Experiment set5IT063 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium bromate 0.05 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_623 -4.4 -1.9 FIG00954674: hypothetical protein compare
Pf6N2E2_178 -4.0 -1.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5086 -3.9 -1.7 hypothetical protein compare
Pf6N2E2_2487 -3.7 -1.6 FIG00956090: hypothetical protein compare
Pf6N2E2_5527 -3.6 -2.4 Cold shock protein CspC compare
Pf6N2E2_659 -3.4 -2.6 Transcriptional regulatory protein ompR compare
Pf6N2E2_2984 -3.3 -2.4 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5068 -3.3 -11.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3328 -3.2 -2.6 transcriptional regulator compare
Pf6N2E2_384 -3.2 -2.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_754 -3.0 -1.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5536 -3.0 -2.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3665 -2.9 -1.2 serine/threonine protein kinase compare
Pf6N2E2_127 -2.9 -1.7 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_238 -2.8 -2.7 hypothetical protein compare
Pf6N2E2_2480 -2.8 -1.6 FIG00957636: hypothetical protein compare
Pf6N2E2_4077 -2.8 -2.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_6038 -2.6 -3.0 hypothetical protein compare
Pf6N2E2_3461 -2.6 -2.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3782 -2.6 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5705 -2.6 -2.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3941 -2.5 -2.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2367 -2.5 -1.7 hypothetical protein compare
Pf6N2E2_1776 -2.4 -2.2 Chemotaxis protein CheD compare
Pf6N2E2_4531 -2.4 -1.4 hypothetical protein compare
Pf6N2E2_5987 -2.3 -5.0 OmpA family protein compare
Pf6N2E2_4057 -2.3 -0.9 lipoprotein, putative compare
Pf6N2E2_4071 -2.2 -3.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5069 -2.2 -4.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3226 -2.2 -2.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_482 -2.1 -1.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_600 -2.1 -2.6 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3611 -2.1 -1.4 HflC protein compare
Pf6N2E2_3326 -2.1 -1.4 hypothetical protein compare
Pf6N2E2_3300 -2.1 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_546 -2.1 -2.1 FIG00966904: hypothetical protein compare
Pf6N2E2_639 -2.1 -3.4 FIG01285020: hypothetical protein compare
Pf6N2E2_5339 -2.0 -5.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4541 -2.0 -1.2 hypothetical protein compare
Pf6N2E2_5014 -2.0 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4678 -2.0 -1.2 hypothetical protein compare
Pf6N2E2_622 -2.0 -4.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3942 -2.0 -7.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2402 -2.0 -2.1 hypothetical protein compare
Pf6N2E2_3062 -2.0 -3.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_927 -2.0 -2.1 (AJ250023) putative polyketide synthase compare
Pf6N2E2_3100 -2.0 -2.7 FIG00953063: hypothetical protein compare
Pf6N2E2_3017 -2.0 -2.8 hypothetical protein compare
Pf6N2E2_737 -2.0 -1.4 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_5430 -2.0 -6.8 Transglycosylase, Slt family compare
Pf6N2E2_5455 -2.0 -2.0 hypothetical protein compare
Pf6N2E2_648 -1.9 -1.9 General secretion pathway protein K compare
Pf6N2E2_234 -1.9 -2.7 FIG00454312: hypothetical protein compare
Pf6N2E2_2311 -1.9 -5.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4499 -1.9 -2.4 protein of unknown function DUF86 compare
Pf6N2E2_613 -1.9 -1.4 lipoprotein, putative compare
Pf6N2E2_6057 -1.9 -2.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2318 -1.9 -6.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2320 -1.9 -2.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4369 -1.8 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3252 -1.8 -5.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5258 -1.8 -5.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2371 -1.8 -1.0 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2973 -1.8 -4.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2477 -1.8 -1.8 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_2927 -1.8 -2.5 Putative signal peptide protein compare
Pf6N2E2_3303 -1.8 -3.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2310 -1.8 -7.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1652 -1.8 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2488 -1.8 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5242 -1.8 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3702 -1.7 -2.8 FIG00953907: hypothetical protein compare
Pf6N2E2_2065 -1.7 -2.6 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_2503 -1.7 -1.7 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4204 -1.7 -1.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5257 -1.7 -6.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1352 -1.7 -1.7 Cation transport ATPase compare
Pf6N2E2_3477 -1.7 -1.5 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2447 -1.7 -3.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_1056 -1.7 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_199 -1.7 -2.2 hypothetical protein compare
Pf6N2E2_3271 -1.7 -2.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2313 -1.7 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4163 -1.6 -2.5 FIG00953549: hypothetical protein compare
Pf6N2E2_3849 -1.6 -1.5 FIG00954739: hypothetical protein compare
Pf6N2E2_1932 -1.6 -4.0 Transcriptional regulator, IclR family compare
Pf6N2E2_5226 -1.6 -1.3 FIG00955589: hypothetical protein compare
Pf6N2E2_4545 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_1504 -1.6 -1.7 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_2219 -1.6 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_813 -1.6 -3.5 Response regulator compare
Pf6N2E2_1512 -1.6 -2.1 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_3454 -1.5 -2.1 hypothetical protein compare
Pf6N2E2_5337 -1.5 -3.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4579 -1.5 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_1611 -1.5 -2.9 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_5338 -1.5 -5.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5764 -1.5 -4.7 C4-dicarboxylate transporter/malic acid transport protein compare
Pf6N2E2_2264 -1.5 -2.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4416 -1.5 -1.9 Tyrosine recombinase XerC compare
Pf6N2E2_3199 -1.5 -4.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5288 -1.5 -4.4 hypothetical protein compare
Pf6N2E2_1824 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_4125 -1.4 -3.7 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake compare
Pf6N2E2_2459 -1.4 -1.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_1445 -1.4 -2.5 Glutathione S-transferase compare
Pf6N2E2_919 -1.4 -1.3 FIG00954373: hypothetical protein compare
Pf6N2E2_2126 -1.4 -4.3 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_1431 -1.4 -2.1 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_254 -1.4 -3.0 Transcriptional regulator, LysR family compare
Pf6N2E2_4206 -1.4 -1.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_819 -1.4 -2.0 Response regulator compare
Pf6N2E2_2527 -1.4 -3.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1834 -1.4 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1545 -1.4 -2.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1959 -1.4 -3.1 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_612 -1.4 -2.1 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_4352 -1.3 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_122 -1.3 -1.7 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2756 -1.3 -4.4 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3529 -1.3 -1.6 Toxin A compare
Pf6N2E2_2111 -1.3 -2.2 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_5820 -1.3 -1.6 FIG00957914: hypothetical protein compare
Pf6N2E2_84 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_1464 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_2962 -1.3 -1.1 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_704 -1.3 -2.2 Cytochrome c551/c552 compare
Pf6N2E2_5793 -1.3 -4.6 Aspartyl aminopeptidase compare
Pf6N2E2_2317 -1.3 -2.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2640 -1.3 -1.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2127 -1.3 -3.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1203 -1.3 -1.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_2325 -1.3 -3.7 Recombination protein RecR compare
Pf6N2E2_5156 -1.3 -1.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1089 -1.3 -1.8 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2124 -1.3 -1.0 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3253 -1.2 -2.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3198 -1.2 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2552 -1.2 -3.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1966 -1.2 -1.7 SAM-dependent methyltransferases compare
Pf6N2E2_5546 -1.2 -3.9 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_2285 -1.2 -0.9 FIG00954079: hypothetical protein compare
Pf6N2E2_4674 -1.2 -3.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_1092 -1.2 -2.5 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_2411 -1.2 -2.8 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Pf6N2E2_2574 -1.2 -1.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_4562 -1.2 -1.6 L-cystine uptake protein TcyP compare
Pf6N2E2_1502 -1.2 -1.1 Two-component system regulatory protein compare
Pf6N2E2_1876 -1.2 -1.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_3348 -1.2 -3.3 hypothetical protein compare
Pf6N2E2_6085 -1.2 -1.5 Aha1 domain superfamily compare
Pf6N2E2_4197 -1.2 -4.0 DNA recombination and repair protein RecF compare
Pf6N2E2_3786 -1.2 -2.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_1606 -1.2 -3.6 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_6087 -1.2 -2.1 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_136 -1.2 -1.8 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_3610 -1.2 -2.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1046 -1.2 -2.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_92 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_5500 -1.2 -2.4 MoxR-like ATPases compare
Pf6N2E2_6063 -1.2 -4.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_5780 -1.1 -4.4 Periplasmic protease compare
Pf6N2E2_3607 -1.1 -4.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4975 -1.1 -3.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_955 -1.1 -2.0 FIG00953508: hypothetical protein compare
Pf6N2E2_40 -1.1 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3505 -1.1 -1.1 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4661 -1.1 -2.0 KluA regulatory protein compare
Pf6N2E2_4467 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_1870 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_698 -1.1 -1.6 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_3009 -1.1 -1.8 Phage tail tube protein compare
Pf6N2E2_341 -1.1 -3.0 sensor histidine kinase compare
Pf6N2E2_1074 -1.1 -1.7 FIG00953356: hypothetical protein compare
Pf6N2E2_2161 -1.1 -1.9 Conserved domain protein compare
Pf6N2E2_942 -1.1 -1.3 Mll6465 protein compare
Pf6N2E2_5328 -1.1 -2.0 FIG00958649: hypothetical protein compare
Pf6N2E2_15 -1.1 -2.7 Pyoverdine biosynthesis related protein PvdP compare
Pf6N2E2_339 -1.1 -1.9 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1760 -1.1 -2.3 Oxidoreductase compare
Pf6N2E2_4615 -1.1 -1.2 type IV pili signal transduction protein PilI compare
Pf6N2E2_1034 -1.1 -1.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1438 -1.1 -2.1 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_2586 -1.1 -1.3 Hpt domain protein compare
Pf6N2E2_1584 -1.1 -1.8 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_5174 -1.0 -1.7 Glycosyltransferase compare
Pf6N2E2_5365 -1.0 -3.3 Heavy metal sensor histidine kinase compare
Pf6N2E2_5593 -1.0 -2.6 Leucyl-tRNA synthetase compare
Pf6N2E2_4476 -1.0 -3.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_5775 -1.0 -1.6 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_4388 -1.0 -5.2 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_2467 -1.0 -2.1 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_2755 -1.0 -1.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4372 -1.0 -2.7 FIG00460773: hypothetical protein compare
Pf6N2E2_1723 -1.0 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_5155 -1.0 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2861 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_1577 -1.0 -1.8 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_1484 -1.0 -2.7 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_2193 -1.0 -3.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium bromate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium bromate across organisms