Experiment set5IT065 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +2.8 17.9 transcriptional regulator LrhA compare
IAI47_10470 +2.0 4.0 electron transport complex subunit E compare
IAI47_05525 +1.9 2.3 tRNA-Ala compare
IAI47_10845 +1.9 4.9 major outer membrane lipoprotein compare
IAI47_19035 +1.9 1.6 transcriptional regulator compare
IAI47_12790 +1.6 1.3 chromosome partition protein MukE compare
IAI47_05735 +1.5 3.2 hypothetical protein compare
IAI47_00460 +1.5 2.1 glutamate--ammonia ligase compare
IAI47_09245 +1.4 4.4 YmiA family putative membrane protein compare
IAI47_08705 +1.4 10.2 carboxy terminal-processing peptidase compare
IAI47_11655 +1.3 1.3 hypothetical protein compare
IAI47_21155 +1.3 3.0 IS6 family transposase compare
IAI47_08035 +1.3 1.7 flagellar hook-basal body complex protein FliE compare
IAI47_19710 +1.2 3.6 helix-turn-helix transcriptional regulator compare
IAI47_05065 +1.2 3.1 YfgM family protein compare
IAI47_10825 +1.1 1.1 tRNA-Val compare
IAI47_08740 +1.1 4.2 DUF2627 domain-containing protein compare
IAI47_12280 +1.0 7.7 glucan biosynthesis protein G compare
IAI47_21595 +1.0 6.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_15235 +1.0 2.2 hydroxyisourate hydrolase compare
IAI47_17000 +1.0 7.5 lipoprotein NlpI compare
IAI47_03915 +1.0 3.0 RNA pyrophosphohydrolase compare
IAI47_11735 +1.0 1.9 histidinol-phosphatase compare
IAI47_05670 +1.0 2.0 AlpA family transcriptional regulator compare
IAI47_09550 +1.0 3.4 hypothetical protein compare
IAI47_06395 +0.9 1.3 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_20600 +0.9 2.7 hypothetical protein compare
IAI47_06380 +0.9 2.0 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_14700 +0.9 5.1 protoheme IX farnesyltransferase compare
IAI47_08655 +0.9 3.8 transcriptional regulator BetI compare
IAI47_08745 +0.9 1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_06940 +0.9 0.8 tyrosine-protein kinase Wzc compare
IAI47_13480 +0.9 2.8 molybdopterin synthase sulfur carrier subunit compare
IAI47_08815 +0.9 2.6 hypothetical protein compare
IAI47_17050 +0.9 4.5 preprotein translocase subunit SecG compare
IAI47_13770 +0.9 5.9 citrate synthase compare
IAI47_09795 +0.9 2.4 DUF1283 family protein compare
IAI47_20960 +0.9 3.2 LysR family transcriptional regulator compare
IAI47_05520 +0.8 0.6 tRNA-Ala compare
IAI47_10330 +0.8 2.9 DNA replication terminus site-binding protein compare
IAI47_12615 +0.8 3.2 methylglyoxal synthase compare
IAI47_04280 +0.8 2.3 alkylphosphonate utilization protein compare
IAI47_07990 +0.8 3.4 flagellar motor switch protein FliN compare
IAI47_10565 +0.8 1.5 DUF4113 domain-containing protein compare
IAI47_19690 +0.8 0.5 hypothetical protein compare
IAI47_03645 +0.8 6.5 O-antigen ligase family protein compare
IAI47_06410 +0.8 3.0 NADH-quinone oxidoreductase subunit L compare
IAI47_08105 +0.8 1.3 DinI family protein compare
IAI47_13155 +0.8 1.4 H-NS histone family protein compare
IAI47_00675 +0.8 6.6 glycosyltransferase family 9 protein compare
IAI47_09755 +0.8 3.3 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_05420 +0.8 0.8 PTS glucose transporter subunit IIA compare
IAI47_09505 +0.8 2.5 YnbE family lipoprotein compare
IAI47_12545 +0.8 1.1 general stress protein compare
IAI47_19850 +0.8 2.0 hypothetical protein compare
IAI47_11550 +0.7 1.3 hypothetical protein compare
IAI47_00855 +0.7 2.5 cell division protein FtsN compare
IAI47_08700 +0.7 3.4 RNA chaperone ProQ compare
IAI47_00670 +0.7 6.2 sugar glycosyltransferase compare
IAI47_14730 +0.7 0.6 exodeoxyribonuclease VII small subunit compare
IAI47_05880 +0.7 2.6 lysis protein compare
IAI47_18470 +0.7 5.7 ECA oligosaccharide polymerase compare
IAI47_21115 +0.7 1.7 arsenate reductase (glutaredoxin) compare
IAI47_12570 +0.7 0.8 tRNA-Ser compare
IAI47_18715 +0.7 1.8 YibL family ribosome-associated protein compare
IAI47_18250 +0.7 3.4 transcription/translation regulatory transformer protein RfaH compare
IAI47_03640 +0.7 5.5 glycosyltransferase compare
IAI47_20625 +0.7 1.5 DUF2946 domain-containing protein compare
IAI47_05490 +0.7 2.4 tRNA-Val compare
IAI47_11210 +0.7 4.6 type VI secretion system-associated protein TagF compare
IAI47_04750 +0.7 1.3 hypothetical protein compare
IAI47_05405 +0.7 2.6 cysteine synthase CysM compare
IAI47_12275 +0.7 5.6 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_06550 +0.7 1.0 hypothetical protein compare
IAI47_16725 +0.7 3.2 DUF445 domain-containing protein compare
IAI47_19040 +0.7 2.8 hypothetical protein compare
IAI47_18595 +0.6 5.1 endoglucanase compare
IAI47_12955 +0.6 2.0 cold shock-like protein CspD compare
IAI47_13925 +0.6 1.4 tRNA-Met compare
IAI47_08015 +0.6 3.6 flagellum-specific ATP synthase FliI compare
IAI47_07625 +0.6 1.8 GNAT family N-acetyltransferase compare
IAI47_21035 +0.6 1.6 TetR/AcrR family transcriptional regulator compare
IAI47_06790 +0.6 3.1 alkyl hydroperoxide reductase subunit C compare
IAI47_00365 +0.6 2.6 ribose ABC transporter substrate-binding protein RbsB compare
IAI47_07470 +0.6 2.0 AlpA family transcriptional regulator compare
IAI47_06675 +0.6 2.3 DUF1232 domain-containing protein compare
IAI47_05580 +0.6 1.0 membrane protein YpdK compare
IAI47_07505 +0.6 1.8 DNA-directed RNA polymerase subunit beta compare
IAI47_13985 +0.6 2.8 amino acid ABC transporter ATP-binding protein compare
IAI47_13640 +0.6 1.7 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_05940 +0.6 3.9 DUF4054 domain-containing protein compare
IAI47_13750 +0.6 2.0 succinate dehydrogenase iron-sulfur subunit compare
IAI47_13745 +0.6 2.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_14965 +0.6 1.0 hypothetical protein compare
IAI47_10370 +0.6 2.7 oxidoreductase compare
IAI47_15995 +0.6 0.9 leu operon leader peptide compare
IAI47_06135 +0.6 1.5 phosphohistidine phosphatase SixA compare
IAI47_05875 +0.6 3.5 lysozyme compare
IAI47_17895 +0.6 2.7 diacylglycerol kinase compare
IAI47_07000 +0.6 3.8 UDP-glucose 4-epimerase GalE compare
IAI47_21635 +0.6 3.0 hypothetical protein compare
IAI47_05665 +0.6 1.6 hypothetical protein compare
IAI47_12520 +0.6 2.3 pyrimidine utilization protein C compare
IAI47_06405 +0.6 1.6 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_01180 +0.6 0.7 prolyl oligopeptidase family serine peptidase compare
IAI47_00335 +0.6 3.3 two-component system sensor histidine kinase QseC compare
IAI47_16295 +0.6 2.3 urea ABC transporter ATP-binding protein UrtD compare
IAI47_12130 +0.6 3.9 flagellar basal body P-ring protein FlgI compare
IAI47_05775 +0.6 2.6 type II toxin-antitoxin system MqsA family antitoxin compare
IAI47_08280 +0.6 3.2 flagellar transcriptional regulator FlhD compare
IAI47_05860 +0.6 2.1 YlcG family protein compare
IAI47_01100 +0.6 4.1 malate dehydrogenase (quinone) compare
IAI47_08340 +0.6 2.0 protein phosphatase CheZ compare
IAI47_20630 +0.6 2.6 DUF2534 family protein compare
IAI47_17510 +0.5 1.9 DUF1330 domain-containing protein compare
IAI47_13645 +0.5 2.2 helix-turn-helix domain-containing protein compare
IAI47_21600 +0.5 1.3 EamA family transporter compare
IAI47_04060 +0.5 1.9 YqcC family protein compare
IAI47_16490 +0.5 1.4 PTS sugar transporter subunit IIA compare
IAI47_19890 +0.5 1.0 hypothetical protein compare
IAI47_12565 +0.5 4.2 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_10265 +0.5 1.4 helix-turn-helix domain-containing protein compare
IAI47_06370 +0.5 2.4 NADH-quinone oxidoreductase subunit C/D compare
IAI47_06980 +0.5 0.9 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_05970 +0.5 2.3 hypothetical protein compare
IAI47_13135 +0.5 2.5 isoaspartyl peptidase/L-asparaginase compare
IAI47_20715 +0.5 2.3 helix-turn-helix transcriptional regulator compare
IAI47_07390 +0.5 2.4 creatininase family protein compare
IAI47_11800 +0.5 2.7 ABC transporter permease compare
IAI47_13305 +0.5 2.2 helix-turn-helix transcriptional regulator compare
IAI47_08080 +0.5 1.6 hypothetical protein compare
IAI47_14980 +0.5 1.2 hypothetical protein compare
IAI47_07590 +0.5 3.2 haloacid dehalogenase type II compare
IAI47_02775 +0.5 1.5 glycine dehydrogenase compare
IAI47_04295 +0.5 1.6 nicotinamide-nucleotide amidase compare
IAI47_00730 +0.5 1.3 glutaredoxin 3 compare
IAI47_18405 +0.5 1.6 DUF484 domain-containing protein compare
IAI47_05910 +0.5 3.0 DUF1073 domain-containing protein compare
IAI47_05870 +0.5 1.6 lysis protein compare
IAI47_06780 +0.5 2.7 iron-sulfur cluster carrier protein ApbC compare
IAI47_05820 +0.5 2.2 DUF3850 domain-containing protein compare
IAI47_08270 +0.5 1.8 trehalose-phosphatase compare
IAI47_16390 +0.5 0.4 tRNA-Leu compare
IAI47_11195 +0.5 1.9 SH3 domain-containing protein compare
IAI47_20330 +0.5 2.2 LacI family DNA-binding transcriptional regulator compare
IAI47_14690 +0.5 2.1 cytochrome o ubiquinol oxidase subunit III compare
IAI47_02345 +0.5 0.5 5S ribosomal RNA compare
IAI47_02845 +0.5 3.7 penicillin-binding protein activator compare
IAI47_21280 +0.5 1.9 amino acid ABC transporter substrate-binding protein compare
IAI47_06480 +0.5 3.2 phosphotransferase RcsD compare
IAI47_21290 +0.5 1.4 alpha/beta hydrolase compare
IAI47_05710 +0.5 1.3 hypothetical protein compare
IAI47_10135 +0.5 2.4 substrate-binding domain-containing protein compare
IAI47_06915 +0.5 3.2 outer membrane assembly protein AsmA compare
IAI47_05740 +0.5 1.9 DUF5444 family protein compare
IAI47_15350 +0.5 3.3 endonuclease/exonuclease/phosphatase family protein compare
IAI47_08940 +0.5 2.1 D-hexose-6-phosphate mutarotase compare
IAI47_06360 +0.5 0.9 NADH-quinone oxidoreductase subunit A compare
IAI47_08010 +0.5 2.3 flagella biosynthesis chaperone FliJ compare
IAI47_16410 +0.5 1.7 YbaK/EbsC family protein compare
IAI47_11595 +0.5 1.8 type VI secretion system baseplate subunit TssE compare
IAI47_00830 +0.5 3.2 aquaporin family protein compare
IAI47_10145 +0.5 1.4 winged helix-turn-helix transcriptional regulator compare
IAI47_10995 +0.5 2.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
IAI47_16420 +0.5 3.7 LacI family DNA-binding transcriptional regulator compare
IAI47_08345 +0.5 3.4 flagellar type III secretion system protein FlhB compare
IAI47_05630 +0.5 1.0 hypothetical protein compare
IAI47_05840 +0.5 2.0 recombination protein NinB compare
IAI47_15310 +0.5 1.9 GntR family transcriptional regulator compare
IAI47_02830 +0.5 1.5 divisome-associated lipoprotein YraP compare
IAI47_18985 +0.5 1.3 MarR family transcriptional regulator compare
IAI47_08695 +0.5 1.8 GAF domain-containing protein compare
IAI47_08295 +0.5 3.2 flagellar motor protein MotB compare
IAI47_19125 +0.5 2.0 hypothetical protein compare
IAI47_07230 +0.5 2.5 alpha-E domain-containing protein compare
IAI47_06785 +0.5 2.2 GNAT family N-acetyltransferase compare
IAI47_20645 +0.5 2.0 YtfJ family protein compare
IAI47_18520 +0.5 3.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_07970 +0.5 2.5 flagellar type III secretion system protein FliR compare
IAI47_21180 +0.5 1.2 IS6 family transposase compare
IAI47_19405 +0.5 2.3 XdhC family protein compare
IAI47_12990 +0.4 2.0 lipoprotein compare
IAI47_19875 +0.4 2.3 TetR/AcrR family transcriptional regulator compare
IAI47_16445 +0.4 1.7 LysR family transcriptional regulator compare
IAI47_06390 +0.4 1.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_04895 +0.4 1.4 pyridoxine 5'-phosphate synthase compare
IAI47_10530 +0.4 2.0 hypothetical protein compare
IAI47_16045 +0.4 2.7 DedA family protein compare
IAI47_05890 +0.4 2.3 trypsin-like peptidase domain-containing protein compare
IAI47_07985 +0.4 2.0 flagellar biosynthetic protein FliO compare
IAI47_15635 +0.4 0.6 RNA polymerase-binding protein DksA compare
IAI47_16595 +0.4 1.5 DUF4102 domain-containing protein compare
IAI47_15840 +0.4 2.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
IAI47_10230 +0.4 1.7 dipeptidase compare
IAI47_19740 +0.4 1.7 anti-sigma factor compare
IAI47_20245 +0.4 1.4 DUF1109 domain-containing protein compare
IAI47_12010 +0.4 1.8 YcfL family protein compare
IAI47_06335 +0.4 1.7 YfbU family protein compare
IAI47_10000 +0.4 2.3 ABC transporter permease compare
IAI47_15880 +0.4 1.3 DNA gyrase inhibitor YacG compare


Specific Phenotypes

For 3 genes in this experiment

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms