Experiment set5IT064 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Potassium iodide 30 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS10285 +1.8 6.1 membrane protein compare
BBR_RS14400 +1.7 15.3 acetyltransferase compare
BBR_RS12500 +1.0 1.7 sugar ABC transporter permease compare
BBR_RS17440 +0.9 1.3 DUF3027 domain-containing protein compare
BBR_RS11470 +0.8 1.5 6-phosphogluconolactonase compare
BBR_RS20430 +0.8 1.9 hypothetical protein compare
BBR_RS14985 +0.8 3.2 ATP-dependent DNA helicase PcrA compare
BBR_RS20840 +0.8 2.3 hypothetical protein compare
BBR_RS20480 +0.8 0.9 membrane protein compare
BBR_RS19055 +0.7 2.2 ferredoxin family protein compare
BBR_RS20810 +0.7 2.8 pirin compare
BBR_RS18120 +0.7 1.8 hypothetical protein compare
BBR_RS11590 +0.7 0.8 30S ribosomal protein S18 compare
BBR_RS20780 +0.6 2.6 hypothetical protein compare
BBR_RS20920 +0.6 3.7 hypothetical protein compare
BBR_RS14220 +0.6 4.2 phosphomannomutase compare
BBR_RS17650 +0.6 1.5 cell filamentation protein Fic compare
BBR_RS17415 +0.6 2.3 hypothetical protein compare
BBR_RS20925 +0.6 1.7 amino acid permease compare
BBR_RS19905 +0.6 0.8 methionine--tRNA ligase compare
BBR_RS10740 +0.6 1.4 tRNA-Gly compare
BBR_RS16440 +0.5 2.0 SGNH/GDSL hydrolase family protein compare
BBR_RS17680 +0.5 2.2 hypothetical protein compare
BBR_RS10555 +0.5 1.0 DUF3073 domain-containing protein compare
BBR_RS18755 +0.5 1.0 30S ribosome-binding factor RbfA compare
BBR_RS21100 +0.5 1.5 hypothetical protein compare
BBR_RS12830 +0.5 3.5 G5 domain-containing protein compare
BBR_RS10720 +0.5 4.2 PDZ domain-containing protein compare
BBR_RS20750 +0.5 1.8 GntR family transcriptional regulator compare
BBR_RS11205 +0.5 2.7 HPr family phosphocarrier protein compare
BBR_RS11210 +0.4 3.8 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS10665 +0.4 4.2 DUF2156 domain-containing protein compare
BBR_RS18695 +0.4 3.3 PRD domain-containing protein compare
BBR_RS20795 +0.4 1.2 cystathionine gamma-lyase compare
BBR_RS16100 +0.4 2.0 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein compare
BBR_RS20870 +0.4 1.5 hypothetical protein compare
BBR_RS13580 +0.4 1.4 nodulation protein L compare
BBR_RS17075 +0.4 2.8 dihydrodipicolinate synthase family protein compare
BBR_RS12515 +0.4 3.1 LacI family transcriptional regulator compare
BBR_RS13655 +0.4 2.4 hypothetical protein compare
BBR_RS20170 +0.4 3.3 LacI family transcriptional regulator compare
BBR_RS15820 +0.4 2.2 SOS response-associated peptidase compare
BBR_RS13540 +0.4 2.5 alcohol dehydrogenase compare
BBR_RS16175 +0.4 1.4 DNA integration/recombination/inversion protein compare
BBR_RS16855 +0.4 1.4 NUDIX domain-containing protein compare
BBR_RS18170 +0.3 0.8 dihydropteroate synthase compare
BBR_RS20760 +0.3 0.7 hypothetical protein compare
BBR_RS16170 +0.3 0.8 hypothetical protein compare
BBR_RS20710 +0.3 2.0 hypothetical protein compare
BBR_RS14045 +0.3 2.1 GntR family transcriptional regulator compare
BBR_RS17945 +0.3 1.9 nucleoside deoxyribosyltransferase compare
BBR_RS20970 +0.3 2.3 integrase compare
BBR_RS12295 +0.3 0.6 RNA-binding protein compare
BBR_RS12775 +0.3 1.8 hypothetical protein compare
BBR_RS11640 +0.3 0.9 hypothetical protein compare
BBR_RS19800 +0.3 2.9 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS21020 +0.3 1.7 transposase compare
BBR_RS13075 +0.3 2.0 23S rRNA pseudouridylate synthase compare
BBR_RS16895 +0.3 2.4 MFS transporter compare
BBR_RS16870 +0.3 2.1 ROK family protein compare
BBR_RS13525 +0.3 1.6 CrcB family protein compare
BBR_RS20850 +0.3 0.4 resolvase compare
BBR_RS16865 +0.3 2.4 glucosamine-6-phosphate deaminase compare
BBR_RS12715 +0.3 1.6 helix-turn-helix domain-containing protein compare
BBR_RS17065 +0.3 2.1 aldo/keto reductase compare
BBR_RS16835 +0.3 1.7 cell wall biosynthesis-associated protein compare
BBR_RS17880 +0.3 1.1 nucleotidyltransferase compare
BBR_RS15220 +0.3 2.0 trimeric intracellular cation channel family protein compare
BBR_RS10980 +0.3 2.5 TetR/AcrR family transcriptional regulator compare
BBR_RS13255 +0.3 1.4 hypothetical protein compare
BBR_RS12880 +0.3 2.2 Crp/Fnr family transcriptional regulator compare
BBR_RS18525 +0.3 1.3 hypothetical protein compare
BBR_RS15845 +0.3 0.2 hypothetical protein compare
BBR_RS20320 +0.3 2.8 PTS ascorbate transporter subunit IIC compare
BBR_RS15935 +0.3 1.4 hypothetical protein compare
BBR_RS16580 +0.3 1.9 EamA/RhaT family transporter compare
BBR_RS20835 +0.3 1.3 hypothetical protein compare
BBR_RS14815 +0.3 1.9 D-hexose-6-phosphate mutarotase compare
BBR_RS20325 +0.3 2.3 PTS lactose transporter subunit IIB compare
BBR_RS15755 +0.3 0.5 hypothetical protein compare
BBR_RS14085 +0.3 1.0 nicotinate-nucleotide adenylyltransferase compare
BBR_RS17060 +0.3 1.7 acylphosphatase compare
BBR_RS18700 +0.3 2.3 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS20330 +0.3 2.2 PTS sugar transporter subunit IIA compare
BBR_RS21050 +0.3 1.1 hypothetical protein compare
BBR_RS15215 +0.3 1.7 MazG-like protein compare
BBR_RS14120 +0.3 1.9 aldo/keto reductase compare
BBR_RS13960 +0.3 0.8 thiamine biosynthesis protein ThiS compare
BBR_RS17080 +0.3 1.8 hypothetical protein compare
BBR_RS16300 +0.3 1.6 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS13220 +0.3 1.5 hypothetical protein compare
BBR_RS21025 +0.3 1.6 hypothetical protein compare
BBR_RS20085 +0.3 2.1 histidine phosphatase family protein compare
BBR_RS21160 +0.3 2.5 DUF2961 domain-containing protein compare
BBR_RS20860 +0.3 1.2 hypothetical protein compare
BBR_RS12300 +0.3 0.9 30S ribosomal protein S16 compare
BBR_RS16000 +0.3 1.8 hypothetical protein compare
BBR_RS18645 +0.3 2.1 DNA-binding response regulator compare
BBR_RS12600 +0.3 1.7 serine acetyltransferase compare
BBR_RS14425 +0.3 1.8 histidine phosphatase family protein compare
BBR_RS13700 +0.3 1.7 diaminopimelate epimerase compare
BBR_RS18480 +0.3 2.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS14850 +0.3 0.9 VOC family protein compare
BBR_RS12245 +0.3 0.7 polyribonucleotide nucleotidyltransferase compare
BBR_RS20545 +0.3 1.6 hypothetical protein compare
BBR_RS13300 +0.3 0.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS11665 +0.3 0.8 hypothetical protein compare
BBR_RS12620 +0.3 2.0 glycosyltransferase family 1 protein compare
BBR_RS19360 +0.3 1.6 hypothetical protein compare
BBR_RS14160 +0.3 1.0 peptidylprolyl isomerase compare
BBR_RS16345 +0.3 2.1 hypothetical protein compare
BBR_RS14910 +0.3 1.7 E1-E2 ATPase compare
BBR_RS13435 +0.3 1.8 hypothetical protein compare
BBR_RS17215 +0.2 1.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BBR_RS18445 +0.2 1.5 hypothetical protein compare
BBR_RS16165 +0.2 1.3 M23 family peptidase compare
BBR_RS20230 +0.2 2.2 hypothetical protein compare
BBR_RS16020 +0.2 0.8 hypothetical protein compare
BBR_RS15100 +0.2 2.0 murein L,D-transpeptidase compare
BBR_RS19440 +0.2 2.2 polysaccharide deacetylase family protein compare
BBR_RS10890 +0.2 1.9 LacI family transcriptional regulator compare
BBR_RS14605 +0.2 2.0 ABC transporter permease compare
BBR_RS20125 +0.2 2.0 SIR2 family protein compare
BBR_RS13390 +0.2 0.9 hypothetical protein compare
BBR_RS15295 +0.2 1.3 Cof-type HAD-IIB family hydrolase compare
BBR_RS16510 +0.2 1.9 anthranilate phosphoribosyltransferase compare
BBR_RS14600 +0.2 1.5 ABC transporter ATP-binding protein compare
BBR_RS17055 +0.2 1.7 histidinol dehydrogenase compare
BBR_RS20905 +0.2 1.2 hypothetical protein compare
BBR_RS14460 +0.2 1.5 amidohydrolase compare
BBR_RS17110 +0.2 1.5 oleate hydratase compare
BBR_RS14940 +0.2 1.5 hypothetical protein compare
BBR_RS17240 +0.2 1.7 hypothetical protein compare
BBR_RS16760 +0.2 1.6 glycerate kinase compare
BBR_RS15465 +0.2 1.4 DUF2974 domain-containing protein compare
BBR_RS13535 +0.2 1.5 MerR family DNA-binding transcriptional regulator compare
BBR_RS15695 +0.2 1.3 membrane channel protein compare
BBR_RS12165 +0.2 1.8 ATP-binding protein compare
BBR_RS13430 +0.2 1.5 hypothetical protein compare
BBR_RS17195 +0.2 1.2 hypothetical protein compare
BBR_RS14960 +0.2 1.1 alpha/beta hydrolase compare
BBR_RS17675 +0.2 1.7 ATP-binding protein compare
BBR_RS16560 +0.2 1.4 hypothetical protein compare
BBR_RS14320 +0.2 1.6 Nif3-like dinuclear metal center hexameric protein compare
BBR_RS15890 +0.2 1.4 DNA-binding response regulator compare
BBR_RS17690 +0.2 1.3 CRISPR-associated endonuclease Cas2 compare
BBR_RS13505 +0.2 0.9 DUF4391 domain-containing protein compare
BBR_RS17275 +0.2 1.3 nitroreductase compare
BBR_RS16035 +0.2 0.9 hypothetical protein compare
BBR_RS19115 +0.2 0.7 hypothetical protein compare
BBR_RS15665 +0.2 0.7 preprotein translocase subunit YajC compare
BBR_RS15030 +0.2 0.8 mRNA interferase PemK compare
BBR_RS17590 +0.2 0.9 PTS sugar transporter subunit IIA compare
BBR_RS14610 +0.2 0.8 DNA-binding response regulator compare
BBR_RS18770 +0.2 1.8 hypothetical protein compare
BBR_RS13465 +0.2 1.6 glycosyl transferase compare
BBR_RS19965 +0.2 1.2 transposase compare
BBR_RS16880 +0.2 1.5 ROK family transcriptional regulator compare
BBR_RS16240 +0.2 0.7 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS12315 +0.2 1.6 cation transporter compare
BBR_RS18175 +0.2 0.1 GTP cyclohydrolase I FolE compare
BBR_RS20030 +0.2 1.4 IS5/IS1182 family transposase compare
BBR_RS20060 +0.2 1.4 DUF624 domain-containing protein compare
BBR_RS12995 +0.2 1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS10400 +0.2 1.8 carbohydrate ABC transporter permease compare
BBR_RS13335 +0.2 1.1 transcriptional repressor compare
BBR_RS14930 +0.2 1.3 DNA-binding protein, also contains divergent AAA domain for ATP binding (DNA helicase) compare
BBR_RS15420 +0.2 1.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
BBR_RS11500 +0.2 1.7 glycosyltransferase family 2 protein compare
BBR_RS17795 +0.2 1.6 MFS transporter compare
BBR_RS14285 +0.2 1.3 excinuclease ABC subunit UvrB compare
BBR_RS20855 +0.2 0.8 hypothetical protein compare
BBR_RS16185 +0.2 1.4 transposase compare
BBR_RS13015 +0.2 1.2 peptide deformylase compare
BBR_RS20080 +0.2 1.8 ABC transporter substrate-binding protein compare
BBR_RS18790 +0.2 1.8 hypothetical protein compare
BBR_RS12395 +0.2 1.5 hypothetical protein compare
BBR_RS16030 +0.2 1.2 hypothetical protein compare
BBR_RS16145 +0.2 1.0 hypothetical protein compare
BBR_RS16700 +0.2 1.4 ABC transporter ATP-binding protein compare
BBR_RS17120 +0.2 1.2 DUF4186 domain-containing protein compare
BBR_RS12760 +0.2 1.1 hypothetical protein compare
BBR_RS20965 +0.2 0.9 MFS transporter compare
BBR_RS20255 +0.2 1.7 PTS N-acetylglucosamine transporter subunit IIABC compare
BBR_RS17085 +0.2 1.4 KR domain-containing protein compare
BBR_RS14965 +0.2 0.8 DUF2975 domain-containing protein compare
BBR_RS13240 +0.2 1.4 sugar ABC transporter substrate-binding protein compare
BBR_RS16805 +0.2 1.3 aldose 1-epimerase compare
BBR_RS18625 +0.2 1.6 alpha/beta hydrolase compare
BBR_RS17365 +0.2 0.9 ABC transporter permease compare
BBR_RS14645 +0.2 1.0 amino acid ABC transporter permease compare
BBR_RS16595 +0.2 1.0 N-acetyltransferase compare
BBR_RS15560 +0.2 1.1 aminotransferase class V-fold PLP-dependent enzyme compare
BBR_RS14875 +0.2 1.2 uracil-xanthine permease compare
BBR_RS13765 +0.2 1.5 alpha/beta hydrolase compare
BBR_RS16155 +0.2 1.4 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS13315 +0.2 1.2 hypothetical protein compare
BBR_RS12550 +0.2 1.5 sugar transferase compare
BBR_RS13590 +0.2 1.0 hypothetical protein compare
BBR_RS17260 +0.2 1.2 Sucrose permease compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Potassium iodide across organisms