Experiment set5IT063 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

methyl 3-keto-a-D-glucopyranoside carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23145 +4.9 25.1 hypothetical protein compare
CA265_RS23510 +3.2 8.6 energy transducer TonB compare
CA265_RS01975 +2.8 10.3 cell division protein compare
CA265_RS10740 +2.6 18.0 DNA-binding response regulator compare
CA265_RS10745 +2.5 20.2 diguanylate cyclase compare
CA265_RS04330 +2.5 9.9 transcriptional regulator compare
CA265_RS08905 +2.3 10.7 DNA helicase RecQ compare
CA265_RS21060 +2.2 6.1 hypothetical protein compare
CA265_RS23515 +2.2 7.8 hypothetical protein compare
CA265_RS15340 +2.2 2.9 periplasmic glucoside 3-dehydrogenase (lacC subunit) (EC 1.1.99.13) (from data) compare
CA265_RS16005 +2.2 9.1 hypothetical protein compare
CA265_RS18235 +2.1 7.8 peptidase compare
CA265_RS15200 +2.1 7.1 hypothetical protein compare
CA265_RS19940 +1.9 14.2 hypothetical protein compare
CA265_RS23525 +1.8 12.1 hypothetical protein compare
CA265_RS02765 +1.8 5.0 cell division protein ZapA compare
CA265_RS02760 +1.8 3.2 hypothetical protein compare
CA265_RS08895 +1.7 11.7 mannose-1-phosphate guanylyltransferase compare
CA265_RS03475 +1.7 13.8 glutamate dehydrogenase compare
CA265_RS00665 +1.6 4.2 lysine transporter LysE compare
CA265_RS17455 +1.6 5.4 hypothetical protein compare
CA265_RS18125 +1.6 9.7 gliding motility protein GldL compare
CA265_RS01960 +1.6 2.0 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS19945 +1.6 5.9 hypothetical protein compare
CA265_RS18120 +1.5 11.9 gliding motility protein GldM compare
CA265_RS15195 +1.5 7.0 hypothetical protein compare
CA265_RS09020 +1.5 8.1 hypothetical protein compare
CA265_RS23520 +1.5 8.5 phosphate ABC transporter substrate-binding protein compare
CA265_RS18755 +1.5 5.6 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
CA265_RS09140 +1.4 7.1 MerR family transcriptional regulator compare
CA265_RS15085 +1.4 9.0 hypothetical protein compare
CA265_RS23635 +1.3 10.6 gliding motility lipoprotein GldJ compare
CA265_RS18130 +1.3 9.9 gliding motility-associated lipoprotein compare
CA265_RS23030 +1.3 2.8 serine protease compare
CA265_RS24355 +1.3 5.9 transcriptional regulator compare
CA265_RS17720 +1.2 10.2 hypothetical protein compare
CA265_RS18090 +1.2 10.2 gliding motility protein compare
CA265_RS22450 +1.2 5.4 GntR family transcriptional regulator compare
CA265_RS23305 +1.2 2.1 hypothetical protein compare
CA265_RS12890 +1.2 9.1 hypothetical protein compare
CA265_RS18115 +1.2 8.1 gliding motility protein GldN compare
CA265_RS03295 +1.2 7.9 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS21000 +1.2 6.4 ribosome silencing factor compare
CA265_RS15115 +1.2 7.4 porin compare
CA265_RS00270 +1.1 2.4 hypothetical protein compare
CA265_RS21715 +1.1 6.7 hypothetical protein compare
CA265_RS07735 +1.1 2.0 transcriptional regulator compare
CA265_RS20355 +1.1 4.8 hypothetical protein compare
CA265_RS06585 +1.1 6.6 hypothetical protein compare
CA265_RS19640 +1.1 3.4 hypothetical protein compare
CA265_RS21745 +1.1 3.1 hypothetical protein compare
CA265_RS09740 +1.1 1.3 transcriptional regulator compare
CA265_RS04145 +1.1 8.0 glucose-1-phosphate adenylyltransferase compare
CA265_RS23985 +1.1 6.7 gliding motility lipoprotein GldB compare
CA265_RS04140 +1.1 7.8 glycogen synthase compare
CA265_RS12665 +1.1 2.3 cold-shock protein compare
CA265_RS07865 +1.0 6.5 aquaporin compare
CA265_RS02200 +1.0 6.7 NUDIX hydrolase compare
CA265_RS21435 +1.0 3.7 hypothetical protein compare
CA265_RS19140 +1.0 2.2 tRNA-Ile compare
CA265_RS17710 +1.0 6.7 hypothetical protein compare
CA265_RS17680 +1.0 4.0 hypothetical protein compare
CA265_RS13695 +1.0 5.3 hypothetical protein compare
CA265_RS22010 +1.0 2.0 hypothetical protein compare
CA265_RS00570 +0.9 5.9 hypothetical protein compare
CA265_RS15070 +0.9 2.8 hypothetical protein compare
CA265_RS02145 +0.9 7.2 1,4-alpha-glucan branching enzyme compare
CA265_RS21370 +0.9 5.3 peroxiredoxin compare
CA265_RS19030 +0.9 4.3 hypothetical protein compare
CA265_RS17685 +0.9 4.4 hypothetical protein compare
CA265_RS25030 +0.9 2.9 hypothetical protein compare
CA265_RS09415 +0.9 1.8 hypothetical protein compare
CA265_RS20640 +0.9 5.3 hypothetical protein compare
CA265_RS17705 +0.9 6.3 hypothetical protein compare
CA265_RS20350 +0.9 4.1 gliding motility lipoprotein GldH compare
CA265_RS19380 +0.9 6.0 beta-carotene 15,15'-monooxygenase compare
CA265_RS18990 +0.9 8.0 cell surface protein SprA compare
CA265_RS24040 +0.9 2.6 seryl-tRNA synthetase compare
CA265_RS04155 +0.9 6.8 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase compare
CA265_RS06595 +0.9 1.6 Arc family DNA binding domain-containing protein compare
CA265_RS19465 +0.9 3.5 protein tyrosine phosphatase compare
CA265_RS19910 +0.9 3.7 GDSL family lipase compare
CA265_RS21900 +0.9 7.3 two-component sensor histidine kinase compare
CA265_RS17290 +0.9 1.0 tRNA-Lys compare
CA265_RS17885 +0.9 3.8 CopY family transcriptional repressor compare
CA265_RS00490 +0.8 2.7 hypothetical protein compare
CA265_RS06115 +0.8 5.5 DNA mismatch repair protein MutT compare
CA265_RS04290 +0.8 1.9 hypothetical protein compare
CA265_RS23480 +0.8 2.6 hypothetical protein compare
CA265_RS22460 +0.8 3.1 ABC transporter ATP-binding protein compare
CA265_RS07380 +0.8 6.8 energy transducer TonB compare
CA265_RS21905 +0.8 3.8 hypothetical protein compare
CA265_RS10040 +0.8 2.6 hypothetical protein compare
CA265_RS23905 +0.8 4.6 hypothetical protein compare
CA265_RS03290 +0.8 4.2 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS18145 +0.8 2.7 hypothetical protein compare
CA265_RS04335 +0.8 3.7 hypothetical protein compare
CA265_RS23140 +0.8 1.8 hypothetical protein compare
CA265_RS03260 +0.8 5.5 multidrug ABC transporter ATP-binding protein compare
CA265_RS01100 +0.8 5.1 transcriptional regulator compare
CA265_RS21080 +0.8 2.4 hypothetical protein compare
CA265_RS17390 +0.8 3.6 PadR family transcriptional regulator compare
CA265_RS03255 +0.8 4.4 glycerophosphodiester phosphodiesterase compare
CA265_RS18140 +0.7 4.0 DUF4271 domain-containing protein compare
CA265_RS24815 +0.7 2.4 hypothetical protein compare
CA265_RS22455 +0.7 3.0 hypothetical protein compare
CA265_RS22980 +0.7 1.1 hypothetical protein compare
CA265_RS23630 +0.7 3.7 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
CA265_RS20990 +0.7 1.3 sugar transporter compare
CA265_RS17555 +0.7 5.1 hypothetical protein compare
CA265_RS10600 +0.7 3.2 RNA polymerase subunit sigma-24 compare
CA265_RS24995 +0.7 4.1 hypothetical protein compare
CA265_RS14845 +0.7 4.4 transcriptional regulator compare
CA265_RS12595 +0.7 2.7 RNA polymerase subunit sigma-24 compare
CA265_RS15330 +0.7 1.7 YebC/PmpR family DNA-binding transcriptional regulator compare
CA265_RS04325 +0.7 1.6 hypothetical protein compare
CA265_RS00165 +0.7 2.9 hypothetical protein compare
CA265_RS02840 +0.7 3.1 30S ribosomal protein S30 compare
CA265_RS24115 +0.7 3.2 hypothetical protein compare
CA265_RS14530 +0.7 1.2 nicotinate-nucleotide diphosphorylase (carboxylating) compare
CA265_RS24790 +0.7 4.5 peptidylprolyl isomerase compare
CA265_RS06885 +0.7 0.9 hypothetical protein compare
CA265_RS21115 +0.7 3.3 hypothetical protein compare
CA265_RS21185 +0.7 2.7 L-aspartate oxidase compare
CA265_RS24840 +0.6 3.7 hypothetical protein compare
CA265_RS24230 +0.6 4.1 RNA polymerase sigma factor compare
CA265_RS19190 +0.6 3.9 transferase compare
CA265_RS00925 +0.6 2.1 hypothetical protein compare
CA265_RS16470 +0.6 4.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS18555 +0.6 1.7 hypothetical protein compare
CA265_RS19795 +0.6 5.2 TonB-dependent receptor compare
CA265_RS19540 +0.6 4.3 tail-specific protease compare
CA265_RS04175 +0.6 2.9 phosphonate ABC transporter ATP-binding protein compare
CA265_RS06180 +0.6 2.9 hypothetical protein compare
CA265_RS23675 +0.6 1.6 hypothetical protein compare
CA265_RS24780 +0.6 2.0 nucleoside-diphosphate kinase compare
CA265_RS19800 +0.6 3.1 GLPGLI family protein compare
CA265_RS18260 +0.6 0.8 hypothetical protein compare
CA265_RS19405 +0.6 2.3 transcriptional regulator compare
CA265_RS23755 +0.6 3.6 lauroyl acyltransferase compare
CA265_RS21840 +0.6 2.0 phosphohydrolase compare
CA265_RS16295 +0.6 3.8 LacI family transcriptional regulator compare
CA265_RS15035 +0.6 2.3 prevent-host-death protein compare
CA265_RS06775 +0.6 3.2 competence protein TfoX compare
CA265_RS17715 +0.6 5.5 hypothetical protein compare
CA265_RS00400 +0.6 3.8 hypothetical protein compare
CA265_RS23505 +0.6 1.3 biopolymer transporter ExbD compare
CA265_RS24370 +0.6 2.8 hypothetical protein compare
CA265_RS00045 +0.6 3.1 CoA-binding protein compare
CA265_RS08880 +0.6 3.8 chromate transporter compare
CA265_RS19740 +0.6 2.2 gliding motility lipoprotein GldD compare
CA265_RS00655 +0.6 3.1 RNA polymerase subunit sigma-24 compare
CA265_RS03145 +0.6 3.6 fumarylacetoacetate hydrolase compare
CA265_RS18745 +0.6 0.8 hypothetical protein compare
CA265_RS25340 +0.6 3.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
CA265_RS21360 +0.6 1.2 hypothetical protein compare
CA265_RS23190 +0.6 1.3 transcription elongation factor GreA compare
CA265_RS21645 +0.6 3.0 response regulator compare
CA265_RS01260 +0.6 1.0 hypothetical protein compare
CA265_RS09320 +0.6 1.2 hypothetical protein compare
CA265_RS05060 +0.6 2.1 hypothetical protein compare
CA265_RS19645 +0.6 2.6 GNAT family N-acetyltransferase compare
CA265_RS08445 +0.5 1.0 endonuclease compare
CA265_RS16945 +0.5 1.5 hypothetical protein compare
CA265_RS00335 +0.5 1.0 hypothetical protein compare
CA265_RS06405 +0.5 1.9 hypothetical protein compare
CA265_RS13205 +0.5 3.2 zinc/iron permease compare
CA265_RS22750 +0.5 1.5 hypothetical protein compare
CA265_RS21255 +0.5 4.1 hypothetical protein compare
CA265_RS09335 +0.5 3.6 DUF4442 domain-containing protein compare
CA265_RS18790 +0.5 2.9 four helix bundle protein compare
CA265_RS18945 +0.5 3.1 LacI family transcriptional regulator compare
CA265_RS22180 +0.5 3.0 hypothetical protein compare
CA265_RS15400 +0.5 2.3 CDP-alcohol phosphatidyltransferase compare
CA265_RS22800 +0.5 3.4 glycosyl transferase compare
CA265_RS23120 +0.5 1.6 hypothetical protein compare
CA265_RS03745 +0.5 2.3 hypothetical protein compare
CA265_RS06870 +0.5 4.0 efflux transporter periplasmic adaptor subunit compare
CA265_RS21760 +0.5 1.7 hypothetical protein compare
CA265_RS16385 +0.5 3.9 transporter compare
CA265_RS04010 +0.5 3.7 hypothetical protein compare
CA265_RS22210 +0.5 2.4 hypothetical protein compare
CA265_RS13225 +0.5 3.7 exonuclease compare
CA265_RS00125 +0.5 2.4 polysaccharide deacetylase compare
CA265_RS17865 +0.5 2.4 hypothetical protein compare
CA265_RS11090 +0.5 3.8 hypothetical protein compare
CA265_RS09080 +0.5 1.6 thioredoxin compare
CA265_RS17060 +0.5 3.5 adenylyl-sulfate kinase compare
CA265_RS00025 +0.5 1.5 hypothetical protein compare
CA265_RS04990 +0.5 1.3 short chain dehydrogenase compare
CA265_RS16940 +0.5 2.4 plasmid stabilization system protein compare
CA265_RS24650 +0.5 2.5 beta-phosphoglucomutase compare
CA265_RS00880 +0.5 1.0 hypothetical protein compare
CA265_RS22050 +0.5 2.2 hypothetical protein compare
CA265_RS13970 +0.5 3.9 hypothetical protein compare
CA265_RS11800 +0.5 3.0 hypothetical protein compare
CA265_RS21130 +0.5 2.8 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS16785 +0.5 0.7 50S ribosomal protein L17 compare
CA265_RS09425 +0.5 1.2 hypothetical protein compare
CA265_RS01205 +0.5 2.4 import component protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source methyl 3-keto-a-D-glucopyranoside in Pedobacter sp. GW460-11-11-14-LB5

For carbon source methyl 3-keto-a-D-glucopyranoside across organisms