Experiment set5IT063 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -4.7 -11.7 outer membrane protein TolC compare
CSW01_13420 -2.7 -3.6 elongation factor P--(R)-beta-lysine ligase compare
CSW01_01295 -2.7 -1.8 ABC transporter permease compare
CSW01_02890 -2.6 -10.7 aspartate kinase compare
CSW01_04650 -2.5 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_00450 -2.0 -2.2 SCP2 domain-containing protein compare
CSW01_08450 -2.0 -2.5 antimicrobial peptide ABC transporter permease SapB compare
CSW01_14965 -1.9 -4.3 hypothetical protein compare
CSW01_03870 -1.9 -1.3 inositol monophosphatase compare
CSW01_16310 -1.8 -2.1 DUF3709 domain-containing protein compare
CSW01_17585 -1.6 -1.7 periplasmic nitrate reductase electron transfer subunit compare
CSW01_13805 -1.4 -3.6 Hsp33 family molecular chaperone HslO compare
CSW01_11115 -1.4 -4.6 hypothetical protein compare
CSW01_01300 -1.3 -3.8 sugar ABC transporter compare
CSW01_00415 -1.3 -1.8 hypothetical protein compare
CSW01_13285 -1.3 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_18350 -1.2 -1.0 cell division protein DedD compare
CSW01_02875 -1.2 -3.5 DNA recombination/repair protein RecA compare
CSW01_05575 -1.2 -3.1 phosphate acetyltransferase compare
CSW01_05240 -1.2 -2.1 CBS domain-containing protein compare
CSW01_16470 -1.1 -2.2 DUF645 domain-containing protein compare
CSW01_09365 -1.1 -4.0 pyruvate formate lyase 1-activating protein compare
CSW01_10560 -1.1 -2.8 chorismate synthase compare
CSW01_09245 -1.1 -2.5 Holliday junction branch migration protein RuvA compare
CSW01_11535 -1.1 -4.4 thiamine-phosphate kinase compare
CSW01_09240 -1.1 -3.1 Holliday junction branch migration DNA helicase RuvB compare
CSW01_08515 -1.0 -1.9 trimethylamine N-oxide reductase system protein TorE compare
CSW01_17255 -1.0 -2.2 nucleoside diphosphate kinase regulator compare
CSW01_14130 -1.0 -1.3 hypothetical protein compare
CSW01_01875 -1.0 -3.9 hypothetical protein compare
CSW01_06585 -1.0 -1.9 fumarate hydratase compare
CSW01_01490 -1.0 -2.3 Fis family transcriptional regulator compare
CSW01_16460 -1.0 -2.1 acetyltransferase compare
CSW01_02390 -0.9 -1.6 tRNA-Thr compare
CSW01_08710 -0.9 -1.7 hypothetical protein compare
CSW01_03785 -0.9 -1.7 phosphate ABC transporter permease compare
CSW01_16285 -0.9 -1.7 acetyltransferase compare
CSW01_06825 -0.9 -1.6 acylphosphatase compare
CSW01_05275 -0.9 -1.3 hypothetical protein compare
CSW01_06300 -0.9 -2.4 DUF2750 domain-containing protein compare
CSW01_10390 -0.9 -1.6 ferrous iron transport protein A compare
CSW01_01015 -0.8 -5.8 DNA helicase II compare
CSW01_15150 -0.8 -2.2 hypothetical protein compare
CSW01_05180 -0.8 -1.3 tRNA-Asn compare
CSW01_13305 -0.8 -1.2 shikimate kinase compare
CSW01_04910 -0.8 -2.2 PhoH family protein compare
CSW01_05165 -0.8 -1.2 electron transport complex subunit RsxC compare
CSW01_12250 -0.8 -2.9 site-specific tyrosine recombinase XerD compare
CSW01_15000 -0.8 -1.7 rfbP protein compare
CSW01_19435 -0.8 -1.4 hypothetical protein compare
CSW01_18495 -0.8 -1.2 cytochrome bd-I oxidase subunit CydX compare
CSW01_00560 -0.8 -2.2 DNA polymerase I compare
CSW01_08630 -0.8 -2.6 condensin subunit F compare
CSW01_15030 -0.8 -2.2 hypothetical protein compare
CSW01_15680 -0.8 -0.7 DUF3265 domain-containing protein compare
CSW01_04465 -0.8 -2.1 hypothetical protein compare
CSW01_05140 -0.7 -1.9 lactoylglutathione lyase compare
CSW01_09970 -0.7 -3.0 peptide-methionine (R)-S-oxide reductase compare
CSW01_05545 -0.7 -2.6 peptide ABC transporter substrate-binding protein compare
CSW01_14080 -0.7 -0.8 DUF3283 domain-containing protein compare
CSW01_08540 -0.7 -3.0 NAD(P)-dependent oxidoreductase compare
CSW01_03855 -0.7 -2.5 preprotein translocase subunit YajC compare
CSW01_05480 -0.7 -1.5 hypothetical protein compare
CSW01_17885 -0.7 -1.2 hypothetical protein compare
CSW01_03975 -0.7 -2.5 exodeoxyribonuclease VII large subunit compare
CSW01_04940 -0.7 -0.5 hypothetical protein compare
CSW01_06610 -0.7 -3.1 30S ribosomal protein S5 alanine N-acetyltransferase compare
CSW01_07820 -0.7 -1.9 RidA family protein compare
CSW01_09660 -0.7 -1.8 hypothetical protein compare
CSW01_02020 -0.7 -1.5 phosphoadenosine phosphosulfate reductase compare
CSW01_17070 -0.7 -1.4 YoaH family protein compare
CSW01_12120 -0.7 -1.8 8-oxo-dGTP diphosphatase MutT compare
CSW01_09525 -0.6 -0.5 DNA translocase FtsK compare
CSW01_11230 -0.6 -2.0 chemotaxis protein methyltransferase 1 compare
CSW01_03325 -0.6 -1.4 porin compare
CSW01_18150 -0.6 -0.6 transcription initiation factor TFIIIB compare
CSW01_16835 -0.6 -3.2 catabolite repressor/activator compare
CSW01_06970 -0.6 -0.9 DUF2256 domain-containing protein compare
CSW01_16395 -0.6 -0.7 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_07460 -0.6 -0.9 ribosome modulation factor compare
CSW01_00465 -0.6 -2.1 twin-arginine translocase subunit TatB compare
CSW01_17090 -0.6 -2.4 SPOR domain-containing protein compare
CSW01_13565 -0.6 -2.2 cell division protein ZapB compare
CSW01_13300 -0.6 -2.4 3-dehydroquinate synthase compare
CSW01_19395 -0.6 -0.9 histidine kinase compare
CSW01_04715 -0.6 -2.6 serine acetyltransferase compare
CSW01_05230 -0.6 -2.1 molybdopterin synthase catalytic subunit compare
CSW01_07715 -0.6 -1.3 lipoprotein NlpC compare
CSW01_17005 -0.6 -2.6 sensor domain-containing diguanylate cyclase compare
CSW01_00650 -0.6 -2.6 tyrosine recombinase XerC compare
CSW01_15705 -0.6 -1.2 DUF3265 domain-containing protein compare
CSW01_19415 -0.6 -1.4 hypothetical protein compare
CSW01_09350 -0.6 -3.8 formate C-acetyltransferase compare
CSW01_15870 -0.6 -1.1 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_07870 -0.6 -1.8 ABC transporter ATP-binding protein compare
CSW01_18565 -0.6 -1.9 L-threonine 3-dehydrogenase compare
CSW01_16405 -0.6 -1.5 hemagglutinin compare
CSW01_16895 -0.6 -2.0 DNA-binding response regulator compare
CSW01_05195 -0.6 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_07145 -0.6 -1.8 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_10550 -0.6 -2.3 elongation factor P hydroxylase compare
CSW01_03475 -0.6 -1.5 ATP-dependent RNA helicase SrmB compare
CSW01_15005 -0.5 -2.0 HNH endonuclease compare
CSW01_01800 -0.5 -0.5 tRNA-Met compare
CSW01_12365 -0.5 -1.4 inorganic phosphate transporter compare
CSW01_00235 -0.5 -1.5 peptide deformylase compare
CSW01_10150 -0.5 -2.9 SulP family inorganic anion transporter compare
CSW01_10385 -0.5 -3.0 Fe(2+) transporter permease subunit FeoB compare
CSW01_07945 -0.5 -2.2 superoxide dismutase compare
CSW01_10440 -0.5 -1.2 succinate dehydrogenase flavoprotein subunit compare
CSW01_11915 -0.5 -2.3 hypothetical protein compare
CSW01_04585 -0.5 -2.0 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_18315 -0.5 -1.6 methyltransferase compare
CSW01_17325 -0.5 -2.2 transaldolase compare
CSW01_02450 -0.5 -3.0 pyrroline-5-carboxylate reductase compare
CSW01_17670 -0.5 -2.0 hypothetical protein compare
CSW01_09935 -0.5 -2.4 hypothetical protein compare
CSW01_09485 -0.5 -1.3 DUF1425 domain-containing protein compare
CSW01_11960 -0.5 -2.4 autonomous glycyl radical cofactor GrcA compare
CSW01_05280 -0.5 -2.2 uridine kinase compare
CSW01_06435 -0.5 -1.4 C4-dicarboxylate ABC transporter compare
CSW01_03915 -0.5 -1.1 Fe-S assembly protein IscX compare
CSW01_10135 -0.5 -1.3 hypothetical protein compare
CSW01_09390 -0.5 -3.2 SpoVR family protein compare
CSW01_17195 -0.5 -2.4 exopolyphosphatase compare
CSW01_11420 -0.5 -1.0 cytochrome C biogenesis protein CcsB compare
CSW01_06935 -0.5 -1.2 exonuclease compare
CSW01_11000 -0.5 -1.7 hypothetical protein compare
CSW01_07130 -0.5 -0.8 hypothetical protein compare
CSW01_10570 -0.5 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
CSW01_05020 -0.5 -2.0 regulatory protein ToxS compare
CSW01_01920 -0.5 -1.2 bacterioferritin compare
CSW01_05370 -0.5 -1.1 YbaB/EbfC family nucleoid-associated protein compare
CSW01_18140 -0.5 -2.0 hypothetical protein compare
CSW01_13500 -0.5 -1.8 ribonuclease E activity regulator RraA compare
CSW01_08650 -0.5 -2.9 molecular chaperone TorD compare
CSW01_05505 -0.5 -1.2 response regulator compare
CSW01_05380 -0.5 -1.4 YkgJ family cysteine cluster protein compare
CSW01_15730 -0.5 -0.6 VOC family protein compare
CSW01_15865 -0.5 -1.4 DUF3465 domain-containing protein compare
CSW01_03045 -0.5 -1.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_08445 -0.5 -1.9 ABC transporter substrate-binding protein compare
CSW01_17410 -0.5 -1.6 transporter compare
CSW01_15145 -0.5 -2.2 acetate kinase compare
CSW01_14470 -0.5 -1.8 DUF134 domain-containing protein compare
CSW01_08195 -0.5 -1.5 ABC transporter ATP-binding protein compare
CSW01_01845 -0.5 -2.5 protease modulator HflK compare
CSW01_08635 -0.5 -2.3 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
CSW01_11345 -0.5 -2.8 uracil phosphoribosyltransferase compare
CSW01_10750 -0.5 -1.5 outer membrane protein assembly factor BamC compare
CSW01_08665 -0.5 -1.2 DNA transformation protein compare
CSW01_00095 -0.5 -1.0 hypothetical protein compare
CSW01_01995 -0.5 -2.1 iron-hydroxamate ABC transporter substrate-binding protein compare
CSW01_14315 -0.5 -2.3 helix-turn-helix-type transcriptional regulator compare
CSW01_17155 -0.5 -1.8 glutathione S-transferase compare
CSW01_16570 -0.5 -1.9 N-acetyltransferase compare
CSW01_17630 -0.5 -1.4 Fe(3+) ions import ATP-binding protein FbpC compare
CSW01_00460 -0.5 -1.4 twin-arginine translocase subunit TatA compare
CSW01_11800 -0.5 -1.2 hydroxyacid dehydrogenase compare
CSW01_14100 -0.5 -1.0 hypothetical protein compare
CSW01_04595 -0.4 -1.4 DUF423 domain-containing protein compare
CSW01_00540 -0.4 -1.0 hypothetical protein compare
CSW01_02320 -0.4 -2.1 Co2+/Mg2+ efflux protein ApaG compare
CSW01_09920 -0.4 -0.8 chromosome partitioning protein ParA compare
CSW01_18280 -0.4 -1.6 L-2,4-diaminobutyric acid acetyltransferase compare
CSW01_12590 -0.4 -1.6 TetR/AcrR family transcriptional regulator compare
CSW01_05690 -0.4 -1.4 DUF1365 domain-containing protein compare
CSW01_03735 -0.4 -1.9 DUF1904 domain-containing protein compare
CSW01_00615 -0.4 -1.1 hypothetical protein compare
CSW01_18170 -0.4 -2.7 inosine/guanosine kinase compare
CSW01_03685 -0.4 -1.3 ribosomal subunit interface protein compare
CSW01_18795 -0.4 -2.3 cold-shock protein CspV compare
CSW01_16920 -0.4 -0.9 hypothetical protein compare
CSW01_08550 -0.4 -1.1 hypothetical protein compare
CSW01_11565 -0.4 -0.6 transcriptional regulator NrdR compare
CSW01_09620 -0.4 -0.6 trigger factor compare
CSW01_07160 -0.4 -1.4 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_04990 -0.4 -1.0 hypothetical protein compare
CSW01_00580 -0.4 -2.1 GTPase-activating protein compare
CSW01_11010 -0.4 -3.0 lysozyme compare
CSW01_10790 -0.4 -1.5 arsenate reductase (glutaredoxin) compare
CSW01_06410 -0.4 -1.2 hypothetical protein compare
CSW01_17215 -0.4 -1.3 multidrug transporter compare
CSW01_19460 -0.4 -1.5 PEGA domain-containing protein compare
CSW01_11945 -0.4 -1.3 cation-binding protein compare
CSW01_09635 -0.4 -1.7 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10805 -0.4 -2.8 DUF2066 domain-containing protein compare
CSW01_03330 -0.4 -0.9 transcription elongation factor GreA compare
CSW01_16735 -0.4 -0.9 DUF4160 domain-containing protein compare
CSW01_06885 -0.4 -1.1 hypothetical protein compare
CSW01_16800 -0.4 -2.4 anaerobic ribonucleoside-triphosphate reductase compare
CSW01_00955 -0.4 -2.7 hypothetical protein compare
CSW01_19175 -0.4 -1.7 hypothetical protein compare
CSW01_04460 -0.4 -3.4 lytic transglycosylase F compare
CSW01_15560 -0.4 -0.8 lipocalin compare
CSW01_00850 -0.4 -3.4 multidrug resistance protein compare
CSW01_00195 -0.4 -1.0 hypothetical protein compare
CSW01_12995 -0.4 -2.0 lysine transporter LysM compare
CSW01_13220 -0.4 -1.1 hypothetical protein compare
CSW01_05305 -0.4 -2.0 long-chain fatty acid transporter compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_anaerobic experiments

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms