Experiment set5IT064 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Aerobic_PHAGE INFX20MPI_ZN6A

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -6.0 -5.8 outer membrane protein TolC compare
CSW01_02890 -3.2 -12.7 aspartate kinase compare
CSW01_04650 -2.7 -3.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_01295 -2.7 -1.8 ABC transporter permease compare
CSW01_01300 -2.5 -5.4 sugar ABC transporter compare
CSW01_13305 -2.5 -2.9 shikimate kinase compare
CSW01_09240 -2.2 -4.9 Holliday junction branch migration DNA helicase RuvB compare
CSW01_13805 -2.1 -4.3 Hsp33 family molecular chaperone HslO compare
CSW01_05575 -1.7 -3.5 phosphate acetyltransferase compare
CSW01_03870 -1.7 -1.5 inositol monophosphatase compare
CSW01_18350 -1.6 -1.4 cell division protein DedD compare
CSW01_09245 -1.5 -4.6 Holliday junction branch migration protein RuvA compare
CSW01_14910 -1.5 -2.6 cold-shock protein compare
CSW01_13285 -1.5 -2.7 ribulose-phosphate 3-epimerase compare
CSW01_05265 -1.5 -1.8 methionine--tRNA ligase compare
CSW01_07500 -1.5 -1.8 DUF2835 domain-containing protein compare
CSW01_09620 -1.4 -3.9 trigger factor compare
CSW01_01245 -1.4 -4.4 lipopolysaccharide heptosyltransferase II compare
CSW01_11565 -1.2 -2.0 transcriptional regulator NrdR compare
CSW01_13300 -1.2 -5.9 3-dehydroquinate synthase compare
CSW01_08665 -1.2 -2.8 DNA transformation protein compare
CSW01_04850 -1.2 -5.2 septal ring lytic transglycosylase RlpA compare
CSW01_05165 -1.1 -1.1 electron transport complex subunit RsxC compare
CSW01_07190 -1.1 -4.3 transcriptional regulator FNR compare
CSW01_09365 -1.1 -4.9 pyruvate formate lyase 1-activating protein compare
CSW01_11730 -1.1 -2.4 2-dehydropantoate 2-reductase compare
CSW01_00560 -1.1 -3.3 DNA polymerase I compare
CSW01_15310 -1.1 -3.2 exoribonuclease R compare
CSW01_03795 -1.1 -1.3 phosphate ABC transporter ATP-binding protein compare
CSW01_09350 -1.1 -7.5 formate C-acetyltransferase compare
CSW01_12250 -1.1 -4.0 site-specific tyrosine recombinase XerD compare
CSW01_14680 -1.1 -1.7 aminotransferase compare
CSW01_01515 -1.1 -2.9 type II 3-dehydroquinate dehydratase compare
CSW01_10560 -1.1 -3.7 chorismate synthase compare
CSW01_13420 -1.0 -2.4 elongation factor P--(R)-beta-lysine ligase compare
CSW01_11700 -1.0 -2.8 hypothetical protein compare
CSW01_05580 -1.0 -3.7 acetate kinase compare
CSW01_03985 -1.0 -2.9 GMP synthase (glutamine-hydrolyzing) compare
CSW01_10255 -1.0 -1.4 cytochrome c-type biogenesis protein CcmH compare
CSW01_03325 -1.0 -2.0 porin compare
CSW01_09525 -1.0 -0.6 DNA translocase FtsK compare
CSW01_00025 -1.0 -1.3 membrane protein insertion efficiency factor YidD compare
CSW01_01015 -1.0 -6.9 DNA helicase II compare
CSW01_05020 -1.0 -3.8 regulatory protein ToxS compare
CSW01_08620 -1.0 -6.9 chromosome partition protein MukB compare
CSW01_06825 -0.9 -2.5 acylphosphatase compare
CSW01_09920 -0.9 -1.7 chromosome partitioning protein ParA compare
CSW01_08630 -0.9 -3.9 condensin subunit F compare
CSW01_16130 -0.9 -1.0 acetyltransferase compare
CSW01_15120 -0.9 -2.3 iron(III) ABC transporter permease compare
CSW01_17370 -0.9 -3.4 hypothetical protein compare
CSW01_17780 -0.9 -1.8 hypothetical protein compare
CSW01_02490 -0.9 -4.8 glutathione synthetase compare
CSW01_05890 -0.9 -4.6 hypothetical protein compare
CSW01_06315 -0.9 -3.2 DUF3943 domain-containing protein compare
CSW01_11690 -0.8 -5.1 hypothetical protein compare
CSW01_03475 -0.8 -2.9 ATP-dependent RNA helicase SrmB compare
CSW01_15755 -0.8 -1.8 hypothetical protein compare
CSW01_00650 -0.8 -4.3 tyrosine recombinase XerC compare
CSW01_08345 -0.8 -1.9 hypothetical protein compare
CSW01_15005 -0.8 -3.4 HNH endonuclease compare
CSW01_15680 -0.8 -1.4 DUF3265 domain-containing protein compare
CSW01_06810 -0.8 -0.9 hypothetical protein compare
CSW01_00500 -0.8 -6.4 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_03055 -0.8 -2.0 cytochrome c1 compare
CSW01_08435 -0.8 -3.3 phage shock protein PspA compare
CSW01_11535 -0.8 -2.7 thiamine-phosphate kinase compare
CSW01_15870 -0.8 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_10385 -0.7 -4.6 Fe(2+) transporter permease subunit FeoB compare
CSW01_15585 -0.7 -2.1 DUF645 domain-containing protein compare
CSW01_04285 -0.7 -1.9 toxin coregulated pilus biosynthesis protein R compare
CSW01_00280 -0.7 -4.3 shikimate dehydrogenase compare
CSW01_12365 -0.7 -1.8 inorganic phosphate transporter compare
CSW01_04390 -0.7 -1.3 outer membrane protein assembly factor BamE compare
CSW01_16590 -0.7 -1.1 N-acetyltransferase compare
CSW01_10875 -0.7 -2.3 redox-regulated ATPase YchF compare
CSW01_08675 -0.7 -1.4 DUF2007 domain-containing protein compare
CSW01_10390 -0.7 -1.8 ferrous iron transport protein A compare
CSW01_16785 -0.7 -1.7 hypothetical protein compare
CSW01_01995 -0.7 -4.4 iron-hydroxamate ABC transporter substrate-binding protein compare
CSW01_04315 -0.7 -3.0 TCP pilus virulence regulatory protein compare
CSW01_15060 -0.6 -1.2 hypothetical protein compare
CSW01_18525 -0.6 -1.6 integrase compare
CSW01_04375 -0.6 -1.8 SsrA-binding protein compare
CSW01_03075 -0.6 -1.4 phosphoheptose isomerase compare
CSW01_09250 -0.6 -0.7 crossover junction endodeoxyribonuclease RuvC compare
CSW01_05885 -0.6 -3.7 gonadoliberin III compare
CSW01_10190 -0.6 -2.1 nucleoid-associated protein compare
CSW01_11255 -0.6 -2.3 flagellar biosynthesis protein FlgP compare
CSW01_01845 -0.6 -3.8 protease modulator HflK compare
CSW01_05025 -0.6 -3.5 transcriptional regulator compare
CSW01_14965 -0.6 -0.8 hypothetical protein compare
CSW01_12770 -0.6 -3.5 ABC transporter permease compare
CSW01_12735 -0.6 -3.3 RidA family protein compare
CSW01_02450 -0.6 -3.4 pyrroline-5-carboxylate reductase compare
CSW01_14080 -0.6 -0.7 DUF3283 domain-containing protein compare
CSW01_05490 -0.6 -3.1 L-threonylcarbamoyladenylate synthase compare
CSW01_07145 -0.6 -1.3 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_00850 -0.6 -5.0 multidrug resistance protein compare
CSW01_19415 -0.6 -2.5 hypothetical protein compare
CSW01_11915 -0.6 -1.6 hypothetical protein compare
CSW01_10260 -0.6 -1.1 thiol:disulfide interchange protein DsbE compare
CSW01_07170 -0.6 -2.9 glucosaminidase compare
CSW01_00855 -0.6 -4.3 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_06005 -0.6 -3.1 vancomycin high temperature exclusion protein compare
CSW01_16325 -0.6 -1.0 hypothetical protein compare
CSW01_08625 -0.6 -2.1 chromosome partition protein MukE compare
CSW01_03915 -0.6 -1.3 Fe-S assembly protein IscX compare
CSW01_01855 -0.6 -1.6 DUF2065 domain-containing protein compare
CSW01_07230 -0.6 -2.6 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_19435 -0.6 -1.0 hypothetical protein compare
CSW01_00465 -0.6 -1.3 twin-arginine translocase subunit TatB compare
CSW01_10835 -0.6 -3.2 hypothetical protein compare
CSW01_08985 -0.6 -0.9 6-phospho-beta-glucosidase compare
CSW01_01350 -0.6 -4.9 polysaccharide biosynthesis protein compare
CSW01_03330 -0.6 -1.8 transcription elongation factor GreA compare
CSW01_15000 -0.6 -1.4 rfbP protein compare
CSW01_00095 -0.5 -1.1 hypothetical protein compare
CSW01_09520 -0.5 -2.1 disulfide bond formation protein B compare
CSW01_08260 -0.5 -2.1 hypothetical protein compare
CSW01_15535 -0.5 -2.3 NUDIX hydrolase compare
CSW01_10165 -0.5 -4.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_08830 -0.5 -1.7 integrase compare
CSW01_07210 -0.5 -1.5 hypothetical protein compare
CSW01_16575 -0.5 -1.8 acetyltransferase compare
CSW01_05630 -0.5 -3.3 replication-associated recombination protein A compare
CSW01_16310 -0.5 -0.9 DUF3709 domain-containing protein compare
CSW01_03975 -0.5 -1.9 exodeoxyribonuclease VII large subunit compare
CSW01_15425 -0.5 -0.9 DUF3265 domain-containing protein compare
CSW01_18205 -0.5 -3.2 dehydratase compare
CSW01_16570 -0.5 -1.1 N-acetyltransferase compare
CSW01_05370 -0.5 -0.8 YbaB/EbfC family nucleoid-associated protein compare
CSW01_07620 -0.5 -1.4 DUF3305 domain-containing protein compare
CSW01_01875 -0.5 -1.6 hypothetical protein compare
CSW01_11410 -0.5 -1.0 nitrogen regulatory protein P-II compare
CSW01_11080 -0.5 -2.6 transcriptional regulator compare
CSW01_18030 -0.5 -2.2 hypothetical protein compare
CSW01_07160 -0.5 -2.0 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_14455 -0.5 -1.6 hypothetical protein compare
CSW01_11755 -0.5 -2.8 murein transglycosylase compare
CSW01_02875 -0.5 -2.2 DNA recombination/repair protein RecA compare
CSW01_07825 -0.5 -2.2 LacI family transcriptional regulator compare
CSW01_17410 -0.5 -1.3 transporter compare
CSW01_18315 -0.5 -1.8 methyltransferase compare
CSW01_00495 -0.5 -0.6 SOS-response transcriptional repressor compare
CSW01_08705 -0.5 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_04195 -0.5 -3.1 class I SAM-dependent methyltransferase compare
CSW01_01800 -0.5 -0.9 tRNA-Met compare
CSW01_02440 -0.5 -2.4 YggU family protein compare
CSW01_10340 -0.5 -1.7 MinD/ParA family protein compare
CSW01_10245 -0.5 -1.5 ABC transporter compare
CSW01_08515 -0.5 -1.4 trimethylamine N-oxide reductase system protein TorE compare
CSW01_06420 -0.5 -2.3 DUF2982 domain-containing protein compare
CSW01_10420 -0.5 -1.8 succinyl-CoA ligase subunit beta compare
CSW01_03850 -0.5 -3.0 tRNA guanosine(34) transglycosylase Tgt compare
CSW01_14810 -0.5 -1.6 tryptophanase leader peptide compare
CSW01_16270 -0.5 -1.3 DUF3709 domain-containing protein compare
CSW01_14055 -0.4 -1.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_04260 -0.4 -1.7 pilus assembly protein compare
CSW01_00900 -0.4 -1.0 hypothetical protein compare
CSW01_12130 -0.4 -2.3 DUF721 domain-containing protein compare
CSW01_05355 -0.4 -2.5 DUF454 domain-containing protein compare
CSW01_10285 -0.4 -0.9 heme exporter protein CcmB compare
CSW01_17215 -0.4 -1.9 multidrug transporter compare
CSW01_05280 -0.4 -2.1 uridine kinase compare
CSW01_02390 -0.4 -0.9 tRNA-Thr compare
CSW01_05195 -0.4 -1.7 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_12200 -0.4 -1.1 ribosomal RNA small subunit methyltransferase H compare
CSW01_13620 -0.4 -3.5 aspartate ammonia-lyase compare
CSW01_06945 -0.4 -1.7 hypothetical protein compare
CSW01_16195 -0.4 -0.7 DUF645 domain-containing protein compare
CSW01_17060 -0.4 -1.1 DUF2861 domain-containing protein compare
CSW01_08195 -0.4 -1.6 ABC transporter ATP-binding protein compare
CSW01_05880 -0.4 -2.6 alpha-L-glutamate ligase-like protein compare
CSW01_18375 -0.4 -2.5 GGDEF domain-containing protein compare
CSW01_03840 -0.4 -2.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
CSW01_11230 -0.4 -1.5 chemotaxis protein methyltransferase 1 compare
CSW01_12785 -0.4 -2.6 calcium/sodium antiporter compare
CSW01_04940 -0.4 -0.5 hypothetical protein compare
CSW01_04320 -0.4 -2.8 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_05305 -0.4 -1.8 long-chain fatty acid transporter compare
CSW01_18545 -0.4 -2.5 non-hemolytic enterotoxin lytic component L1 compare
CSW01_17080 -0.4 -1.1 DUF3319 domain-containing protein compare
CSW01_13425 -0.4 -3.6 fumarate reductase (quinol) flavoprotein subunit compare
CSW01_01850 -0.4 -1.9 protease modulator HflC compare
CSW01_18060 -0.4 -1.4 allophanate hydrolase compare
CSW01_00450 -0.4 -0.8 SCP2 domain-containing protein compare
CSW01_10290 -0.4 -1.2 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_00540 -0.4 -1.0 hypothetical protein compare
CSW01_11440 -0.4 -2.3 ribonuclease HII compare
CSW01_03095 -0.4 -1.2 hypothetical protein compare
CSW01_05480 -0.4 -1.6 hypothetical protein compare
CSW01_07200 -0.4 -0.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_09080 -0.4 -2.3 transcriptional regulator compare
CSW01_17605 -0.4 -1.3 DNA-binding response regulator compare
CSW01_01195 -0.4 -0.7 ADP-heptose--LPS heptosyltransferase I compare
CSW01_16040 -0.4 -1.9 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_09495 -0.4 -1.1 histidine triad nucleotide-binding protein compare
CSW01_06585 -0.4 -0.9 fumarate hydratase compare
CSW01_07715 -0.4 -1.0 lipoprotein NlpC compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_aerobic_phage experiments

For lb_aerobic_phage LB across organisms