Experiment set5IT065 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -4.8 -2.5 NAD-dependent epimerase compare
IAI47_10835 -3.6 -1.1 tRNA-Val compare
IAI47_09415 -3.5 -11.8 YcjX family protein compare
IAI47_06655 -3.3 -3.9 1-phosphofructokinase compare
IAI47_05070 -3.1 -0.9 outer membrane protein assembly factor BamB compare
IAI47_18400 -3.0 -2.9 tyrosine recombinase XerC compare
IAI47_07020 -3.0 -1.8 hypothetical protein compare
IAI47_15025 -3.0 -3.4 transcriptional regulator LldR compare
IAI47_05195 -2.9 -3.4 DnaA inactivator Hda compare
IAI47_08045 -2.8 -2.9 NUDIX domain-containing protein compare
IAI47_09400 -2.8 -4.6 envelope stress response membrane protein PspB compare
IAI47_17560 -2.7 -2.0 ROK family transcriptional regulator compare
IAI47_21665 -2.6 -2.9 DUF333 domain-containing protein compare
IAI47_09580 -2.6 -4.8 FNR family transcription factor compare
IAI47_09360 -2.6 -1.5 peptide ABC transporter ATP-binding protein SapF compare
IAI47_14470 -2.6 -3.3 YbaB/EbfC family nucleoid-associated protein compare
IAI47_09420 -2.5 -10.0 TIGR01620 family protein compare
IAI47_18830 -2.5 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04835 -2.4 -8.0 ATP-dependent RNA helicase SrmB compare
IAI47_08085 -2.4 -6.3 helix-turn-helix domain-containing protein compare
IAI47_08440 -2.4 -2.2 crossover junction endodeoxyribonuclease RuvC compare
IAI47_00300 -2.3 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_04300 -2.3 -7.2 recombinase RecA compare
IAI47_15970 -2.2 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_09235 -2.2 -1.3 type I DNA topoisomerase compare
IAI47_12885 -2.1 -8.0 pyruvate formate lyase 1-activating protein compare
IAI47_04800 -2.0 -1.2 RnfH family protein compare
IAI47_06320 -2.0 -7.8 phosphate acetyltransferase compare
IAI47_15595 -1.9 -2.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_00430 -1.9 -12.3 DNA polymerase I compare
IAI47_04870 -1.9 -6.1 elongation factor 4 compare
IAI47_09395 -1.8 -2.8 phage shock protein PspA compare
IAI47_01820 -1.8 -8.7 two-component system response regulator OmpR compare
IAI47_09100 -1.8 -8.1 cardiolipin synthase compare
IAI47_11415 -1.8 -1.4 hypothetical protein compare
IAI47_09635 -1.8 -4.4 hypothetical protein compare
IAI47_07475 -1.8 -1.1 hypothetical protein compare
IAI47_09055 -1.7 -8.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_10545 -1.7 -2.5 hypothetical protein compare
IAI47_18145 -1.7 -2.1 elongation factor Tu compare
IAI47_11375 -1.7 -1.2 hypothetical protein compare
IAI47_11425 -1.7 -4.2 hypothetical protein compare
IAI47_17185 -1.7 -5.6 RNA polymerase factor sigma-54 compare
IAI47_13065 -1.7 -1.7 DUF1418 family protein compare
IAI47_07885 -1.7 -1.2 tRNA-Asn compare
IAI47_15600 -1.7 -2.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_03375 -1.6 -8.5 peptide chain release factor 3 compare
IAI47_07010 -1.6 -2.7 ABC transporter permease compare
IAI47_00760 -1.6 -3.2 envelope stress response regulator transcription factor CpxR compare
IAI47_11480 -1.6 -1.8 hypothetical protein compare
IAI47_06325 -1.6 -5.7 acetate kinase compare
IAI47_18840 -1.5 -3.4 membrane protein insertion efficiency factor YidD compare
IAI47_04865 -1.5 -1.5 SoxR-reducing system protein RseC compare
IAI47_13935 -1.5 -1.2 tRNA-Gln compare
IAI47_09390 -1.5 -5.9 phage shock protein operon transcriptional activator compare
IAI47_07015 -1.5 -4.8 ABC transporter ATP-binding protein compare
IAI47_04400 -1.5 -4.1 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_09405 -1.5 -5.3 envelope stress response membrane protein PspC compare
IAI47_17020 -1.5 -2.6 30S ribosome-binding factor RbfA compare
IAI47_07905 -1.5 -0.6 Arc family DNA-binding protein compare
IAI47_12880 -1.5 -8.8 formate C-acetyltransferase compare
IAI47_13180 -1.5 -5.0 manganese-binding transcriptional regulator MntR compare
IAI47_16085 -1.4 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_00780 -1.4 -3.9 6-phosphofructokinase compare
IAI47_16995 -1.4 -1.4 protein YrbN compare
IAI47_17035 -1.4 -2.4 ribosome maturation factor RimP compare
IAI47_11535 -1.3 -1.5 DcrB-related protein compare
IAI47_11445 -1.3 -4.5 ankyrin repeat domain-containing protein compare
IAI47_05325 -1.3 -2.4 DUF1471 domain-containing protein compare
IAI47_19325 -1.3 -3.1 transposase compare
IAI47_13050 -1.3 -3.8 YbjN domain-containing protein compare
IAI47_10840 -1.3 -3.1 pyruvate kinase PykF compare
IAI47_01825 -1.3 -7.3 two-component system sensor histidine kinase EnvZ compare
IAI47_13690 -1.3 -0.5 cell envelope integrity protein TolA compare
IAI47_07490 -1.3 -2.1 DNA-binding protein compare
IAI47_19945 -1.3 -0.7 hypothetical protein compare
IAI47_03240 -1.2 -3.2 TonB system transport protein ExbD compare
IAI47_18215 -1.2 -1.0 Trk system potassium transporter TrkH compare
IAI47_20905 -1.2 -2.6 PTS transporter subunit EIIB compare
IAI47_18240 -1.2 -1.9 NAD(P)H-flavin reductase compare
IAI47_04335 -1.2 -2.1 tRNA-Arg compare
IAI47_00875 -1.1 -1.7 met regulon transcriptional regulator MetJ compare
IAI47_02090 -1.1 -3.2 elongation factor Tu compare
IAI47_02585 -1.1 -2.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_17900 -1.1 -1.1 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_16670 -1.1 -3.1 stress protein compare
IAI47_08445 -1.1 -0.9 Holliday junction branch migration protein RuvA compare
IAI47_05035 -1.1 -2.1 nucleoside-diphosphate kinase compare
IAI47_11360 -1.1 -1.8 hypothetical protein compare
IAI47_14295 -1.1 -2.1 hypothetical protein compare
IAI47_13950 -1.1 -0.9 PhoH family protein compare
IAI47_11510 -1.1 -4.2 hypothetical protein compare
IAI47_13195 -1.1 -5.0 DNA starvation/stationary phase protection protein Dps compare
IAI47_04925 -1.1 -7.5 membrane-bound lytic murein transglycosylase MltF compare
IAI47_21765 -1.1 -1.4 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_08800 -1.1 -2.3 YoaH family protein compare
IAI47_07485 -1.1 -2.4 DUF4756 family protein compare
IAI47_06190 -1.1 -4.1 rhodanese compare
IAI47_10290 -1.0 -3.1 barstar family protein compare
IAI47_18490 -1.0 -2.8 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_09625 -1.0 -3.6 transporter substrate-binding domain-containing protein compare
IAI47_07515 -1.0 -2.4 hypothetical protein compare
IAI47_16405 -1.0 -2.8 siderophore-iron reductase FhuF compare
IAI47_18735 -1.0 -3.3 DeoR/GlpR transcriptional regulator compare
IAI47_14940 -1.0 -1.4 YaiI/YqxD family protein compare
IAI47_05305 -1.0 -3.2 ArsC family reductase compare
IAI47_15810 -1.0 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_04505 -1.0 -4.3 transcriptional repressor MprA compare
IAI47_19550 -1.0 -1.0 DUF1471 domain-containing protein compare
IAI47_19785 -1.0 -3.0 DUF1232 domain-containing protein compare
IAI47_20155 -1.0 -3.4 molybdate ABC transporter substrate-binding protein compare
IAI47_05425 -1.0 -3.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_11540 -1.0 -2.4 type VI secretion system tip protein VgrG compare
IAI47_11760 -1.0 -1.0 TonB-dependent siderophore receptor compare
IAI47_12760 -1.0 -5.3 porin OmpF compare
IAI47_15110 -1.0 -3.0 chromophore lyase compare
IAI47_08065 -1.0 -3.7 acyltransferase compare
IAI47_01475 -0.9 -4.3 MurR/RpiR family transcriptional regulator compare
IAI47_17415 -0.9 -3.8 DUF3304 domain-containing protein compare
IAI47_03820 -0.9 -2.5 site-specific tyrosine recombinase XerD compare
IAI47_13760 -0.9 -1.5 succinate dehydrogenase membrane anchor subunit compare
IAI47_13765 -0.9 -1.4 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_05155 -0.9 -6.1 polyphosphate kinase 1 compare
IAI47_21880 -0.9 -0.5 ParA family protein compare
IAI47_16930 -0.9 -3.4 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_09305 -0.9 -2.0 cyclic di-GMP phosphodiesterase compare
IAI47_01780 -0.9 -1.7 Fe-S biogenesis protein NfuA compare
IAI47_01750 -0.9 -3.3 glycerol-3-phosphate dehydrogenase compare
IAI47_17005 -0.9 -4.1 polyribonucleotide nucleotidyltransferase compare
IAI47_19930 -0.9 -3.5 adhesin compare
IAI47_17120 -0.9 -1.5 BolA family iron metabolism protein IbaG compare
IAI47_01120 -0.9 -4.8 manganese efflux pump MntP compare
IAI47_18480 -0.9 -4.6 lipid III flippase WzxE compare
IAI47_01545 -0.9 -2.6 cell division ATP-binding protein FtsE compare
IAI47_11850 -0.8 -2.3 hypothetical protein compare
IAI47_19050 -0.8 -1.7 hypothetical protein compare
IAI47_17255 -0.8 -1.3 DUF1043 family protein compare
IAI47_09215 -0.8 -3.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
IAI47_10225 -0.8 -2.2 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_06900 -0.8 -2.4 phosphatase PAP2 family protein compare
IAI47_17235 -0.8 -4.7 stringent starvation protein A compare
IAI47_11310 -0.8 -1.9 redox-regulated ATPase YchF compare
IAI47_10340 -0.8 -3.8 mannose-6-phosphate isomerase compare
IAI47_05765 -0.8 -1.0 hypothetical protein compare
IAI47_21505 -0.8 -3.4 DUF2256 domain-containing protein compare
IAI47_14325 -0.8 -0.8 ribosome-associated protein YbcJ compare
IAI47_09300 -0.8 -2.9 crotonase/enoyl-CoA hydratase family protein compare
IAI47_01530 -0.8 -4.0 DUF1145 family protein compare
IAI47_16600 -0.8 -1.3 tRNA-OTHER compare
IAI47_08510 -0.8 -3.5 DUF533 domain-containing protein compare
IAI47_03680 -0.8 -5.0 transketolase compare
IAI47_10790 -0.8 -2.0 YnhF family membrane protein compare
IAI47_09210 -0.8 -2.8 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_07890 -0.8 -1.9 DgsA anti-repressor MtfA compare
IAI47_20540 -0.8 -2.2 TetR/AcrR family transcriptional regulator compare
IAI47_14210 -0.8 -2.1 hypothetical protein compare
IAI47_19380 -0.8 -2.8 hypothetical protein compare
IAI47_21780 -0.8 -2.4 hypothetical protein compare
IAI47_02380 -0.8 -1.0 DNA-binding transcriptional regulator Fis compare
IAI47_12175 -0.8 -1.9 anti-sigma-28 factor FlgM compare
IAI47_14275 -0.8 -2.7 GPW/gp25 family protein compare
IAI47_00465 -0.8 -1.3 ribosome-dependent GTPase TypA compare
IAI47_01535 -0.8 -2.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_09895 -0.8 -2.4 GNAT family N-acetyltransferase compare
IAI47_07525 -0.8 -1.4 conjugal transfer protein TraD compare
IAI47_20595 -0.8 -1.8 GhoT/OrtT family toxin compare
IAI47_09945 -0.8 -2.6 hydroxyisourate hydrolase compare
IAI47_21015 -0.8 -1.7 helix-turn-helix transcriptional regulator compare
IAI47_09380 -0.8 -2.7 peptide ABC transporter substrate-binding protein SapA compare
IAI47_02515 -0.8 -2.5 transcriptional regulator ArgR compare
IAI47_18540 -0.7 -3.3 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_08605 -0.7 -1.4 hypothetical protein compare
IAI47_16095 -0.7 -2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_10795 -0.7 -2.9 HTH-type transcriptional repressor PurR compare
IAI47_16925 -0.7 -5.0 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_06195 -0.7 -3.4 flagella biosynthesis regulator Flk compare
IAI47_15305 -0.7 -2.1 allantoin racemase compare
IAI47_11515 -0.7 -0.9 hypothetical protein compare
IAI47_01715 -0.7 -3.0 malonate decarboxylase holo-ACP synthase compare
IAI47_08680 -0.7 -2.9 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_17580 -0.7 -4.1 hypothetical protein compare
IAI47_12655 -0.7 -4.2 Lon protease family protein compare
IAI47_19500 -0.7 -2.5 Insecticidal toxin complex protein tccz compare
IAI47_01830 -0.7 -4.6 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_08450 -0.7 -1.5 Holliday junction branch migration DNA helicase RuvB compare
IAI47_10695 -0.7 -3.0 N-acetyltransferase family protein compare
IAI47_03135 -0.7 -2.8 outer membrane channel protein TolC compare
IAI47_04740 -0.7 -1.6 hypothetical protein compare
IAI47_14805 -0.7 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_11870 -0.7 -1.6 DUF2767 family protein compare
IAI47_19825 -0.7 -2.4 EAL domain-containing protein compare
IAI47_02040 -0.7 -3.5 peptidylprolyl isomerase compare
IAI47_10555 -0.7 -1.8 hypothetical protein compare
IAI47_10220 -0.7 -2.9 pyrroloquinoline quinone biosynthesis protein PqqB compare
IAI47_03235 -0.7 -1.9 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_10430 -0.7 -1.2 hypothetical protein compare
IAI47_21490 -0.7 -2.9 H-NS histone family protein compare
IAI47_10670 -0.6 -2.4 SDR family oxidoreductase compare
IAI47_07455 -0.6 -1.9 hypothetical protein compare
IAI47_03440 -0.6 -1.8 general stress protein compare


Specific Phenotypes

For 3 genes in this experiment

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms