Experiment set5IT063 for Pseudomonas syringae pv. syringae B728a

Compare to:

epiphytic; Lima bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.9 -2.6 anthranilate synthase, component II compare
Psyr_1984 -5.7 -3.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_0557 -5.5 -3.8 phosphoserine phosphatase compare
Psyr_3174 -5.3 -3.7 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_1663 -5.2 -3.6 phosphoribosylanthranilate isomerase compare
Psyr_1983 -5.1 -5.0 3-isopropylmalate dehydratase, large subunit compare
Psyr_4609 -4.8 -13.3 anthranilate synthase, component I compare
Psyr_1408 -4.8 -3.3 Holliday junction endonuclease RuvC compare
Psyr_0531 -4.7 -2.9 LmbE-like protein compare
Psyr_1269 -4.5 -3.1 phosphoribosylformylglycinamidine synthase compare
Psyr_0847 -4.2 -6.9 acetolactate synthase, small subunit compare
Psyr_0848 -4.1 -11.0 ketol-acid reductoisomerase compare
Psyr_3555 -4.0 -2.0 aspartate kinase compare
Psyr_4270 -3.9 -9.5 serine hydroxymethyltransferase compare
Psyr_0918 -3.9 -16.4 ABC transporter compare
Psyr_0822 -3.8 -1.4 1-phosphofructokinase compare
Psyr_4407 -3.8 -2.6 phosphoribosylamine--glycine ligase compare
Psyr_4369 -3.7 -6.6 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0474 -3.6 -9.4 homoserine O-acetyltransferase compare
Psyr_1985 -3.6 -10.5 3-isopropylmalate dehydrogenase compare
Psyr_3886 -3.6 -1.9 methionyl-tRNA synthetase compare
Psyr_1668 -3.6 -7.2 amidophosphoribosyltransferase compare
Psyr_0025 -3.6 -5.3 shikimate dehydrogenase compare
Psyr_1613 -3.6 -4.2 septum site-determining protein MinC compare
Psyr_1941 -3.5 -1.7 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_4887 -3.5 -10.0 Peptidase S41A, C-terminal protease compare
Psyr_0393 -3.4 -4.7 Protein of unknown function DUF971 compare
Psyr_0917 -3.4 -12.4 ABC-2 compare
Psyr_4684 -3.4 -2.3 biotin synthesis protein BioC compare
Psyr_0034 -3.4 -4.6 tryptophan synthase, beta chain compare
Psyr_4893 -3.3 -1.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0411 -3.3 -17.5 glutamate synthase (NADPH) large subunit compare
Psyr_2462 -3.3 -6.1 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0469 -3.3 -9.3 dihydroxyacid dehydratase compare
Psyr_1067 -3.2 -3.6 GTP cyclohydrolase subunit MoaC compare
Psyr_0826 -3.2 -8.8 glucose-6-phosphate isomerase compare
Psyr_1669 -3.2 -7.7 O-succinylhomoserine sulfhydrylase compare
Psyr_0846 -3.2 -10.2 acetolactate synthase, large subunit compare
Psyr_3202 -3.2 -2.2 NADH dehydrogenase subunit G compare
Psyr_3676 -3.1 -3.5 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_2112 -3.1 -1.7 Protein with unknown function DUF469 compare
Psyr_4115 -3.1 -2.1 phosphoheptose isomerase compare
Psyr_5132 -3.0 -3.5 Glucose-inhibited division protein A subfamily compare
Psyr_4018 -3.0 -7.4 Formyltetrahydrofolate deformylase compare
Psyr_1257 -2.9 -9.0 2-isopropylmalate synthase compare
Psyr_0377 -2.9 -9.3 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_3290 -2.9 -3.9 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_0951 -2.9 -3.3 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4512 -2.8 -7.3 putative phage-related protein compare
Psyr_2980 -2.8 -4.4 UDP-glucose pyrophosphorylase compare
Psyr_4897 -2.8 -3.2 imidazoleglycerol-phosphate dehydratase compare
Psyr_0412 -2.7 -9.9 glutamate synthase (NADPH) small subunit compare
Psyr_2077 -2.7 -4.6 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0378 -2.7 -10.0 Glycosyl transferase, family 2 compare
Psyr_0827 -2.7 -3.5 pantothenate synthetase compare
Psyr_2973 -2.7 -2.2 Glyoxalase I compare
Psyr_0473 -2.7 -5.3 Methionine biosynthesis MetW compare
Psyr_4754 -2.7 -1.4 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4852 -2.6 -6.4 D-3-phosphoglycerate dehydrogenase compare
Psyr_4894 -2.6 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4687 -2.6 -7.8 biotin synthase compare
Psyr_4580 -2.6 -3.3 anthranilate phosphoribosyltransferase compare
Psyr_4683 -2.6 -4.6 dethiobiotin synthase compare
Psyr_1528 -2.6 -2.5 Arc-like DNA binding protein compare
Psyr_1914 -2.5 -7.2 transaldolase compare
Psyr_0081 -2.5 -1.7 ABC transporter compare
Psyr_0487 -2.5 -3.7 glutathione synthase compare
Psyr_1614 -2.4 -2.8 lipid A biosynthesis acyltransferase compare
Psyr_4362 -2.4 -3.3 Rare lipoprotein A compare
Psyr_0704 -2.3 -5.1 glutamate 5-kinase compare
Psyr_0838 -2.3 -2.3 Rieske [2Fe-2S] region compare
Psyr_0454 -2.3 -5.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_3620 -2.3 -1.3 hypothetical protein compare
Psyr_3374 -2.3 -3.5 Heavy metal response regulator compare
Psyr_5072 -2.3 -1.2 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0947 -2.3 -6.0 TPR repeat protein:TPR repeat protein compare
Psyr_3358 -2.2 -2.8 transmembrane pair compare
Psyr_3246 -2.2 -2.1 Ku compare
Psyr_1642 -2.2 -3.3 Maf-like protein compare
Psyr_2292 -2.1 -2.2 L-glutaminase compare
Psyr_3433 -2.1 -3.3 Protein-glutamate methylesterase compare
Psyr_4896 -2.1 -5.4 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4050 -2.1 -2.4 Protein of unknown function DUF479 compare
Psyr_4141 -2.1 -5.6 ABC transporter compare
Psyr_0033 -2.1 -3.4 tryptophan synthase, alpha chain compare
Psyr_4126 -2.1 -8.1 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_0954 -2.1 -2.1 Protein of unknown function UPF0153 compare
Psyr_1109 -2.1 -5.4 6-phosphogluconate dehydratase compare
Psyr_3008 -2.1 -4.5 Undecaprenyl-diphosphatase compare
Psyr_4091 -2.1 -4.7 8-oxo-dGTPase compare
Psyr_3739 -2.0 -2.2 conserved hypothetical protein compare
Psyr_1373 -2.0 -2.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4140 -2.0 -2.2 Protein of unknown function DUF140 compare
Psyr_5029 -2.0 -2.4 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_4057 -2.0 -2.7 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_3133 -2.0 -2.1 Amidohydrolase 2 compare
Psyr_4686 -1.9 -3.8 8-amino-7-oxononanoate synthase compare
Psyr_1410 -1.9 -4.2 Holliday junction DNA helicase RuvB compare
Psyr_2520 -1.9 -1.7 SOS-response transcriptional repressor, LexA compare
Psyr_3288 -1.9 -2.7 conserved hypothetical protein compare
Psyr_4454 -1.9 -2.3 HupE/UreJ protein compare
Psyr_3028 -1.8 -1.5 Protein of unknown function DUF28 compare
Psyr_4844 -1.8 -6.0 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_1140 -1.8 -3.0 Disulfide bond formation protein DsbB compare
Psyr_0529 -1.8 -3.7 Glycosyl transferase, group 1 compare
Psyr_2767 -1.8 -3.0 Glycoside hydrolase, family 19 compare
Psyr_4622 -1.8 -3.6 Nucleotidyl transferase compare
Psyr_4128 -1.8 -5.2 sulfate adenylyltransferase subunit 2 compare
Psyr_1910 -1.8 -4.4 VacJ-like lipoprotein compare
Psyr_4133 -1.8 -7.0 histidinol dehydrogenase compare
Psyr_4089 -1.7 -4.6 PAS compare
Psyr_1152 -1.7 -2.4 transcriptional regulator, ArsR family compare
Psyr_4194 -1.7 -3.6 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0832 -1.7 -6.6 Two-component sensor kinase CbrA compare
Psyr_4408 -1.7 -6.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4134 -1.7 -5.6 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0386 -1.7 -3.3 phosphoribosyl-AMP cyclohydrolase compare
Psyr_4658 -1.7 -2.4 CDS compare
Psyr_1885 -1.7 -1.6 hypothetical protein compare
Psyr_3427 -1.7 -2.5 conserved hypothetical protein compare
Psyr_1317 -1.7 -1.5 conserved hypothetical protein compare
Psyr_1633 -1.6 -1.2 MotA/TolQ/ExbB proton channel compare
Psyr_1120 -1.6 -4.3 glucose-6-phosphate 1-dehydrogenase compare
Psyr_2471 -1.6 -2.2 hydroxymethylglutaryl-CoA lyase compare
Psyr_1033 -1.6 -2.2 YebG compare
Psyr_3262 -1.6 -1.7 dnaK suppressor protein, putative compare
Psyr_2223 -1.6 -1.4 sarcosine oxidase, delta subunit compare
Psyr_2264 -1.6 -1.2 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4920 -1.6 -1.2 conserved hypothetical bacteriophage protein compare
Psyr_1121 -1.6 -1.3 6-phosphogluconolactonase compare
Psyr_3135 -1.6 -1.3 transcriptional regulator, GntR family compare
Psyr_1859 -1.6 -2.5 conserved hypothetical protein compare
Psyr_3795 -1.6 -1.5 hypothetical protein compare
Psyr_0437 -1.6 -1.6 acyl carrier protein, putative compare
Psyr_4579 -1.6 -4.0 indole-3-glycerol phosphate synthase compare
Psyr_1108 -1.6 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_4132 -1.6 -4.6 histidinol phosphate aminotransferase apoenzyme compare
Psyr_3142 -1.5 -1.6 general secretion pathway protein N, putative compare
Psyr_1616 -1.5 -2.0 Rieske [2Fe-2S] region compare
Psyr_4740 -1.5 -4.2 thiazole-phosphate synthase compare
Psyr_4203 -1.5 -1.6 SsrA-binding protein compare
Psyr_4350 -1.5 -2.1 Protein of unknown function DUF218 compare
Psyr_1544 -1.5 -2.4 SirA-like protein compare
Psyr_1791 -1.5 -2.2 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_4416 -1.5 -2.7 precorrin-8X methylmutase compare
Psyr_3419 -1.5 -4.0 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_4991 -1.5 -1.7 hypothetical protein compare
Psyr_4898 -1.5 -4.9 aromatic amino acid aminotransferase apoenzyme compare
Psyr_2852 -1.5 -2.6 conserved hypothetical protein compare
Psyr_3337 -1.5 -1.5 gluconate kinase, SKI family compare
Psyr_0014 -1.4 -2.7 lipid A biosynthesis acyltransferase compare
Psyr_3583 -1.4 -1.9 condensin subunit ScpB compare
Psyr_2820 -1.4 -1.4 RecT protein compare
Psyr_3115 -1.4 -2.4 Glycerate kinase compare
Psyr_2497 -1.4 -1.8 lipoprotein, putative compare
Psyr_0099 -1.4 -1.9 Conserved hypothetical protein compare
Psyr_3286 -1.4 -4.3 conserved hypothetical protein compare
Psyr_5130 -1.4 -4.2 chromosome segregation ATPase compare
Psyr_3315 -1.4 -0.9 conserved hypothetical protein compare
Psyr_4341 -1.4 -4.2 thiamine-phosphate diphosphorylase compare
Psyr_0201 -1.4 -3.7 ATP-dependent DNA helicase RecG compare
Psyr_2738 -1.4 -2.2 regulatory protein, LysR compare
Psyr_3484 -1.4 -2.0 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_4845 -1.4 -0.8 conserved hypothetical protein compare
Psyr_0248 -1.4 -1.7 conserved hypothetical protein compare
Psyr_0919 -1.3 -5.7 Chromosome segregation ATPase-like protein compare
Psyr_4966 -1.3 -3.5 ImpA, N-terminal compare
Psyr_2540 -1.3 -1.2 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_1998 -1.3 -2.4 lipoprotein, putative compare
Psyr_0528 -1.3 -1.8 Carbamoyltransferase compare
Psyr_1717 -1.3 -1.6 TPR repeat:von Willebrand factor, type A compare
Psyr_1212 -1.3 -1.9 type III secretion protein HrpO compare
Psyr_2067 -1.3 -1.3 ABC transporter compare
Psyr_1650 -1.3 -1.4 aminodeoxychorismate lyase apoprotein compare
Psyr_3664 -1.3 -2.3 DTW compare
Psyr_0833 -1.3 -2.5 conserved hypothetical protein compare
Psyr_3450 -1.3 -2.7 Hpt compare
Psyr_1749 -1.3 -3.7 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_0426 -1.3 -1.1 lipoprotein, putative compare
Psyr_3627 -1.3 -1.5 OsmC-like protein compare
Psyr_1418 -1.3 -2.0 Radical SAM compare
Psyr_1247 -1.2 -1.8 conserved hypothetical protein compare
Psyr_2461 -1.2 -1.3 Uncharacterized conserved protein UCP030820 compare
Psyr_4277 -1.2 -2.9 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_4577 -1.2 -2.0 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_3684 -1.2 -1.3 NLP/P60 compare
Psyr_1733 -1.2 -1.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_0835 -1.2 -3.4 transcriptional regulator, TraR/DksA family compare
Psyr_0914 -1.2 -5.3 Glycosyl transferase, group 1 compare
Psyr_1401 -1.2 -2.7 Histidine triad (HIT) protein compare
Psyr_1350 -1.2 -2.5 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0936 -1.2 -6.0 Glycosyl transferase, group 1 compare
Psyr_1588 -1.2 -1.6 Putative exonuclease, RdgC compare
Psyr_3862 -1.2 -1.5 conserved hypothetical protein compare
Psyr_0208 -1.2 -2.6 endoribonuclease L-PSP compare
Psyr_0532 -1.2 -2.6 conserved hypothetical protein compare
Psyr_0202 -1.2 -4.3 transcriptional regulator, LysR family compare
Psyr_2285 -1.2 -1.5 Twin-arginine translocation pathway signal compare
Psyr_2327 -1.2 -1.7 GTP cyclohydrolase subunit MoaA compare
Psyr_0916 -1.2 -4.9 GDP-mannose 4,6-dehydratase compare


Specific Phenotypes

For 1 genes in this experiment