Experiment set5IT062 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

200 most important genes:

  gene name fitness t score description  
CSW01_01295 -2.5 -1.7 ABC transporter permease compare
CSW01_01300 -2.4 -5.4 sugar ABC transporter compare
CSW01_13420 -2.3 -3.1 elongation factor P--(R)-beta-lysine ligase compare
CSW01_05575 -2.1 -3.6 phosphate acetyltransferase compare
CSW01_04650 -2.0 -1.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_14680 -1.9 -2.0 aminotransferase compare
CSW01_08450 -1.8 -2.7 antimicrobial peptide ABC transporter permease SapB compare
CSW01_03795 -1.5 -1.3 phosphate ABC transporter ATP-binding protein compare
CSW01_03475 -1.3 -4.2 ATP-dependent RNA helicase SrmB compare
CSW01_03330 -1.3 -2.2 transcription elongation factor GreA compare
CSW01_13285 -1.2 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_16310 -1.2 -1.4 DUF3709 domain-containing protein compare
CSW01_18270 -1.1 -2.1 L-ectoine synthase compare
CSW01_10875 -1.1 -3.1 redox-regulated ATPase YchF compare
CSW01_16435 -1.1 -1.4 DUF3265 domain-containing protein compare
CSW01_13305 -1.0 -1.5 shikimate kinase compare
CSW01_05020 -1.0 -2.5 regulatory protein ToxS compare
CSW01_09525 -1.0 -0.6 DNA translocase FtsK compare
CSW01_11730 -1.0 -1.7 2-dehydropantoate 2-reductase compare
CSW01_13805 -1.0 -2.6 Hsp33 family molecular chaperone HslO compare
CSW01_17385 -0.9 -1.7 antibiotic biosynthesis monooxygenase compare
CSW01_10385 -0.9 -6.2 Fe(2+) transporter permease subunit FeoB compare
CSW01_05480 -0.9 -3.0 hypothetical protein compare
CSW01_05275 -0.9 -1.0 hypothetical protein compare
CSW01_10390 -0.9 -1.8 ferrous iron transport protein A compare
CSW01_12365 -0.9 -2.3 inorganic phosphate transporter compare
CSW01_09240 -0.9 -2.6 Holliday junction branch migration DNA helicase RuvB compare
CSW01_00025 -0.9 -1.0 membrane protein insertion efficiency factor YidD compare
CSW01_08705 -0.9 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_04820 -0.9 -4.8 serine hydroxymethyltransferase compare
CSW01_06030 -0.9 -2.2 helicase compare
CSW01_12320 -0.9 -1.7 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_14455 -0.8 -1.4 hypothetical protein compare
CSW01_06675 -0.8 -2.0 (Na+)-NQR maturation NqrM compare
CSW01_03410 -0.8 -1.5 polyribonucleotide nucleotidyltransferase compare
CSW01_10440 -0.8 -1.8 succinate dehydrogenase flavoprotein subunit compare
CSW01_14335 -0.8 -2.2 ATP-dependent helicase compare
CSW01_15730 -0.8 -0.8 VOC family protein compare
CSW01_15425 -0.8 -0.9 DUF3265 domain-containing protein compare
CSW01_00380 -0.8 -0.9 hypothetical protein compare
CSW01_07230 -0.8 -2.9 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_18350 -0.8 -0.7 cell division protein DedD compare
CSW01_03975 -0.7 -2.6 exodeoxyribonuclease VII large subunit compare
CSW01_09660 -0.7 -1.5 hypothetical protein compare
CSW01_04390 -0.7 -1.5 outer membrane protein assembly factor BamE compare
CSW01_16325 -0.7 -1.1 hypothetical protein compare
CSW01_13300 -0.7 -2.6 3-dehydroquinate synthase compare
CSW01_19435 -0.7 -1.4 hypothetical protein compare
CSW01_07460 -0.7 -1.0 ribosome modulation factor compare
CSW01_02970 -0.7 -3.2 glutamate--cysteine ligase compare
CSW01_08360 -0.7 -2.9 ABC transporter substrate-binding protein compare
CSW01_04375 -0.7 -1.7 SsrA-binding protein compare
CSW01_10400 -0.7 -1.8 zinc ABC transporter substrate-binding protein compare
CSW01_17780 -0.7 -1.4 hypothetical protein compare
CSW01_11670 -0.7 -0.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_02875 -0.7 -2.7 DNA recombination/repair protein RecA compare
CSW01_09365 -0.7 -2.9 pyruvate formate lyase 1-activating protein compare
CSW01_11915 -0.7 -2.1 hypothetical protein compare
CSW01_05350 -0.7 -1.7 hypothetical protein compare
CSW01_00085 -0.7 -1.1 heat-shock protein Hsp20 compare
CSW01_18115 -0.7 -2.4 molecular chaperone DnaJ compare
CSW01_15310 -0.7 -1.7 exoribonuclease R compare
CSW01_08255 -0.7 -1.8 ribosome recycling factor compare
CSW01_18375 -0.7 -2.4 GGDEF domain-containing protein compare
CSW01_05195 -0.7 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_17585 -0.7 -0.9 periplasmic nitrate reductase electron transfer subunit compare
CSW01_09620 -0.6 -1.0 trigger factor compare
CSW01_09245 -0.6 -1.8 Holliday junction branch migration protein RuvA compare
CSW01_14625 -0.6 -1.0 hypothetical protein compare
CSW01_03045 -0.6 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_03870 -0.6 -0.9 inositol monophosphatase compare
CSW01_18000 -0.6 -1.7 NUDIX hydrolase compare
CSW01_12250 -0.6 -2.2 site-specific tyrosine recombinase XerD compare
CSW01_08230 -0.6 -2.2 hypothetical protein compare
CSW01_18065 -0.6 -3.4 allophanate hydrolase compare
CSW01_07190 -0.6 -2.1 transcriptional regulator FNR compare
CSW01_07210 -0.6 -1.5 hypothetical protein compare
CSW01_11115 -0.6 -1.3 hypothetical protein compare
CSW01_06280 -0.6 -2.3 succinylglutamate desuccinylase compare
CSW01_04715 -0.6 -3.0 serine acetyltransferase compare
CSW01_11415 -0.6 -2.1 phenolic acid decarboxylase compare
CSW01_14510 -0.6 -2.8 oxidoreductase compare
CSW01_15680 -0.6 -1.3 DUF3265 domain-containing protein compare
CSW01_03915 -0.6 -1.1 Fe-S assembly protein IscX compare
CSW01_15870 -0.6 -1.0 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_04360 -0.6 -0.7 IS5/IS1182 family transposase compare
CSW01_07445 -0.6 -0.9 macrodomain Ter protein MatP compare
CSW01_04490 -0.6 -1.5 DUF533 domain-containing protein compare
CSW01_05380 -0.6 -1.0 YkgJ family cysteine cluster protein compare
CSW01_02450 -0.6 -3.1 pyrroline-5-carboxylate reductase compare
CSW01_03075 -0.6 -1.7 phosphoheptose isomerase compare
CSW01_01860 -0.6 -1.2 SlyX protein compare
CSW01_17370 -0.6 -1.4 hypothetical protein compare
CSW01_15810 -0.6 -0.9 hypothetical protein compare
CSW01_01490 -0.6 -1.5 Fis family transcriptional regulator compare
CSW01_17490 -0.6 -2.0 aminoimidazole riboside kinase compare
CSW01_18775 -0.6 -2.6 hypothetical protein compare
CSW01_00330 -0.6 -1.6 fluoride efflux transporter CrcB compare
CSW01_15520 -0.5 -1.8 hypothetical protein compare
CSW01_05165 -0.5 -0.6 electron transport complex subunit RsxC compare
CSW01_00675 -0.5 -1.0 hypothetical protein compare
CSW01_17640 -0.5 -2.2 phasin family protein compare
CSW01_14245 -0.5 -1.3 hypothetical protein compare
CSW01_09785 -0.5 -2.7 septum site-determining protein MinC compare
CSW01_18030 -0.5 -1.0 hypothetical protein compare
CSW01_09350 -0.5 -3.3 formate C-acetyltransferase compare
CSW01_14125 -0.5 -1.8 1,4-alpha-glucan branching enzyme compare
CSW01_17200 -0.5 -1.6 DUF333 domain-containing protein compare
CSW01_14765 -0.5 -2.6 cation:proton antiporter compare
CSW01_04080 -0.5 -1.9 hypothetical protein compare
CSW01_07215 -0.5 -1.5 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_16470 -0.5 -0.8 DUF645 domain-containing protein compare
CSW01_17135 -0.5 -1.9 hypothetical protein compare
CSW01_17165 -0.5 -1.5 DUF296 domain-containing protein compare
CSW01_02940 -0.5 -2.7 oxaloacetate decarboxylase subunit gamma compare
CSW01_08585 -0.5 -0.7 DUF4250 domain-containing protein compare
CSW01_09045 -0.5 -1.4 hypothetical protein compare
CSW01_08985 -0.5 -0.9 6-phospho-beta-glucosidase compare
CSW01_14100 -0.5 -1.3 hypothetical protein compare
CSW01_18365 -0.5 -1.8 LysE family translocator compare
CSW01_16785 -0.5 -1.5 hypothetical protein compare
CSW01_07155 -0.5 -1.2 spermidine/putrescine ABC transporter permease PotB compare
CSW01_03025 -0.5 -1.5 hypothetical protein compare
CSW01_03845 -0.5 -0.5 hypothetical protein compare
CSW01_15430 -0.5 -1.2 hypothetical protein compare
CSW01_14135 -0.5 -1.8 type VI secretion system tube protein Hcp compare
CSW01_18330 -0.5 -2.0 drug/metabolite DMT transporter permease compare
CSW01_11725 -0.5 -2.2 hypothetical protein compare
CSW01_06825 -0.5 -0.6 acylphosphatase compare
CSW01_18860 -0.5 -2.7 maltose/maltodextrin import ATP-binding protein MalK compare
CSW01_18335 -0.5 -1.3 sugar O-acetyltransferase compare
CSW01_16990 -0.5 -0.8 hypothetical protein compare
CSW01_10510 -0.5 -1.2 DUF4442 domain-containing protein compare
CSW01_05545 -0.5 -1.9 peptide ABC transporter substrate-binding protein compare
CSW01_16255 -0.5 -1.5 hypothetical protein compare
CSW01_15865 -0.5 -1.0 DUF3465 domain-containing protein compare
CSW01_09555 -0.5 -1.8 tRNA-(ms[2]io[6]A)-hydroxylase compare
CSW01_10750 -0.5 -1.6 outer membrane protein assembly factor BamC compare
CSW01_16800 -0.5 -2.8 anaerobic ribonucleoside-triphosphate reductase compare
CSW01_11710 -0.5 -2.3 transcriptional regulator compare
CSW01_05370 -0.5 -0.9 YbaB/EbfC family nucleoid-associated protein compare
CSW01_15250 -0.5 -1.8 cupin domain-containing protein compare
CSW01_10255 -0.5 -0.6 cytochrome c-type biogenesis protein CcmH compare
CSW01_10715 -0.4 -1.1 DUF2919 domain-containing protein compare
CSW01_08565 -0.4 -0.5 hypothetical protein compare
CSW01_16455 -0.4 -1.5 DJ-1/PfpI family protein compare
CSW01_05260 -0.4 -1.3 hypothetical protein compare
CSW01_02670 -0.4 -1.4 hypothetical protein compare
CSW01_16970 -0.4 -1.5 alkylphosphonate utilization protein compare
CSW01_14490 -0.4 -2.6 endo-1,4-beta-xylanase compare
CSW01_09935 -0.4 -2.0 hypothetical protein compare
CSW01_19460 -0.4 -1.8 PEGA domain-containing protein compare
CSW01_10560 -0.4 -1.2 chorismate synthase compare
CSW01_16815 -0.4 -1.7 ATP-dependent zinc protease compare
CSW01_09955 -0.4 -1.8 L-asparaginase 1 compare
CSW01_05280 -0.4 -1.9 uridine kinase compare
CSW01_18015 -0.4 -1.7 TetR/AcrR family transcriptional regulator compare
CSW01_04930 -0.4 -1.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_05815 -0.4 -0.4 glutaredoxin compare
CSW01_06415 -0.4 -0.6 MBL fold metallo-hydrolase compare
CSW01_16025 -0.4 -0.9 hypothetical protein compare
CSW01_01015 -0.4 -2.9 DNA helicase II compare
CSW01_19600 -0.4 -1.6 hypothetical protein compare
CSW01_15920 -0.4 -1.5 DUF3265 domain-containing protein compare
CSW01_09180 -0.4 -1.8 quinolinate synthase compare
CSW01_03195 -0.4 -1.4 transcriptional regulator compare
CSW01_01830 -0.4 -0.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_18595 -0.4 -1.2 VOC family protein compare
CSW01_08955 -0.4 -1.1 transcriptional regulator compare
CSW01_03950 -0.4 -1.1 hypothetical protein compare
CSW01_17075 -0.4 -1.8 stress response translation initiation inhibitor YciH compare
CSW01_06940 -0.4 -2.2 hypothetical protein compare
CSW01_10985 -0.4 -1.8 DUF2590 domain-containing protein compare
CSW01_03415 -0.4 -1.4 lipoprotein NlpI compare
CSW01_17905 -0.4 -1.2 aquaporin family protein compare
CSW01_15120 -0.4 -1.1 iron(III) ABC transporter permease compare
CSW01_04195 -0.4 -2.0 class I SAM-dependent methyltransferase compare
CSW01_19425 -0.4 -2.0 Lrp/AsnC family transcriptional regulator compare
CSW01_16905 -0.4 -1.5 DedA family protein compare
CSW01_17855 -0.4 -2.4 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_04910 -0.4 -0.9 PhoH family protein compare
CSW01_13965 -0.4 -2.4 YigZ family protein compare
CSW01_01800 -0.4 -0.8 tRNA-Met compare
CSW01_04585 -0.4 -1.7 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_15900 -0.4 -1.7 hypothetical protein compare
CSW01_17255 -0.4 -1.1 nucleoside diphosphate kinase regulator compare
CSW01_07810 -0.4 -0.9 glycerophosphoryl diester phosphodiesterase compare
CSW01_08050 -0.4 -1.4 chemotaxis protein CheV compare
CSW01_15215 -0.4 -1.5 cytochrome b compare
CSW01_03150 -0.4 -2.3 tRNA glutamyl-Q(34) synthetase GluQRS compare
CSW01_17925 -0.4 -2.1 3-oxoacyl-ACP synthase III compare
CSW01_03930 -0.4 -1.7 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN compare
CSW01_08425 -0.4 -1.2 envelope stress response membrane protein PspC compare
CSW01_09875 -0.4 -1.8 5'-deoxynucleotidase compare
CSW01_15125 -0.4 -0.9 iron(III) ABC transporter ATP-binding protein compare
CSW01_14815 -0.4 -0.8 hypothetical protein compare
CSW01_17330 -0.4 -1.9 transketolase compare
CSW01_15295 -0.4 -2.0 aspartate aminotransferase family protein compare
CSW01_07595 -0.4 -2.6 formate dehydrogenase compare
CSW01_08435 -0.4 -1.6 phage shock protein PspA compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_anaerobic experiments

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms