Experiment set5IT064 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_11480 -3.7 -3.4 hypothetical protein compare
IAI47_15970 -3.5 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_02350 -3.3 -1.4 tRNA-Thr compare
IAI47_09040 -3.1 -2.1 NAD-dependent epimerase compare
IAI47_07020 -3.0 -1.7 hypothetical protein compare
IAI47_04865 -2.9 -2.5 SoxR-reducing system protein RseC compare
IAI47_09580 -2.9 -4.1 FNR family transcription factor compare
IAI47_00770 -2.8 -1.2 general stress protein compare
IAI47_17560 -2.8 -1.8 ROK family transcriptional regulator compare
IAI47_00870 -2.6 -1.1 50S ribosomal protein L31 compare
IAI47_07470 -2.6 -2.6 AlpA family transcriptional regulator compare
IAI47_00760 -2.5 -4.0 envelope stress response regulator transcription factor CpxR compare
IAI47_09415 -2.5 -10.8 YcjX family protein compare
IAI47_04300 -2.5 -7.4 recombinase RecA compare
IAI47_03820 -2.5 -4.6 site-specific tyrosine recombinase XerD compare
IAI47_06325 -2.4 -6.8 acetate kinase compare
IAI47_06940 -2.3 -0.9 tyrosine-protein kinase Wzc compare
IAI47_11760 -2.3 -1.5 TonB-dependent siderophore receptor compare
IAI47_00300 -2.3 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_17020 -2.2 -3.6 30S ribosome-binding factor RbfA compare
IAI47_09420 -2.2 -9.1 TIGR01620 family protein compare
IAI47_21880 -2.2 -0.9 ParA family protein compare
IAI47_09390 -2.2 -8.3 phage shock protein operon transcriptional activator compare
IAI47_10320 -2.1 -0.9 Rrf2 family transcriptional regulator compare
IAI47_17185 -2.1 -8.2 RNA polymerase factor sigma-54 compare
IAI47_17120 -2.1 -3.2 BolA family iron metabolism protein IbaG compare
IAI47_04835 -2.1 -8.5 ATP-dependent RNA helicase SrmB compare
IAI47_11500 -2.1 -2.4 type VI secretion system tip protein VgrG compare
IAI47_00780 -2.0 -4.7 6-phosphofructokinase compare
IAI47_00735 -2.0 -2.1 protein-export chaperone SecB compare
IAI47_13840 -1.9 -3.1 replication initiation negative regulator SeqA compare
IAI47_12880 -1.9 -12.6 formate C-acetyltransferase compare
IAI47_00430 -1.8 -11.8 DNA polymerase I compare
IAI47_16085 -1.8 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_09100 -1.8 -9.0 cardiolipin synthase compare
IAI47_06595 -1.7 -3.7 hypothetical protein compare
IAI47_07165 -1.7 -1.9 exodeoxyribonuclease I compare
IAI47_15110 -1.7 -5.3 chromophore lyase compare
IAI47_13740 -1.6 -1.5 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_17035 -1.6 -2.5 ribosome maturation factor RimP compare
IAI47_02585 -1.6 -3.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_08045 -1.6 -1.7 NUDIX domain-containing protein compare
IAI47_12885 -1.5 -5.2 pyruvate formate lyase 1-activating protein compare
IAI47_15605 -1.5 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_06395 -1.5 -1.3 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_09635 -1.5 -4.0 hypothetical protein compare
IAI47_09120 -1.5 -2.0 hypothetical protein compare
IAI47_01120 -1.5 -7.6 manganese efflux pump MntP compare
IAI47_09055 -1.4 -7.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_13180 -1.4 -3.8 manganese-binding transcriptional regulator MntR compare
IAI47_12645 -1.4 -3.1 porin OmpA compare
IAI47_07010 -1.4 -1.6 ABC transporter permease compare
IAI47_10755 -1.4 -1.3 DUF1289 domain-containing protein compare
IAI47_09955 -1.4 -3.4 SDR family oxidoreductase compare
IAI47_19940 -1.4 -2.7 hypothetical protein compare
IAI47_07885 -1.3 -1.0 tRNA-Asn compare
IAI47_01820 -1.3 -5.9 two-component system response regulator OmpR compare
IAI47_07525 -1.3 -2.0 conjugal transfer protein TraD compare
IAI47_03610 -1.3 -3.9 YqgE/AlgH family protein compare
IAI47_03240 -1.3 -3.0 TonB system transport protein ExbD compare
IAI47_09360 -1.2 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_19945 -1.2 -0.7 hypothetical protein compare
IAI47_18215 -1.2 -1.2 Trk system potassium transporter TrkH compare
IAI47_04400 -1.2 -4.1 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_05325 -1.2 -2.1 DUF1471 domain-containing protein compare
IAI47_03375 -1.2 -6.7 peptide chain release factor 3 compare
IAI47_17910 -1.2 -2.9 chorismate lyase compare
IAI47_08085 -1.2 -3.5 helix-turn-helix domain-containing protein compare
IAI47_15595 -1.2 -1.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_05420 -1.1 -1.0 PTS glucose transporter subunit IIA compare
IAI47_06655 -1.1 -2.1 1-phosphofructokinase compare
IAI47_16990 -1.1 -2.8 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_02090 -1.1 -2.8 elongation factor Tu compare
IAI47_01825 -1.1 -5.7 two-component system sensor histidine kinase EnvZ compare
IAI47_14470 -1.1 -1.6 YbaB/EbfC family nucleoid-associated protein compare
IAI47_01365 -1.1 -1.4 inorganic phosphate transporter PitA compare
IAI47_21450 -1.1 -1.0 general stress protein compare
IAI47_13850 -1.1 -2.8 LexA regulated protein compare
IAI47_17005 -1.1 -4.6 polyribonucleotide nucleotidyltransferase compare
IAI47_11535 -1.0 -1.8 DcrB-related protein compare
IAI47_17215 -1.0 -0.7 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_06900 -1.0 -2.2 phosphatase PAP2 family protein compare
IAI47_05155 -1.0 -7.6 polyphosphate kinase 1 compare
IAI47_10835 -1.0 -0.6 tRNA-Val compare
IAI47_06475 -1.0 -3.4 transcriptional regulator RcsB compare
IAI47_19380 -1.0 -2.6 hypothetical protein compare
IAI47_02515 -1.0 -2.9 transcriptional regulator ArgR compare
IAI47_08200 -1.0 -2.1 hypothetical protein compare
IAI47_21830 -1.0 -1.1 hypothetical protein compare
IAI47_11880 -1.0 -1.3 hypothetical protein compare
IAI47_13935 -1.0 -0.8 tRNA-Gln compare
IAI47_11425 -1.0 -2.4 hypothetical protein compare
IAI47_18145 -1.0 -1.1 elongation factor Tu compare
IAI47_08450 -0.9 -1.6 Holliday junction branch migration DNA helicase RuvB compare
IAI47_18830 -0.9 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_17645 -0.9 -2.2 hypothetical protein compare
IAI47_07180 -0.9 -4.3 DUF496 family protein compare
IAI47_14945 -0.9 -2.3 pyrroline-5-carboxylate reductase compare
IAI47_07930 -0.9 -1.1 DUF2158 domain-containing protein compare
IAI47_04800 -0.9 -0.7 RnfH family protein compare
IAI47_07015 -0.9 -3.2 ABC transporter ATP-binding protein compare
IAI47_06320 -0.9 -2.8 phosphate acetyltransferase compare
IAI47_10415 -0.9 -2.5 ABC transporter permease compare
IAI47_13050 -0.9 -2.9 YbjN domain-containing protein compare
IAI47_03135 -0.9 -3.4 outer membrane channel protein TolC compare
IAI47_06965 -0.9 -1.0 glycosyltransferase family 2 protein compare
IAI47_08105 -0.9 -1.6 DinI family protein compare
IAI47_09265 -0.9 -1.7 LapA family protein compare
IAI47_09405 -0.9 -2.6 envelope stress response membrane protein PspC compare
IAI47_06910 -0.8 -3.2 dCTP deaminase compare
IAI47_20115 -0.8 -2.7 DUF1090 domain-containing protein compare
IAI47_10840 -0.8 -1.9 pyruvate kinase PykF compare
IAI47_04335 -0.8 -1.8 tRNA-Arg compare
IAI47_14390 -0.8 -3.4 NfeD family protein compare
IAI47_18485 -0.8 -5.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_15155 -0.8 -2.7 DUF943 family protein compare
IAI47_05765 -0.8 -1.2 hypothetical protein compare
IAI47_09235 -0.8 -0.7 type I DNA topoisomerase compare
IAI47_05755 -0.8 -2.1 hypothetical protein compare
IAI47_16995 -0.8 -0.8 protein YrbN compare
IAI47_04925 -0.8 -6.1 membrane-bound lytic murein transglycosylase MltF compare
IAI47_06980 -0.8 -2.0 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_00465 -0.8 -1.2 ribosome-dependent GTPase TypA compare
IAI47_18480 -0.8 -4.5 lipid III flippase WzxE compare
IAI47_17580 -0.8 -3.6 hypothetical protein compare
IAI47_11600 -0.8 -2.6 protein of avirulence locus ImpE compare
IAI47_02040 -0.8 -4.2 peptidylprolyl isomerase compare
IAI47_18755 -0.8 -3.3 glutathione S-transferase compare
IAI47_12665 -0.8 -1.8 ribosome modulation factor compare
IAI47_08445 -0.8 -0.5 Holliday junction branch migration protein RuvA compare
IAI47_11415 -0.8 -0.8 hypothetical protein compare
IAI47_01000 -0.8 -6.0 HTH-type transcriptional regulator HdfR compare
IAI47_20640 -0.8 -2.8 hypothetical protein compare
IAI47_14295 -0.8 -1.5 hypothetical protein compare
IAI47_19850 -0.8 -2.1 hypothetical protein compare
IAI47_11510 -0.8 -1.8 hypothetical protein compare
IAI47_04870 -0.8 -2.6 elongation factor 4 compare
IAI47_08635 -0.8 -2.7 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_20195 -0.8 -2.4 LysR family transcriptional regulator compare
IAI47_04695 -0.8 -2.3 hypothetical protein compare
IAI47_17235 -0.8 -4.4 stringent starvation protein A compare
IAI47_19900 -0.8 -2.3 amino acid ABC transporter ATP-binding protein compare
IAI47_07955 -0.7 -1.6 protein DsrB compare
IAI47_08845 -0.7 -0.8 cell division topological specificity factor MinE compare
IAI47_09395 -0.7 -1.5 phage shock protein PspA compare
IAI47_01750 -0.7 -3.0 glycerol-3-phosphate dehydrogenase compare
IAI47_04505 -0.7 -4.0 transcriptional repressor MprA compare
IAI47_16825 -0.7 -4.0 ribonuclease E inhibitor RraB compare
IAI47_09450 -0.7 -2.9 L-Ala-D/L-Glu epimerase compare
IAI47_19105 -0.7 -2.8 hypothetical protein compare
IAI47_20175 -0.7 -2.5 ABC transporter ATP-binding protein compare
IAI47_11375 -0.7 -0.8 hypothetical protein compare
IAI47_16930 -0.7 -2.8 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_08730 -0.7 -1.6 YebO family protein compare
IAI47_06245 -0.7 -1.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_10775 -0.7 -2.0 ribonuclease T compare
IAI47_16600 -0.7 -1.1 tRNA-OTHER compare
IAI47_12030 -0.7 -4.3 PTS glucose transporter subunit IIBC compare
IAI47_14410 -0.7 -3.0 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
IAI47_06415 -0.7 -2.2 NADH-quinone oxidoreductase subunit M compare
IAI47_08065 -0.7 -2.2 acyltransferase compare
IAI47_11310 -0.7 -1.5 redox-regulated ATPase YchF compare
IAI47_19080 -0.7 -2.2 hypothetical protein compare
IAI47_01325 -0.7 -4.9 glutathione-disulfide reductase compare
IAI47_11540 -0.7 -1.5 type VI secretion system tip protein VgrG compare
IAI47_18240 -0.7 -1.4 NAD(P)H-flavin reductase compare
IAI47_08680 -0.7 -3.2 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_10520 -0.7 -1.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_06455 -0.7 -1.9 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_03615 -0.7 -3.2 glutathione synthase compare
IAI47_12655 -0.6 -3.8 Lon protease family protein compare
IAI47_18405 -0.6 -2.6 DUF484 domain-containing protein compare
IAI47_14920 -0.6 -3.1 pyrimidine/purine nucleoside phosphorylase compare
IAI47_12270 -0.6 -2.5 YceK/YidQ family lipoprotein compare
IAI47_03680 -0.6 -4.1 transketolase compare
IAI47_08850 -0.6 -2.0 septum site-determining protein MinD compare
IAI47_10545 -0.6 -0.9 hypothetical protein compare
IAI47_09010 -0.6 -2.7 formyltetrahydrofolate deformylase compare
IAI47_09285 -0.6 -1.8 osmotically-inducible lipoprotein OsmB compare
IAI47_17965 -0.6 -4.4 glucose-6-phosphate isomerase compare
IAI47_12760 -0.6 -3.8 porin OmpF compare
IAI47_19295 -0.6 -1.0 hypothetical protein compare
IAI47_09925 -0.6 -2.4 gamma-glutamylcyclotransferase compare
IAI47_02265 -0.6 -3.2 alternative ribosome-rescue factor A compare
IAI47_05035 -0.6 -1.4 nucleoside-diphosphate kinase compare
IAI47_06135 -0.6 -1.4 phosphohistidine phosphatase SixA compare
IAI47_02260 -0.6 -2.4 Zn(2+)-responsive transcriptional regulator compare
IAI47_19000 -0.6 -1.9 DHCW motif cupin fold protein compare
IAI47_20550 -0.6 -1.5 ABC transporter permease compare
IAI47_14660 -0.6 -3.1 trigger factor compare
IAI47_07070 -0.6 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_02035 -0.6 -1.3 YheV family putative metal-binding protein compare
IAI47_21235 -0.6 -0.7 hypothetical protein compare
IAI47_02380 -0.6 -0.7 DNA-binding transcriptional regulator Fis compare
IAI47_08590 -0.6 -1.0 hypothetical protein compare
IAI47_18590 -0.6 -4.2 biofilm formation regulator HmsP compare
IAI47_12875 -0.6 -2.9 formate transporter FocA compare
IAI47_19455 -0.6 -2.1 MBL fold metallo-hydrolase compare
IAI47_19365 -0.6 -2.1 DUF1471 domain-containing protein compare
IAI47_05200 -0.6 -1.8 arsenate reductase (glutaredoxin) compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms