +1.1 5.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_19835 +1.1 2.0 histidine kinase compare
AO356_27485 +1.0 1.9 hypothetical protein compare
AO356_03400 +1.0 4.7 aminotransferase DegT compare
AO356_08300 +1.0 4.2 cobalt-precorrin-6X reductase compare
AO356_03905 +1.0 5.8 flagellar biosynthesis protein FlgK compare
AO356_02445 +1.0 1.4 prevent-host-death protein compare
AO356_11810 +1.0 5.7 glycosyl transferase compare
AO356_25110 +1.0 0.8 protein DnrP compare
AO356_29120 +1.0 3.5 vanillate monooxygenase compare
AO356_26740 +1.0 1.4 succinate-semialdehyde dehydrogenase compare
AO356_19515 +1.0 1.8 hypothetical protein compare
AO356_01915 +1.0 1.9 hypothetical protein compare
AO356_09570 +1.0 3.0 D-tyrosyl-tRNA(Tyr) deacylase compare
AO356_28440 +1.0 1.3 galactose 1-dehydrogenase compare
AO356_03920 +1.0 5.3 flagellar basal body L-ring protein compare
AO356_17020 +1.0 4.9 cytochrome D ubiquinol oxidase subunit III compare
AO356_06065 +1.0 1.8 ArsC family transcriptional regulator compare
AO356_17345 +1.0 1.9 molybdenum cofactor biosynthesis protein MoaE compare
AO356_00935 +1.0 2.0 hypothetical protein compare
AO356_07090 +1.0 2.2 hypothetical protein compare
AO356_00785 +1.0 2.4 polysaccharide synthesis protein GtrA compare
AO356_26845 +1.0 2.0 hypothetical protein compare
AO356_26180 +1.0 2.0 hypothetical protein compare
AO356_01955 +1.0 2.7 hypothetical protein compare
AO356_23645 +0.9 0.9 hypothetical protein compare
AO356_03430 +0.9 2.8 hypothetical protein compare
AO356_19150 +0.9 4.3 cobalamin biosynthesis protein CobD compare
AO356_16185 +0.9 3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_30265 +0.9 2.3 cupin compare
AO356_25410 +0.9 2.5 LysR family transcriptional regulator compare
AO356_16095 +0.9 4.3 molecular chaperone DnaK compare
AO356_10215 +0.9 4.1 transcriptional regulator compare
AO356_06605 +0.9 2.0 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_01050 +0.9 6.5 hypothetical protein compare
AO356_18920 +0.9 4.5 flagellar basal-body rod protein FlgC compare
AO356_29105 +0.9 1.4 fumarylacetoacetate hydrolase compare
AO356_28975 +0.9 2.7 alkanesulfonate monooxygenase compare
AO356_28675 +0.9 1.3 glycosyl hydrolase compare
AO356_02315 +0.9 2.8 DNA topoisomerase I compare
AO356_12905 +0.9 1.1 amino acid ABC transporter ATP-binding protein compare
AO356_12140 +0.9 1.0 type VI secretion protein compare
AO356_15815 +0.9 1.2 gamma-glutamyl kinase compare
AO356_08160 +0.9 2.5 translation initiation factor Sui1 compare
AO356_05275 +0.9 2.9 ornithine carbamoyltransferase compare
AO356_18805 +0.9 1.0 magnesium transporter compare
AO356_26360 +0.9 1.6 enoyl-CoA hydratase compare
AO356_04815 +0.9 1.7 hypothetical protein compare
AO356_19285 +0.9 1.1 tRNA-Asp compare
AO356_08385 +0.9 1.7 urease subunit beta compare
AO356_13210 +0.9 3.9 hypothetical protein compare
AO356_08670 +0.9 1.1 N-acetylmuramoyl-L-alanine amidase compare
AO356_19120 +0.8 4.3 peptidase P60 compare
AO356_27000 +0.8 3.2 hypothetical protein compare
AO356_10140 +0.8 6.2 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_00325 +0.8 6.3 RNA helicase compare
AO356_09850 +0.8 2.2 hypothetical protein compare
AO356_01985 +0.8 0.8 head completion/stabilization protein compare
AO356_26440 +0.8 2.6 TetR family transcriptional regulator compare
AO356_17025 +0.8 3.2 alpha/beta hydrolase compare
AO356_07400 +0.8 3.9 pseudouridine synthase compare
AO356_18725 +0.8 3.2 acetylornithine aminotransferase compare
AO356_21835 +0.8 1.6 glyoxalase compare
AO356_22775 +0.8 1.9 hypothetical protein compare
AO356_17035 +0.8 3.8 ATPase compare
AO356_08955 +0.8 4.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_28740 +0.8 1.3 oxidoreductase compare
AO356_21430 +0.8 4.6 peptidoglycan-binding protein compare
AO356_19160 +0.8 4.1 cobyric acid synthase compare
AO356_11315 +0.8 1.9 shikimate dehydrogenase compare
AO356_30370 +0.8 2.1 CoA-binding protein compare
AO356_17520 +0.8 0.9 phosphoribosylformylglycinamidine synthase compare
AO356_15690 +0.8 2.4 carbon starvation protein A compare
AO356_03535 +0.8 2.8 BolA family transcriptional regulator compare
AO356_08705 +0.8 5.2 flagellar motor protein MotB compare
AO356_03785 +0.8 4.3 flagellar motor switch protein FliM compare
AO356_17255 +0.8 2.0 multidrug transporter compare
AO356_18065 +0.8 1.6 7-carboxy-7-deazaguanine synthase compare
AO356_13485 +0.8 1.9 chemotaxis protein CheY compare
AO356_26595 +0.8 1.7 antibiotic biosynthesis monooxygenase compare
AO356_07390 +0.8 0.9 polyribonucleotide nucleotidyltransferase compare
AO356_19060 +0.8 5.3 (p)ppGpp synthetase compare
AO356_08280 +0.8 2.1 oxidoreductase compare
AO356_19170 +0.8 2.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_01685 +0.8 3.5 type IV secretion protein Rhs compare
AO356_13865 +0.8 3.1 hypothetical protein compare
AO356_02745 +0.8 2.1 transcriptional regulator compare
AO356_04810 +0.8 2.7 phospholipase compare
AO356_12165 +0.8 2.1 type VI secretion protein compare


Specific Phenotypes

For 32 genes in this experiment

For stress Lomefloxacin hydrochloride in Pseudomonas fluorescens FW300-N2C3

For stress Lomefloxacin hydrochloride across organisms