Experiment set5IT064 for Rhodanobacter denitrificans FW104-10B01

Compare to:

a-Cyclodextrin 20 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS02790 -3.9 -15.1 MlaD family protein compare
LRK54_RS02785 -3.8 -14.7 PqiC family protein compare
LRK54_RS12710 -3.7 -7.1 DNA starvation/stationary phase protection protein compare
LRK54_RS02800 -3.7 -14.1 paraquat-inducible protein A compare
LRK54_RS02795 -3.6 -10.3 paraquat-inducible protein A compare
LRK54_RS12625 -3.4 -11.9 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS02560 -3.3 -9.6 MalM family protein compare
LRK54_RS03185 -3.2 -4.9 phosphoglycerate dehydrogenase compare
LRK54_RS03895 -3.2 -13.8 lipopolysaccharide biosynthesis protein compare
LRK54_RS04260 -3.1 -6.3 pyrroline-5-carboxylate reductase compare
LRK54_RS11375 -3.1 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS10965 -3.1 -14.7 FAD-dependent oxidoreductase compare
LRK54_RS11560 -3.0 -3.0 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS08730 -3.0 -14.3 DUF481 domain-containing protein compare
LRK54_RS04585 -3.0 -4.1 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS10320 -2.9 -5.5 dihydroxy-acid dehydratase compare
LRK54_RS10335 -2.9 -11.1 3-isopropylmalate dehydratase large subunit compare
LRK54_RS13760 -2.9 -4.8 trypsin-like peptidase domain-containing protein compare
LRK54_RS17505 -2.8 -3.3 preprotein translocase subunit SecG compare
LRK54_RS10175 -2.8 -20.7 autotransporter domain-containing protein compare
LRK54_RS06840 -2.8 -20.4 DNA polymerase I compare
LRK54_RS10350 -2.8 -8.8 hypothetical protein compare
LRK54_RS00795 -2.8 -15.3 long-chain-fatty-acid--CoA ligase compare
LRK54_RS09200 -2.7 -10.8 MFS transporter compare
LRK54_RS12950 -2.7 -9.0 DUF2066 domain-containing protein compare
LRK54_RS00440 -2.7 -4.9 high frequency lysogenization protein HflD compare
LRK54_RS10960 -2.7 -19.4 glutamate synthase large subunit compare
LRK54_RS04625 -2.7 -10.9 serine hydroxymethyltransferase compare
LRK54_RS09125 -2.7 -4.5 hypothetical protein compare
LRK54_RS12185 -2.7 -12.6 penicillin-binding protein activator compare
LRK54_RS10345 -2.7 -6.6 2-isopropylmalate synthase compare
LRK54_RS16945 -2.6 -2.6 sigma-E factor negative regulatory protein compare
LRK54_RS07145 -2.6 -19.4 OmpP1/FadL family transporter compare
LRK54_RS01340 -2.6 -11.8 amidophosphoribosyltransferase compare
LRK54_RS05725 -2.6 -6.3 DUF4398 domain-containing protein compare
LRK54_RS11565 -2.6 -3.1 anthranilate phosphoribosyltransferase compare
LRK54_RS00400 -2.6 -10.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS10165 -2.6 -13.3 phosphoribosylamine--glycine ligase compare
LRK54_RS18050 -2.6 -6.9 lipopolysaccharide assembly protein LapB compare
LRK54_RS16940 -2.6 -2.5 RNA polymerase sigma factor RpoE compare
LRK54_RS11765 -2.6 -7.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS10325 -2.6 -7.7 3-isopropylmalate dehydrogenase compare
LRK54_RS12200 -2.5 -6.7 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS14590 -2.5 -5.4 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS04025 -2.5 -1.0 diacylglycerol kinase compare
LRK54_RS10315 -2.5 -9.5 ketol-acid reductoisomerase compare
LRK54_RS02375 -2.5 -8.2 glutamate 5-kinase compare
LRK54_RS02395 -2.5 -3.7 acetylornithine deacetylase compare
LRK54_RS02390 -2.4 -6.6 acetylglutamate kinase compare
LRK54_RS16660 -2.4 -8.1 VTT domain-containing protein compare
LRK54_RS14775 -2.4 -9.2 cold-shock protein compare
LRK54_RS16155 -2.4 -1.5 folate-binding protein compare
LRK54_RS09280 -2.4 -22.4 TonB-dependent receptor compare
LRK54_RS11760 -2.4 -10.7 ATP-binding cassette domain-containing protein compare
LRK54_RS16735 -2.4 -9.1 endopeptidase La compare
LRK54_RS05310 -2.4 -8.0 homoserine O-succinyltransferase compare
LRK54_RS11415 -2.4 -11.1 anthranilate synthase component I compare
LRK54_RS03925 -2.4 -11.9 glycosyltransferase family 4 protein compare
LRK54_RS03110 -2.3 -8.5 nucleotidyltransferase family protein compare
LRK54_RS00305 -2.3 -7.5 asparagine synthase B compare
LRK54_RS14480 -2.3 -6.4 response regulator transcription factor compare
LRK54_RS05630 -2.3 -6.7 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS05415 -2.3 -6.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS02460 -2.3 -8.5 phosphoglycolate phosphatase compare
LRK54_RS12030 -2.3 -9.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK54_RS12975 -2.2 -1.6 hemolysin family protein compare
LRK54_RS02380 -2.2 -5.4 argininosuccinate lyase compare
LRK54_RS02400 -2.2 -6.4 argininosuccinate synthase compare
LRK54_RS03105 -2.2 -11.9 phosphotransferase compare
LRK54_RS05615 -2.2 -12.8 hypothetical protein compare
LRK54_RS03405 -2.2 -5.8 ribonuclease G compare
LRK54_RS04140 -2.2 -5.3 inositol-phosphate phosphatase compare
LRK54_RS11785 -2.2 -12.2 VacJ family lipoprotein compare
LRK54_RS10310 -2.2 -7.9 biosynthetic-type acetolactate synthase large subunit compare
LRK54_RS02415 -2.2 -9.3 N-acetylornithine carbamoyltransferase compare
LRK54_RS11670 -2.1 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
LRK54_RS04710 -2.1 -2.5 glycosyltransferase family 2 protein compare
LRK54_RS11570 -2.1 -4.0 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS11770 -2.1 -13.8 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS05650 -2.1 -4.2 ABC transporter ATP-binding protein compare
LRK54_RS05740 -2.1 -4.6 phosphoglycerate kinase compare
LRK54_RS10305 -2.0 -3.0 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS17025 -2.0 -1.1 cold-shock protein compare
LRK54_RS12865 -2.0 -7.8 HPr(Ser) kinase/phosphatase compare
LRK54_RS08625 -2.0 -13.8 exodeoxyribonuclease III compare
LRK54_RS04720 -2.0 -5.8 phosphoribosylformylglycinamidine synthase compare
LRK54_RS11170 -2.0 -2.3 NADP-dependent malic enzyme compare
LRK54_RS02370 -2.0 -9.2 glutamate-5-semialdehyde dehydrogenase compare
LRK54_RS05540 -2.0 -1.9 glycosyltransferase family 2 protein compare
LRK54_RS06470 -2.0 -7.0 carboxy terminal-processing peptidase compare
LRK54_RS12945 -1.9 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS03125 -1.9 -1.3 preprotein translocase subunit YajC compare
LRK54_RS00670 -1.9 -2.3 OmpA family protein compare
LRK54_RS03710 -1.9 -7.5 tetratricopeptide repeat protein compare
LRK54_RS02385 -1.9 -6.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
LRK54_RS03920 -1.9 -1.6 hypothetical protein compare
LRK54_RS06425 -1.9 -1.3 ribonucleoside-diphosphate reductase compare
LRK54_RS12735 -1.9 -3.0 NAD-dependent epimerase/dehydratase family protein compare
LRK54_RS09210 -1.9 -5.1 anhydro-N-acetylmuramic acid kinase compare
LRK54_RS13710 -1.9 -2.9 CBS domain-containing protein compare
LRK54_RS05640 -1.9 -7.2 GDP-mannose 4,6-dehydratase compare
LRK54_RS15365 -1.9 -2.1 hypothetical protein compare
LRK54_RS02180 -1.9 -4.3 UvrD-helicase domain-containing protein compare
LRK54_RS12075 -1.9 -13.6 phosphoenolpyruvate carboxylase compare
LRK54_RS01680 -1.9 -5.2 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS11830 -1.9 -14.3 penicillin-binding protein 1A compare
LRK54_RS17900 -1.8 -2.4 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS01685 -1.8 -8.5 tryptophan synthase subunit beta compare
LRK54_RS05200 -1.8 -2.9 hypothetical protein compare
LRK54_RS05610 -1.8 -7.9 GtrA family protein compare
LRK54_RS05765 -1.8 -7.8 fructose-bisphosphate aldolase class I compare
LRK54_RS12295 -1.8 -3.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS16970 -1.8 -3.6 ribonuclease III compare
LRK54_RS16615 -1.8 -1.7 phosphopyruvate hydratase compare
LRK54_RS05305 -1.8 -9.6 cystathionine gamma-synthase compare
LRK54_RS03880 -1.8 -11.0 pilin compare
LRK54_RS05635 -1.8 -8.5 dehydrogenase compare
LRK54_RS10330 -1.8 -2.2 3-isopropylmalate dehydratase small subunit compare
LRK54_RS11800 -1.7 -10.8 RidA family protein compare
LRK54_RS03290 -1.7 -1.2 RIP metalloprotease RseP compare
LRK54_RS01590 -1.7 -7.8 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS16955 -1.7 -8.6 translation elongation factor 4 compare
LRK54_RS02855 -1.7 -2.8 type I restriction-modification system subunit M compare
LRK54_RS08320 -1.7 -11.9 phenylalanine 4-monooxygenase compare
LRK54_RS05655 -1.7 -2.8 ABC transporter permease compare
LRK54_RS16730 -1.7 -1.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS00910 -1.7 -7.5 siroheme synthase CysG compare
LRK54_RS05575 -1.7 -8.7 class I SAM-dependent methyltransferase compare
LRK54_RS06745 -1.7 -3.0 mitochondrial fission ELM1 family protein compare
LRK54_RS06720 -1.6 -9.3 glycosyltransferase compare
LRK54_RS09805 -1.6 -4.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS03200 -1.6 -6.7 integration host factor subunit alpha compare
LRK54_RS05785 -1.6 -6.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05500 -1.6 -1.3 hypothetical protein compare
LRK54_RS02175 -1.6 -6.1 exodeoxyribonuclease V subunit gamma compare
LRK54_RS10340 -1.6 -5.8 branched-chain amino acid transaminase compare
LRK54_RS16150 -1.6 -1.6 cell wall hydrolase compare
LRK54_RS12860 -1.6 -4.0 RNase adapter RapZ compare
LRK54_RS05600 -1.6 -8.2 hypothetical protein compare
LRK54_RS00085 -1.5 -1.1 tetratricopeptide repeat protein compare
LRK54_RS00620 -1.5 -7.9 FtsH protease activity modulator HflK compare
LRK54_RS09110 -1.5 -11.7 phospholipase D family protein compare
LRK54_RS01585 -1.5 -5.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS01520 -1.5 -10.1 amino acid permease compare
LRK54_RS12855 -1.5 -3.4 PTS fructose transporter subunit IIA compare
LRK54_RS04765 -1.5 -6.8 LysR substrate-binding domain-containing protein compare
LRK54_RS04865 -1.5 -8.2 tol-pal system protein YbgF compare
LRK54_RS15170 -1.5 -7.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK54_RS03180 -1.5 -8.4 FAD-binding oxidoreductase compare
LRK54_RS05535 -1.5 -4.5 glycosyltransferase family 2 protein compare
LRK54_RS16755 -1.5 -3.8 SurA N-terminal domain-containing protein compare
LRK54_RS05980 -1.5 -1.4 ATP-binding protein compare
LRK54_RS06795 -1.5 -4.2 type II 3-dehydroquinate dehydratase compare
LRK54_RS17160 -1.5 -2.1 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS05665 -1.5 -3.5 dTDP-glucose 4,6-dehydratase compare
LRK54_RS00905 -1.5 -4.7 cysteine synthase A compare
LRK54_RS18060 -1.5 -3.1 polysaccharide biosynthesis protein compare
LRK54_RS14825 -1.5 -3.7 protease HtpX compare
LRK54_RS05985 -1.4 -1.0 response regulator transcription factor compare
LRK54_RS01605 -1.4 -8.7 histidinol dehydrogenase compare
LRK54_RS01600 -1.4 -7.7 histidinol-phosphate transaminase compare
LRK54_RS06865 -1.4 -7.6 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS04130 -1.4 -7.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LRK54_RS16655 -1.4 -2.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS02495 -1.4 -4.3 50S ribosomal protein L19 compare
LRK54_RS03915 -1.4 -8.0 glycosyltransferase family 2 protein compare
LRK54_RS11775 -1.4 -9.2 ABC transporter substrate-binding protein compare
LRK54_RS02185 -1.4 -3.2 exodeoxyribonuclease V subunit alpha compare
LRK54_RS06715 -1.4 -9.9 O-antigen ligase family protein compare
LRK54_RS05735 -1.4 -7.0 maleylacetoacetate isomerase compare
LRK54_RS13070 -1.4 -9.3 alpha-amylase family glycosyl hydrolase conserved
LRK54_RS02120 -1.4 -7.3 methionine synthase compare
LRK54_RS06500 -1.4 -8.5 lytic murein transglycosylase B compare
LRK54_RS10360 -1.3 -3.2 homoserine kinase compare
LRK54_RS12875 -1.3 -4.6 RNA polymerase factor sigma-54 compare
LRK54_RS01595 -1.3 -4.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK54_RS17270 -1.3 -2.4 DNA translocase FtsK compare
LRK54_RS12330 -1.3 -3.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK54_RS06530 -1.3 -11.1 carbohydrate kinase family protein compare
LRK54_RS02895 -1.3 -7.4 rhomboid family intramembrane serine protease compare
LRK54_RS07245 -1.3 -8.6 transglycosylase SLT domain-containing protein compare
LRK54_RS12595 -1.3 -3.6 (2Fe-2S)-binding protein compare
LRK54_RS16930 -1.3 -6.2 hypothetical protein compare
LRK54_RS04100 -1.3 -1.1 ATP-binding cassette domain-containing protein compare
LRK54_RS18055 -1.2 -2.6 glycosyltransferase family 4 protein compare
LRK54_RS14465 -1.2 -3.7 septum site-determining protein MinC compare
LRK54_RS10465 -1.2 -9.0 M61 family metallopeptidase compare
LRK54_RS03885 -1.2 -10.9 hypothetical protein compare
LRK54_RS17895 -1.2 -6.2 RluA family pseudouridine synthase compare
LRK54_RS03930 -1.2 -4.6 glycosyltransferase family 2 protein compare
LRK54_RS05645 -1.2 -8.7 glycosyltransferase compare
LRK54_RS01575 -1.2 -5.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LRK54_RS00615 -1.2 -5.0 protease modulator HflC compare
LRK54_RS14830 -1.2 -9.1 molecular chaperone HtpG compare
LRK54_RS05670 -1.2 -3.2 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS06895 -1.2 -1.2 hotdog fold thioesterase compare
LRK54_RS03890 -1.2 -10.1 hypothetical protein compare
LRK54_RS14245 -1.2 -1.7 hypothetical protein compare
LRK54_RS08680 -1.2 -6.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK54_RS13910 -1.2 -4.3 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare


Specific Phenotypes

For 36 genes in this experiment

For carbon source a-Cyclodextrin in Rhodanobacter denitrificans FW104-10B01

For carbon source a-Cyclodextrin across organisms