Experiment set5IT064 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with rubidium chloride 0.25 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4499 -3.6 -3.5 protein of unknown function DUF86 compare
Pf6N2E2_3942 -3.3 -10.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3941 -3.0 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5430 -2.9 -8.4 Transglycosylase, Slt family compare
Pf6N2E2_3062 -2.8 -4.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4369 -2.8 -1.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5111 -2.8 -3.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5160 -2.7 -2.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5178 -2.7 -2.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3349 -2.6 -3.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4678 -2.6 -1.8 hypothetical protein compare
Pf6N2E2_2755 -2.5 -2.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2217 -2.2 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5342 -2.1 -3.5 21 kDa hemolysin precursor compare
Pf6N2E2_5944 -2.1 -6.6 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_3690 -2.1 -6.5 Na(+)/H(+) antiporter compare
Pf6N2E2_4187 -2.1 -4.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2753 -2.1 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_5156 -2.1 -2.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2510 -2.0 -4.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5242 -2.0 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1705 -2.0 -1.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3271 -2.0 -2.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4611 -2.0 -3.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_623 -1.9 -1.9 FIG00954674: hypothetical protein compare
Pf6N2E2_2756 -1.9 -6.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_1352 -1.9 -2.8 Cation transport ATPase compare
Pf6N2E2_2503 -1.9 -2.0 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2574 -1.9 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_2320 -1.8 -2.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2825 -1.8 -3.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2674 -1.8 -1.7 FIG00953856: hypothetical protein compare
Pf6N2E2_5455 -1.8 -2.1 hypothetical protein compare
Pf6N2E2_5006 -1.8 -7.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2473 -1.8 -1.7 Major outer membrane lipoprotein I compare
Pf6N2E2_2218 -1.7 -3.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2527 -1.7 -3.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_620 -1.7 -6.4 BatD compare
Pf6N2E2_4362 -1.6 -2.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2261 -1.6 -5.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_2219 -1.6 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4352 -1.6 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5956 -1.6 -5.0 FIG004453: protein YceG like compare
Pf6N2E2_5555 -1.6 -1.5 Cold shock protein CspA compare
Pf6N2E2_624 -1.5 -4.7 hypothetical protein PA3071 compare
Pf6N2E2_621 -1.5 -5.5 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3096 -1.5 -1.6 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3702 -1.5 -2.9 FIG00953907: hypothetical protein compare
Pf6N2E2_3461 -1.5 -2.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1886 -1.5 -1.8 hypothetical protein compare
Pf6N2E2_5171 -1.5 -9.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2869 -1.4 -1.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4543 -1.4 -2.5 hypothetical protein compare
Pf6N2E2_122 -1.4 -2.8 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2274 -1.4 -4.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5339 -1.4 -4.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2318 -1.4 -5.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4159 -1.4 -3.2 Cytochrome c4 compare
Pf6N2E2_5338 -1.3 -5.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5014 -1.3 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3516 -1.3 -2.0 Probable transmembrane protein compare
Pf6N2E2_2509 -1.3 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2506 -1.3 -8.5 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3460 -1.3 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2752 -1.3 -5.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4206 -1.3 -1.6 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3791 -1.3 -6.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5435 -1.3 -3.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1701 -1.2 -2.0 ABC transporter ATP-binding protein compare
Pf6N2E2_304 -1.2 -3.0 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_6090 -1.2 -1.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2425 -1.2 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2127 -1.2 -3.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2507 -1.2 -4.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5527 -1.2 -1.9 Cold shock protein CspC compare
Pf6N2E2_3761 -1.2 -9.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3351 -1.2 -3.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_420 -1.2 -1.5 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5340 -1.2 -2.9 Stringent starvation protein A compare
Pf6N2E2_1534 -1.2 -2.0 Probable transmembrane protein compare
Pf6N2E2_3829 -1.2 -2.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_622 -1.2 -3.2 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5068 -1.2 -6.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2549 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_2071 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_5741 -1.2 -4.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_3770 -1.1 -2.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4928 -1.1 -1.3 Permeases of the major facilitator superfamily compare
Pf6N2E2_5733 -1.1 -2.8 NLP/P60 family protein compare
Pf6N2E2_572 -1.1 -2.9 hypothetical protein compare
Pf6N2E2_5150 -1.1 -3.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_737 -1.1 -1.6 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_5406 -1.1 -1.4 FIG00958224: hypothetical protein compare
Pf6N2E2_5534 -1.1 -3.7 FIG000859: hypothetical protein YebC compare
Pf6N2E2_2823 -1.1 -3.1 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3074 -1.1 -1.7 FIG00960973: hypothetical protein compare
Pf6N2E2_3282 -1.1 -2.0 FIG005080: Possible exported protein compare
Pf6N2E2_5672 -1.1 -2.5 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf6N2E2_5943 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_5508 -1.1 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4467 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_16 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_2211 -1.1 -5.1 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_3713 -1.1 -2.3 Acyl carrier protein compare
Pf6N2E2_2313 -1.1 -2.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4188 -1.1 -2.7 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3792 -1.1 -3.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2501 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_3258 -1.0 -2.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1110 -1.0 -2.8 FIG00964414: hypothetical protein compare
Pf6N2E2_3529 -1.0 -1.8 Toxin A compare
Pf6N2E2_3260 -1.0 -3.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2300 -1.0 -1.5 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_4146 -1.0 -1.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_5739 -1.0 -1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2340 -1.0 -2.1 Transcriptional regulator, GntR family compare
Pf6N2E2_3328 -1.0 -1.9 transcriptional regulator compare
Pf6N2E2_2310 -1.0 -5.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3303 -1.0 -2.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_1392 -1.0 -2.9 sensor histidine kinase compare
Pf6N2E2_2967 -1.0 -1.4 Cold shock protein CspA compare
Pf6N2E2_471 -1.0 -4.4 putative metalloprotease compare
Pf6N2E2_460 -1.0 -1.9 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_4162 -1.0 -2.1 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5766 -1.0 -1.4 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1870 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_2088 -1.0 -1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4585 -1.0 -6.0 Cell division protein FtsX compare
Pf6N2E2_4999 -1.0 -4.1 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_625 -1.0 -3.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3753 -1.0 -6.8 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2064 -1.0 -2.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4743 -1.0 -0.8 hypothetical protein compare
Pf6N2E2_4392 -1.0 -1.7 Translation initiation inhibitor compare
Pf6N2E2_4541 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_1445 -0.9 -2.0 Glutathione S-transferase compare
Pf6N2E2_4584 -0.9 -2.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5093 -0.9 -7.0 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_75 -0.9 -1.7 Colicin V production protein compare
Pf6N2E2_2514 -0.9 -2.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2311 -0.9 -3.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2488 -0.9 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5419 -0.9 -2.5 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_5130 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_350 -0.9 -1.8 Gfa-like protein compare
Pf6N2E2_5172 -0.9 -2.7 FOG: TPR repeat compare
Pf6N2E2_5312 -0.9 -1.8 FIG00964214: hypothetical protein compare
Pf6N2E2_3833 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_2835 -0.9 -1.4 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5245 -0.9 -4.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3834 -0.9 -3.8 Lipoprotein NlpD compare
Pf6N2E2_3908 -0.9 -3.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5906 -0.9 -1.5 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_40 -0.9 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5069 -0.9 -2.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2080 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_1656 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_660 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_2114 -0.9 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4579 -0.9 -1.4 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_6070 -0.9 -1.9 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_2126 -0.9 -3.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2824 -0.8 -4.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_1331 -0.8 -2.8 General substrate transporter:Major facilitator superfamily compare
Pf6N2E2_3665 -0.8 -0.7 serine/threonine protein kinase compare
Pf6N2E2_3617 -0.8 -1.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1699 -0.8 -1.3 FIG00955832: hypothetical protein compare
Pf6N2E2_5613 -0.8 -1.7 FIG00953674: hypothetical protein compare
Pf6N2E2_3679 -0.8 -2.3 Protein involved in catabolism of external DNA compare
Pf6N2E2_4071 -0.8 -2.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4305 -0.8 -1.1 FIG00959590: hypothetical protein compare
Pf6N2E2_5640 -0.8 -1.4 FIG00955597: hypothetical protein compare
Pf6N2E2_3293 -0.8 -1.8 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_3429 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_1720 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_3204 -0.8 -1.8 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_5740 -0.8 -1.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_882 -0.8 -2.7 FIG00961517: hypothetical protein compare
Pf6N2E2_5052 -0.8 -1.6 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2938 -0.8 -2.2 Outer membrane lipoprotein compare
Pf6N2E2_1081 -0.8 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_1385 -0.8 -1.9 FIG00956261: hypothetical protein compare
Pf6N2E2_3270 -0.8 -2.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_2508 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_367 -0.8 -1.9 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_6047 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_1236 -0.8 -1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_5001 -0.8 -1.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4624 -0.8 -0.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5840 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_927 -0.8 -2.4 (AJ250023) putative polyketide synthase compare
Pf6N2E2_1596 -0.8 -1.3 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5337 -0.8 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2317 -0.7 -2.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1431 -0.7 -2.1 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_613 -0.7 -1.0 lipoprotein, putative compare
Pf6N2E2_2933 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_4273 -0.7 -3.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_629 -0.7 -1.6 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_4388 -0.7 -4.9 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare


Specific Phenotypes

For 2 genes in this experiment

For stress rubidium chloride in Pseudomonas fluorescens FW300-N2E2

For stress rubidium chloride across organisms