Experiment set5IT063 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -4.4 -2.0 NAD-dependent epimerase compare
IAI47_07040 -3.9 -3.8 acyltransferase compare
IAI47_05195 -3.7 -2.5 DnaA inactivator Hda compare
IAI47_07350 -3.7 -1.0 hypothetical protein compare
IAI47_17900 -3.7 -1.6 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_18145 -3.5 -2.4 elongation factor Tu compare
IAI47_09400 -3.4 -4.0 envelope stress response membrane protein PspB compare
IAI47_10825 -3.4 -1.5 tRNA-Val compare
IAI47_15600 -3.4 -2.3 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_05420 -3.3 -1.5 PTS glucose transporter subunit IIA compare
IAI47_08440 -3.3 -1.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_09580 -3.1 -3.8 FNR family transcription factor compare
IAI47_05070 -3.0 -0.8 outer membrane protein assembly factor BamB compare
IAI47_04300 -2.9 -5.6 recombinase RecA compare
IAI47_16430 -2.8 -3.5 histidine phosphatase family protein compare
IAI47_00760 -2.7 -4.0 envelope stress response regulator transcription factor CpxR compare
IAI47_00870 -2.6 -1.0 50S ribosomal protein L31 compare
IAI47_00780 -2.5 -4.1 6-phosphofructokinase compare
IAI47_02350 -2.5 -1.1 tRNA-Thr compare
IAI47_04870 -2.4 -6.5 elongation factor 4 compare
IAI47_08445 -2.4 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_17020 -2.4 -2.3 30S ribosome-binding factor RbfA compare
IAI47_09420 -2.3 -7.5 TIGR01620 family protein compare
IAI47_18830 -2.3 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_14295 -2.2 -2.7 hypothetical protein compare
IAI47_06325 -2.2 -5.9 acetate kinase compare
IAI47_02090 -2.1 -4.2 elongation factor Tu compare
IAI47_12885 -2.1 -7.5 pyruvate formate lyase 1-activating protein compare
IAI47_15970 -2.1 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_02380 -2.1 -1.8 DNA-binding transcriptional regulator Fis compare
IAI47_11760 -2.1 -1.2 TonB-dependent siderophore receptor compare
IAI47_09415 -2.0 -8.4 YcjX family protein compare
IAI47_12880 -2.0 -11.7 formate C-acetyltransferase compare
IAI47_08105 -1.9 -2.1 DinI family protein compare
IAI47_10840 -1.8 -3.0 pyruvate kinase PykF compare
IAI47_01820 -1.8 -5.8 two-component system response regulator OmpR compare
IAI47_09055 -1.8 -8.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_03375 -1.8 -8.3 peptide chain release factor 3 compare
IAI47_08085 -1.8 -4.4 helix-turn-helix domain-containing protein compare
IAI47_14805 -1.7 -5.5 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_00430 -1.7 -8.8 DNA polymerase I compare
IAI47_06320 -1.6 -5.9 phosphate acetyltransferase compare
IAI47_15595 -1.6 -1.6 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_11540 -1.6 -2.1 type VI secretion system tip protein VgrG compare
IAI47_01825 -1.6 -7.1 two-component system sensor histidine kinase EnvZ compare
IAI47_10925 -1.6 -2.6 EAL domain-containing protein compare
IAI47_17185 -1.6 -5.6 RNA polymerase factor sigma-54 compare
IAI47_04835 -1.6 -6.7 ATP-dependent RNA helicase SrmB compare
IAI47_07490 -1.6 -2.0 DNA-binding protein compare
IAI47_03820 -1.6 -2.8 site-specific tyrosine recombinase XerD compare
IAI47_11475 -1.6 -1.0 hypothetical protein compare
IAI47_06655 -1.5 -3.2 1-phosphofructokinase compare
IAI47_07015 -1.5 -3.8 ABC transporter ATP-binding protein compare
IAI47_18840 -1.5 -2.4 membrane protein insertion efficiency factor YidD compare
IAI47_19750 -1.5 -1.9 GNAT family N-acetyltransferase compare
IAI47_10600 -1.4 -2.3 hypothetical protein compare
IAI47_06475 -1.4 -4.3 transcriptional regulator RcsB compare
IAI47_17005 -1.4 -5.5 polyribonucleotide nucleotidyltransferase compare
IAI47_21015 -1.4 -2.6 helix-turn-helix transcriptional regulator compare
IAI47_01120 -1.4 -5.3 manganese efflux pump MntP compare
IAI47_21880 -1.4 -0.7 ParA family protein compare
IAI47_14920 -1.4 -3.9 pyrimidine/purine nucleoside phosphorylase compare
IAI47_12720 -1.4 -4.0 NADPH-dependent FMN reductase compare
IAI47_09240 -1.3 -0.9 HTH-type transcriptional regulator CysB compare
IAI47_13840 -1.3 -2.9 replication initiation negative regulator SeqA compare
IAI47_07020 -1.3 -1.2 hypothetical protein compare
IAI47_09635 -1.3 -3.1 hypothetical protein compare
IAI47_07165 -1.3 -1.4 exodeoxyribonuclease I compare
IAI47_21665 -1.3 -1.8 DUF333 domain-containing protein compare
IAI47_11360 -1.3 -1.8 hypothetical protein compare
IAI47_09360 -1.3 -0.9 peptide ABC transporter ATP-binding protein SapF compare
IAI47_15415 -1.3 -3.4 aminoacyl-tRNA hydrolase compare
IAI47_04400 -1.3 -3.6 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_07360 -1.3 -2.0 hypothetical protein compare
IAI47_11605 -1.2 -2.2 hypothetical protein compare
IAI47_01545 -1.2 -2.4 cell division ATP-binding protein FtsE compare
IAI47_08910 -1.2 -2.7 DUF1480 family protein compare
IAI47_18715 -1.2 -1.1 YibL family ribosome-associated protein compare
IAI47_08625 -1.2 -3.1 hypothetical protein compare
IAI47_02455 -1.2 -5.7 ribonuclease G compare
IAI47_13195 -1.2 -4.9 DNA starvation/stationary phase protection protein Dps compare
IAI47_03235 -1.2 -3.7 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_15110 -1.1 -2.9 chromophore lyase compare
IAI47_07965 -1.1 -3.1 transcriptional regulator RcsA compare
IAI47_10505 -1.1 -3.7 glutathione transferase GstA compare
IAI47_06565 -1.1 -1.1 YejL family protein compare
IAI47_13050 -1.1 -2.6 YbjN domain-containing protein compare
IAI47_11450 -1.1 -3.0 ankyrin repeat domain-containing protein compare
IAI47_10290 -1.1 -2.6 barstar family protein compare
IAI47_10100 -1.1 -1.6 ABC transporter ATP-binding protein compare
IAI47_08065 -1.1 -3.5 acyltransferase compare
IAI47_04505 -1.1 -4.6 transcriptional repressor MprA compare
IAI47_18240 -1.1 -2.4 NAD(P)H-flavin reductase compare
IAI47_00735 -1.1 -1.6 protein-export chaperone SecB compare
IAI47_17255 -1.1 -1.4 DUF1043 family protein compare
IAI47_02990 -1.1 -4.6 hypothetical protein compare
IAI47_01365 -1.1 -1.0 inorganic phosphate transporter PitA compare
IAI47_17235 -1.1 -5.0 stringent starvation protein A compare
IAI47_17415 -1.1 -4.2 DUF3304 domain-containing protein compare
IAI47_05155 -1.1 -6.7 polyphosphate kinase 1 compare
IAI47_19850 -1.0 -2.0 hypothetical protein compare
IAI47_01475 -1.0 -4.6 MurR/RpiR family transcriptional regulator compare
IAI47_09390 -1.0 -3.5 phage shock protein operon transcriptional activator compare
IAI47_00875 -1.0 -0.9 met regulon transcriptional regulator MetJ compare
IAI47_15895 -1.0 -1.3 secA regulator SecM compare
IAI47_07180 -1.0 -3.3 DUF496 family protein compare
IAI47_17385 -1.0 -1.6 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_17580 -1.0 -4.6 hypothetical protein compare
IAI47_09100 -1.0 -4.6 cardiolipin synthase compare
IAI47_07530 -1.0 -3.1 type III restriction-modification system endonuclease compare
IAI47_12875 -1.0 -3.4 formate transporter FocA compare
IAI47_03135 -1.0 -3.1 outer membrane channel protein TolC compare
IAI47_07775 -1.0 -1.9 phosphonate C-P lyase system protein PhnK compare
IAI47_19825 -1.0 -3.6 EAL domain-containing protein compare
IAI47_02585 -0.9 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_12985 -0.9 -1.7 heavy metal-binding domain-containing protein compare
IAI47_05445 -0.9 -4.4 sulfate transporter CysZ compare
IAI47_00655 -0.9 -1.8 glycosyltransferase family 4 protein compare
IAI47_17200 -0.9 -4.7 RNase adapter RapZ compare
IAI47_03740 -0.9 -3.2 cell division protein ZapA compare
IAI47_08850 -0.9 -2.2 septum site-determining protein MinD compare
IAI47_03240 -0.9 -2.2 TonB system transport protein ExbD compare
IAI47_05035 -0.9 -1.8 nucleoside-diphosphate kinase compare
IAI47_14075 -0.9 -1.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_09855 -0.9 -1.7 DUF2384 domain-containing protein compare
IAI47_08050 -0.9 -3.5 hypothetical protein compare
IAI47_10535 -0.9 -2.3 YgdI/YgdR family lipoprotein compare
IAI47_02040 -0.9 -3.6 peptidylprolyl isomerase compare
IAI47_03170 -0.9 -3.5 antibiotic biosynthesis monooxygenase compare
IAI47_07080 -0.9 -3.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_11625 -0.9 -1.3 DUF1311 domain-containing protein compare
IAI47_06750 -0.9 -4.4 outer membrane permeability protein SanA compare
IAI47_14630 -0.9 -2.4 helix-hairpin-helix domain-containing protein compare
IAI47_19935 -0.9 -2.2 hypothetical protein compare
IAI47_15980 -0.9 -4.5 catabolite repressor/activator compare
IAI47_18480 -0.9 -4.2 lipid III flippase WzxE compare
IAI47_12370 -0.9 -1.4 acyl carrier protein compare
IAI47_16825 -0.9 -3.4 ribonuclease E inhibitor RraB compare
IAI47_07055 -0.9 -1.8 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_05660 -0.9 -3.1 serine protease compare
IAI47_04425 -0.9 -4.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_09260 -0.9 -2.4 phosphatidylglycerophosphatase B compare
IAI47_01530 -0.9 -4.0 DUF1145 family protein compare
IAI47_13180 -0.9 -2.4 manganese-binding transcriptional regulator MntR compare
IAI47_08090 -0.9 -1.8 hypothetical protein compare
IAI47_17910 -0.9 -1.2 chorismate lyase compare
IAI47_09630 -0.9 -2.1 type VI secretion system tube protein Hcp compare
IAI47_04775 -0.8 -1.3 SIR2 family protein compare
IAI47_15810 -0.8 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_07475 -0.8 -0.5 hypothetical protein compare
IAI47_09265 -0.8 -1.3 LapA family protein compare
IAI47_05170 -0.8 -3.4 phosphate ABC transporter ATP-binding protein compare
IAI47_09955 -0.8 -1.1 SDR family oxidoreductase compare
IAI47_15260 -0.8 -2.8 amino acid ABC transporter permease compare
IAI47_16990 -0.8 -2.1 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_01135 -0.8 -0.5 hypothetical protein compare
IAI47_18495 -0.8 -2.7 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_01535 -0.8 -3.1 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_17165 -0.8 -4.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_14495 -0.8 -1.9 hypothetical protein compare
IAI47_07390 -0.8 -1.9 creatininase family protein compare
IAI47_07755 -0.8 -3.0 phosphonate C-P lyase system protein PhnG compare
IAI47_08055 -0.8 -2.1 lysis protein compare
IAI47_00300 -0.8 -0.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_08305 -0.8 -2.2 chemotaxis protein CheW compare
IAI47_03615 -0.8 -3.3 glutathione synthase compare
IAI47_21670 -0.8 -2.9 LuxR family transcriptional regulator compare
IAI47_16190 -0.8 -2.2 molybdopterin adenylyltransferase compare
IAI47_09895 -0.8 -2.0 GNAT family N-acetyltransferase compare
IAI47_04105 -0.8 -3.0 glycerate kinase compare
IAI47_05125 -0.8 -1.4 hypothetical protein compare
IAI47_17560 -0.8 -0.6 ROK family transcriptional regulator compare
IAI47_13545 -0.8 -3.4 6-phosphogluconolactonase compare
IAI47_01830 -0.8 -4.4 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_08045 -0.8 -1.4 NUDIX domain-containing protein compare
IAI47_06400 -0.8 -1.0 NADH-quinone oxidoreductase subunit J compare
IAI47_09505 -0.8 -1.4 YnbE family lipoprotein compare
IAI47_07815 -0.8 -3.1 phosphonate ABC transporter, permease protein PhnE compare
IAI47_04350 -0.8 -4.9 glutamate--cysteine ligase compare
IAI47_12760 -0.8 -4.1 porin OmpF compare
IAI47_20415 -0.7 -3.3 two-component system response regulator DcuR compare
IAI47_14390 -0.7 -1.8 NfeD family protein compare
IAI47_19025 -0.7 -3.1 LacI family DNA-binding transcriptional regulator compare
IAI47_11820 -0.7 -2.9 sugar-binding transcriptional regulator compare
IAI47_10575 -0.7 -1.2 hypothetical protein compare
IAI47_01715 -0.7 -2.6 malonate decarboxylase holo-ACP synthase compare
IAI47_14150 -0.7 -3.9 AI-2E family transporter compare
IAI47_05630 -0.7 -1.3 hypothetical protein compare
IAI47_12105 -0.7 -2.8 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_16095 -0.7 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_11635 -0.7 -1.8 hypothetical protein compare
IAI47_06900 -0.7 -1.1 phosphatase PAP2 family protein compare
IAI47_15025 -0.7 -1.1 transcriptional regulator LldR compare
IAI47_12650 -0.7 -2.4 macrodomain Ter protein MatP compare
IAI47_09095 -0.7 -2.0 YciU family protein compare
IAI47_08360 -0.7 -3.3 aldo/keto reductase compare
IAI47_15005 -0.7 -0.9 hypothetical protein compare
IAI47_14555 -0.7 -1.0 hemolysin expression modulator Hha compare
IAI47_11505 -0.7 -1.7 hypothetical protein compare
IAI47_09410 -0.7 -1.2 phage shock protein PspD compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms