Experiment set5IT065 for Sphingomonas koreensis DSMZ 15582

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L-Glutamine nitrogen source

Group: nitrogen source
Media: RCH2_defined_Glucose_noNitrogen + L-Glutamine (5 mM)
Culturing: korea_ML2, tube, Aerobic, at 30 (C), shaken=200 rpm
Growth: about 6.7 generations
By: Mark on 1/26/2015
Media components: 0.1 g/L Potassium Chloride, 0.6 g/L Sodium phosphate monobasic monohydrate, 20 mM D-Glucose, 30 mM PIPES sesquisodium salt, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)

Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Glutamine in Sphingomonas koreensis DSMZ 15582

For nitrogen source L-Glutamine across organisms

SEED Subsystems

Subsystem #Specific
ABC transporter oligopeptide (TC 3.A.1.5.1) 1
Glycerol and Glycerol-3-phosphate Uptake and Utilization 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Glycine and Serine Utilization 1
Pyruvate Alanine Serine Interconversions 1
Sex pheromones in Enterococcus faecalis and other Firmicutes 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-serine degradation 3 3 3
L-cysteine degradation II 3 2 2
D-serine degradation 3 2 2
L-tryptophan degradation II (via pyruvate) 3 2 2
glycerol-3-phosphate shuttle 2 2 1
glycine betaine degradation III 7 4 3
felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis 5 2 2
glycine betaine degradation I 8 4 3
glycine degradation 3 3 1
L-methionine biosynthesis II 6 5 2
CDP-diacylglycerol biosynthesis I 4 4 1
CDP-diacylglycerol biosynthesis II 4 4 1
L-mimosine degradation 8 4 2
glutathione-mediated detoxification I 8 3 2
CDP-diacylglycerol biosynthesis III 5 4 1
phosphatidate biosynthesis (yeast) 5 3 1
glucosylglycerol biosynthesis 5 2 1
phosphatidylglycerol biosynthesis II 6 5 1
phosphatidylglycerol biosynthesis I 6 5 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 2
purine nucleobases degradation II (anaerobic) 24 11 3
1,3-propanediol biosynthesis (engineered) 9 4 1
superpathway of phospholipid biosynthesis III (E. coli) 12 9 1
superpathway of cardiolipin biosynthesis (bacteria) 13 9 1
superpathway of phospholipid biosynthesis II (plants) 28 9 1