Experiment set5IT064 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Cephalothin sodium salt 2 mg/ml

200 most important genes:

  gene name fitness t score description  
AO356_19425 -5.6 -3.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_04885 -5.1 -6.1 multidrug transporter compare
AO356_04875 -4.7 -9.6 antibiotic transporter compare
AO356_16600 -4.2 -2.9 malate:quinone oxidoreductase compare
AO356_04880 -4.1 -17.7 multidrug transporter compare
AO356_02250 -3.5 -9.3 pyridine nucleotide-disulfide oxidoreductase compare
AO356_19420 -3.5 -2.4 septum formation inhibitor compare
AO356_06685 -3.5 -2.4 preprotein translocase subunit YajC compare
AO356_18020 -3.3 -4.5 ATP-dependent DNA helicase RuvA compare
AO356_11315 -3.3 -2.2 shikimate dehydrogenase compare
AO356_04560 -3.0 -3.5 serine peptidase compare
AO356_10185 -2.9 -10.0 glutamate--cysteine ligase compare
AO356_03405 -2.9 -3.3 serine acetyltransferase compare
AO356_05415 -2.8 -5.9 hypothetical protein compare
AO356_01740 -2.8 -3.7 DNA-binding protein compare
AO356_13475 -2.7 -7.3 glutathione synthetase compare
AO356_03415 -2.7 -7.6 oxidoreductase compare
AO356_17515 -2.7 -12.5 murein transglycosylase compare
AO356_02800 -2.6 -3.5 transporter compare
AO356_09810 -2.6 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_14505 -2.5 -2.4 peptidase M23 compare
AO356_07910 -2.5 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_07915 -2.4 -3.2 exodeoxyribonuclease V subunit beta compare
AO356_21125 -2.4 -4.2 cyclic peptide transporter compare
AO356_15325 -2.3 -2.7 hypothetical protein compare
AO356_01750 -2.2 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO356_18025 -2.2 -3.3 ATP-dependent DNA helicase RuvB compare
AO356_02465 -2.2 -2.9 carbonate dehydratase compare
AO356_03420 -2.2 -6.6 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_03350 -2.1 -4.6 glycosyl transferase compare
AO356_06965 -2.0 -8.0 histidinol dehydrogenase compare
AO356_24655 -2.0 -3.5 hypothetical protein compare
AO356_03400 -2.0 -5.4 aminotransferase DegT compare
AO356_24645 -2.0 -6.3 hypothetical protein compare
AO356_05670 -1.9 -3.4 recombinase RecA compare
AO356_18960 -1.9 -6.0 hypothetical protein compare
AO356_24640 -1.9 -7.1 protein BatD compare
AO356_11025 -1.9 -6.0 transcriptional regulator PhoU compare
AO356_07000 -1.9 -3.3 ABC transporter permease compare
AO356_22125 -1.9 -7.1 isocitrate dehydrogenase compare
AO356_09815 -1.8 -5.7 imidazoleglycerol-phosphate dehydratase compare
AO356_13275 -1.8 -2.0 multidrug transporter compare
AO356_01745 -1.8 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_17985 -1.8 -6.0 cold-shock protein compare
AO356_12380 -1.7 -7.0 ATP-dependent DNA helicase RecG compare
AO356_09540 -1.7 -2.3 twin-arginine protein translocation system subunit TatC compare
AO356_06575 -1.7 -2.5 outer membrane protein assembly factor BamB compare
AO356_12515 -1.7 -4.9 exodeoxyribonuclease III compare
AO356_08930 -1.7 -2.5 heptose kinase compare
AO356_25750 -1.6 -2.3 GntR family transcriptional regulator compare
AO356_03360 -1.6 -2.8 hypothetical protein compare
AO356_18965 -1.6 -5.3 transcriptional regulator compare
AO356_08910 -1.6 -3.3 carbamoyltransferase compare
AO356_02265 -1.5 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_15165 -1.5 -2.4 protein cII compare
AO356_07480 -1.5 -3.1 carbamoyl phosphate synthase large subunit compare
AO356_05895 -1.4 -4.8 protein-L-isoaspartate O-methyltransferase compare
AO356_25420 -1.4 -2.4 chemotaxis protein CheY compare
AO356_08235 -1.4 -6.2 histidine kinase compare
AO356_06990 -1.4 -4.4 toluene tolerance protein compare
AO356_17070 -1.4 -2.4 cytochrome B compare
AO356_08585 -1.4 -3.2 50S ribosomal protein L9 compare
AO356_17785 -1.4 -1.3 heme utilization protein compare
AO356_03345 -1.4 -5.8 hypothetical protein compare
AO356_08645 -1.4 -4.0 hypothetical protein compare
AO356_28040 -1.4 -3.1 quinoprotein dehydrogenase-associated SoxYZ-like carrier compare
AO356_01755 -1.3 -2.7 trigger factor compare
AO356_09800 -1.3 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_07600 -1.3 -1.9 hypothetical protein compare
AO356_15330 -1.3 -4.3 D-alanyl-D-alanine carboxypeptidase compare
AO356_08875 -1.3 -2.4 toluene tolerance protein compare
AO356_08755 -1.3 -2.3 aspartyl protease compare
AO356_06995 -1.3 -4.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_08870 -1.3 -5.5 polymerase compare
AO356_18970 -1.3 -7.0 histidine kinase compare
AO356_08660 -1.3 -6.5 tRNA dimethylallyltransferase compare
AO356_24550 -1.3 -2.0 hypothetical protein compare
AO356_09795 -1.3 -1.4 imidazole glycerol phosphate synthase subunit HisF compare
AO356_20475 -1.2 -1.4 hypothetical protein compare
AO356_18150 -1.2 -3.3 hypothetical protein compare
AO356_03495 -1.2 -2.3 phosphoglycolate phosphatase compare
AO356_24665 -1.2 -5.3 AAA family ATPase compare
AO356_02460 -1.2 -2.2 hypothetical protein compare
AO356_18115 -1.2 -5.5 transporter compare
AO356_17890 -1.2 -2.0 H-NS histone compare
AO356_22095 -1.2 -4.0 cupin compare
AO356_03270 -1.2 -2.4 terminase compare
AO356_24845 -1.2 -2.0 ATPase compare
AO356_05760 -1.2 -2.6 phage tail protein compare
AO356_08890 -1.2 -4.1 glycosyltransferase compare
AO356_04055 -1.2 -1.9 hypothetical protein compare
AO356_08905 -1.1 -1.1 glycosyl transferase compare
AO356_17950 -1.1 -5.9 histidine kinase compare
AO356_27180 -1.1 -3.2 hypothetical protein compare
AO356_11610 -1.1 -1.6 glycerol acyltransferase compare
AO356_20845 -1.1 -4.4 alpha-L-glutamate ligase compare
AO356_06385 -1.1 -2.6 recombinase XerD compare
AO356_12725 -1.1 -3.3 recombinase XerC compare
AO356_19515 -1.1 -1.3 hypothetical protein compare
AO356_01095 -1.1 -2.7 glycolate oxidase compare
AO356_15200 -1.1 -4.6 hypothetical protein compare
AO356_00500 -1.1 -3.4 magnesium chelatase compare
AO356_03780 -1.1 -1.3 flagellar motor switch protein compare
AO356_23500 -1.1 -5.1 TetR family transcriptional regulator compare
AO356_09520 -1.1 -3.8 phosphoribosyl-AMP cyclohydrolase compare
AO356_03380 -1.1 -2.9 glycosyl amidation-associated protein WbuZ compare
AO356_00560 -1.1 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_24650 -1.0 -3.1 BatB protein compare
AO356_20175 -1.0 -1.1 3-oxoacyl-ACP synthase compare
AO356_02495 -1.0 -3.4 recombination protein RecR compare
AO356_02190 -1.0 -4.2 hypothetical protein compare
AO356_11045 -1.0 -6.5 phosphate-binding protein compare
AO356_28695 -1.0 -2.1 IclR family transcriptional regulator compare
AO356_20800 -1.0 -1.5 hypothetical protein compare
AO356_02270 -1.0 -7.1 transcription-repair coupling factor compare
AO356_05735 -1.0 -1.4 hypothetical protein compare
AO356_11990 -1.0 -6.7 DNA helicase II compare
AO356_01875 -1.0 -1.1 Cro/Cl family transcriptional regulator compare
AO356_08325 -1.0 -2.7 predicted copper homeostasis protein (from data) compare
AO356_11030 -1.0 -6.9 phosphate ABC transporter ATP-binding protein compare
AO356_08880 -1.0 -3.3 glycosyl transferase compare
AO356_08065 -1.0 -5.6 copper-transporting ATPase compare
AO356_24485 -1.0 -2.2 SAM-dependent methyltransferase compare
AO356_19090 -1.0 -1.7 phosphoribosylaminoimidazole synthetase compare
AO356_07385 -1.0 -1.2 tRNA-Thr compare
AO356_14335 -1.0 -2.8 rRNA methyltransferase compare
AO356_03365 -1.0 -2.3 UDP-N-acetylglucosamine 2-epimerase compare
AO356_01940 -1.0 -1.9 hypothetical protein compare
AO356_04570 -1.0 -4.9 RNA polymerase subunit sigma compare
AO356_02315 -1.0 -2.5 DNA topoisomerase I compare
AO356_26450 -0.9 -2.3 hypothetical protein compare
AO356_21795 -0.9 -1.4 PBS lyase compare
AO356_08925 -0.9 -3.8 lipopolysaccharide kinase compare
AO356_07540 -0.9 -1.5 SsrA-binding protein compare
AO356_12730 -0.9 -2.6 hypothetical protein compare
AO356_11680 -0.9 -1.6 chromosome partitioning protein ParB compare
AO356_11430 -0.9 -6.2 N-acetylmuramoyl-L-alanine amidase compare
AO356_28440 -0.9 -1.2 galactose 1-dehydrogenase compare
AO356_28610 -0.9 -1.3 AraC family transcriptional regulator compare
AO356_10580 -0.9 -5.5 hypothetical protein compare
AO356_15420 -0.9 -3.5 hypothetical protein compare
AO356_06980 -0.9 -2.5 BolA family transcriptional regulator compare
AO356_17520 -0.9 -1.3 phosphoribosylformylglycinamidine synthase compare
AO356_11450 -0.9 -1.6 cytochrome C compare
AO356_13685 -0.9 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_29810 -0.9 -3.3 cupin compare
AO356_17035 -0.9 -3.7 ATPase compare
AO356_14790 -0.9 -3.8 MFS transporter compare
AO356_26390 -0.9 -1.6 hypothetical protein compare
AO356_15140 -0.9 -1.6 homoserine dehydrogenase compare
AO356_21465 -0.9 -2.5 amidophosphoribosyltransferase compare
AO356_00870 -0.8 -2.1 tRNA-Pro compare
AO356_17610 -0.8 -1.9 preQ0 transporter compare
AO356_25505 -0.8 -1.2 hypothetical protein compare
AO356_13485 -0.8 -1.9 chemotaxis protein CheY compare
AO356_28430 -0.8 -2.3 hypothetical protein compare
AO356_29795 -0.8 -1.5 amino acid transporter compare
AO356_17090 -0.8 -2.7 phospholipid-binding protein compare
AO356_11055 -0.8 -2.9 long-chain acyl-CoA thioester hydrolase compare
AO356_15970 -0.8 -2.4 50s ribosomal protein l13 compare
AO356_27550 -0.8 -1.8 3-oxoacyl-ACP synthase compare
AO356_27405 -0.8 -1.8 MarR family transcriptional regulator compare
AO356_03500 -0.8 -2.6 3-oxoacyl-ACP reductase compare
AO356_14295 -0.8 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_11585 -0.8 -2.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_09640 -0.8 -3.1 histidine utilization repressor compare
AO356_27925 -0.8 -1.1 MarR family transcriptional regulator compare
AO356_21320 -0.8 -0.9 tRNA-Asn compare
AO356_11420 -0.8 -4.2 histidine kinase compare
AO356_10560 -0.8 -5.7 ABC transporter compare
AO356_11395 -0.8 -5.3 hypothetical protein compare
AO356_00880 -0.8 -1.6 integration host factor subunit alpha compare
AO356_03830 -0.8 -3.4 flagellar motor switch protein FliG compare
AO356_22935 -0.8 -1.7 hypothetical protein compare
AO356_13350 -0.8 -6.3 cell division protein FtsX compare
AO356_09455 -0.8 -1.0 ATP-dependent protease subunit HslV compare
AO356_19635 -0.8 -4.2 TetR family transcriptional regulator compare
AO356_06250 -0.8 -2.6 chemotaxis protein CheY compare
AO356_12520 -0.8 -1.2 orotate phosphoribosyltransferase compare
AO356_26630 -0.8 -1.6 XshC-Cox1 family protein compare
AO356_04965 -0.8 -1.4 ATP-dependent helicase compare
AO356_24245 -0.8 -1.7 siderophore-iron reductase FhuF compare
AO356_04325 -0.7 -2.8 allophanate hydrolase compare
AO356_10575 -0.7 -2.0 tryptophan synthase subunit beta compare
AO356_24160 -0.7 -3.0 formate dehydrogenase compare
AO356_15690 -0.7 -1.8 carbon starvation protein A compare
AO356_16450 -0.7 -2.0 GTP-binding protein compare
AO356_11465 -0.7 -4.4 DNA polymerase I compare
AO356_02440 -0.7 -3.7 cytochrome C oxidase Cbb3 compare
AO356_11675 -0.7 -4.4 chromosome partitioning protein compare
AO356_05995 -0.7 -1.7 hypothetical protein compare
AO356_02875 -0.7 -3.0 peroxiredoxin compare
AO356_26195 -0.7 -1.8 TetR family transcriptional regulator compare
AO356_02425 -0.7 -4.4 cytochrome C oxidase Cbb3 compare
AO356_02290 -0.7 -1.5 TetR family transcriptional regulator compare
AO356_27280 -0.7 -1.2 XRE family transcriptional regulator compare
AO356_12825 -0.7 -0.8 hypothetical protein compare
AO356_09185 -0.7 -1.1 hypothetical protein compare
AO356_14050 -0.7 -0.9 glutathione S-transferase compare
AO356_25300 -0.7 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in stress experiments

For stress Cephalothin sodium salt across organisms