Experiment set5IT061 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_60MIN_ZN4B

200 most important genes:

  gene name fitness t score description  
CSW01_05265 -4.2 -2.3 methionine--tRNA ligase compare
CSW01_13420 -3.6 -2.5 elongation factor P--(R)-beta-lysine ligase compare
CSW01_17780 -2.0 -3.4 hypothetical protein compare
CSW01_05575 -2.0 -4.5 phosphate acetyltransferase compare
CSW01_11410 -1.8 -3.1 nitrogen regulatory protein P-II compare
CSW01_18350 -1.8 -1.1 cell division protein DedD compare
CSW01_14680 -1.8 -1.9 aminotransferase compare
CSW01_13305 -1.6 -2.3 shikimate kinase compare
CSW01_12365 -1.6 -3.5 inorganic phosphate transporter compare
CSW01_16195 -1.3 -1.4 DUF645 domain-containing protein compare
CSW01_03410 -1.3 -1.4 polyribonucleotide nucleotidyltransferase compare
CSW01_03870 -1.3 -1.6 inositol monophosphatase compare
CSW01_00450 -1.3 -2.0 SCP2 domain-containing protein compare
CSW01_01515 -1.2 -2.0 type II 3-dehydroquinate dehydratase compare
CSW01_11745 -1.2 -2.3 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_07720 -1.2 -1.4 DUF3802 domain-containing protein compare
CSW01_10875 -1.2 -3.4 redox-regulated ATPase YchF compare
CSW01_00540 -1.2 -1.3 hypothetical protein compare
CSW01_17125 -1.1 -3.0 esterase compare
CSW01_01295 -1.1 -1.7 ABC transporter permease compare
CSW01_11565 -1.1 -2.4 transcriptional regulator NrdR compare
CSW01_05240 -1.1 -2.1 CBS domain-containing protein compare
CSW01_18030 -1.0 -2.6 hypothetical protein compare
CSW01_09525 -1.0 -0.6 DNA translocase FtsK compare
CSW01_13805 -1.0 -2.5 Hsp33 family molecular chaperone HslO compare
CSW01_16460 -1.0 -2.0 acetyltransferase compare
CSW01_14235 -0.9 -3.6 copper chaperone PCu(A)C compare
CSW01_19275 -0.9 -3.1 amino acid ABC transporter ATP-binding protein compare
CSW01_00025 -0.9 -1.0 membrane protein insertion efficiency factor YidD compare
CSW01_07130 -0.9 -1.1 hypothetical protein compare
CSW01_08515 -0.9 -1.5 trimethylamine N-oxide reductase system protein TorE compare
CSW01_01490 -0.9 -1.6 Fis family transcriptional regulator compare
CSW01_13285 -0.9 -2.2 ribulose-phosphate 3-epimerase compare
CSW01_08710 -0.9 -1.9 hypothetical protein compare
CSW01_03915 -0.8 -1.5 Fe-S assembly protein IscX compare
CSW01_10565 -0.8 -1.0 hypothetical protein compare
CSW01_08175 -0.8 -1.3 hypothetical protein compare
CSW01_17880 -0.8 -1.6 hypothetical protein compare
CSW01_12250 -0.8 -3.1 site-specific tyrosine recombinase XerD compare
CSW01_08675 -0.8 -1.3 DUF2007 domain-containing protein compare
CSW01_15120 -0.8 -3.0 iron(III) ABC transporter permease compare
CSW01_10245 -0.8 -2.9 ABC transporter compare
CSW01_12320 -0.8 -1.3 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_11940 -0.8 -1.7 DUF3545 domain-containing protein compare
CSW01_00085 -0.8 -1.6 heat-shock protein Hsp20 compare
CSW01_08615 -0.8 -2.6 Lrp/AsnC family transcriptional regulator compare
CSW01_15810 -0.8 -1.2 hypothetical protein compare
CSW01_13220 -0.8 -1.7 hypothetical protein compare
CSW01_09485 -0.8 -2.2 DUF1425 domain-containing protein compare
CSW01_16325 -0.8 -1.1 hypothetical protein compare
CSW01_00465 -0.8 -1.2 twin-arginine translocase subunit TatB compare
CSW01_12130 -0.8 -2.0 DUF721 domain-containing protein compare
CSW01_04820 -0.8 -4.0 serine hydroxymethyltransferase compare
CSW01_10400 -0.8 -2.1 zinc ABC transporter substrate-binding protein compare
CSW01_09350 -0.8 -4.7 formate C-acetyltransferase compare
CSW01_10835 -0.7 -2.2 hypothetical protein compare
CSW01_07440 -0.7 -1.5 DUF3634 domain-containing protein compare
CSW01_04930 -0.7 -1.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_11115 -0.7 -2.0 hypothetical protein compare
CSW01_03475 -0.7 -2.4 ATP-dependent RNA helicase SrmB compare
CSW01_06935 -0.7 -1.7 exonuclease compare
CSW01_15870 -0.7 -1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_06870 -0.7 -2.3 7-carboxy-7-deazaguanine synthase QueE compare
CSW01_03975 -0.7 -2.5 exodeoxyribonuclease VII large subunit compare
CSW01_19435 -0.7 -0.7 hypothetical protein compare
CSW01_05590 -0.7 -3.0 DNA-binding protein VF530 compare
CSW01_15560 -0.7 -1.3 lipocalin compare
CSW01_09240 -0.7 -2.1 Holliday junction branch migration DNA helicase RuvB compare
CSW01_11525 -0.7 -1.8 hypothetical protein compare
CSW01_16205 -0.7 -1.4 DUF3465 domain-containing protein compare
CSW01_15310 -0.7 -1.5 exoribonuclease R compare
CSW01_17895 -0.7 -2.6 hypothetical protein compare
CSW01_09625 -0.7 -0.9 hypothetical protein compare
CSW01_07230 -0.7 -2.6 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_14100 -0.7 -1.5 hypothetical protein compare
CSW01_08425 -0.7 -1.6 envelope stress response membrane protein PspC compare
CSW01_10385 -0.7 -4.0 Fe(2+) transporter permease subunit FeoB compare
CSW01_18140 -0.7 -1.5 hypothetical protein compare
CSW01_15755 -0.7 -1.2 hypothetical protein compare
CSW01_09365 -0.6 -1.8 pyruvate formate lyase 1-activating protein compare
CSW01_08345 -0.6 -1.3 hypothetical protein compare
CSW01_00780 -0.6 -1.8 hypothetical protein compare
CSW01_11230 -0.6 -1.9 chemotaxis protein methyltransferase 1 compare
CSW01_01920 -0.6 -1.3 bacterioferritin compare
CSW01_15460 -0.6 -1.4 type B-5 chloramphenicol O-acetyltransferase CatB9 compare
CSW01_12200 -0.6 -1.5 ribosomal RNA small subunit methyltransferase H compare
CSW01_03325 -0.6 -1.3 porin compare
CSW01_06920 -0.6 -0.9 DUF2760 domain-containing protein compare
CSW01_03785 -0.6 -1.4 phosphate ABC transporter permease compare
CSW01_13300 -0.6 -2.5 3-dehydroquinate synthase compare
CSW01_03745 -0.6 -1.3 ferredoxin compare
CSW01_07870 -0.6 -1.5 ABC transporter ATP-binding protein compare
CSW01_10130 -0.6 -3.0 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_16020 -0.6 -1.9 DUF3709 domain-containing protein compare
CSW01_09550 -0.6 -1.8 DNA repair protein compare
CSW01_17575 -0.6 -1.7 mycothiol reductase compare
CSW01_00560 -0.6 -1.6 DNA polymerase I compare
CSW01_18725 -0.6 -0.8 TetR/AcrR family transcriptional regulator compare
CSW01_18635 -0.6 -1.5 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_14925 -0.6 -2.5 hypothetical protein compare
CSW01_07460 -0.6 -0.8 ribosome modulation factor compare
CSW01_14125 -0.6 -2.0 1,4-alpha-glucan branching enzyme compare
CSW01_05490 -0.6 -2.5 L-threonylcarbamoyladenylate synthase compare
CSW01_14675 -0.6 -1.9 nicotinamide mononucleotide transporter compare
CSW01_05675 -0.6 -2.4 nuclear transport factor 2 family protein compare
CSW01_08610 -0.6 -1.2 LysE family translocator compare
CSW01_14055 -0.5 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_08565 -0.5 -1.0 hypothetical protein compare
CSW01_18575 -0.5 -2.3 amidohydrolase compare
CSW01_09955 -0.5 -2.5 L-asparaginase 1 compare
CSW01_15000 -0.5 -1.1 rfbP protein compare
CSW01_03075 -0.5 -1.3 phosphoheptose isomerase compare
CSW01_05580 -0.5 -2.1 acetate kinase compare
CSW01_13565 -0.5 -1.9 cell division protein ZapB compare
CSW01_15895 -0.5 -2.8 hypothetical protein compare
CSW01_08590 -0.5 -2.4 hypothetical protein compare
CSW01_16785 -0.5 -1.7 hypothetical protein compare
CSW01_16470 -0.5 -1.0 DUF645 domain-containing protein compare
CSW01_11760 -0.5 -2.1 DUF2850 domain-containing protein compare
CSW01_15225 -0.5 -1.9 antibiotic acetyltransferase compare
CSW01_18525 -0.5 -0.6 integrase compare
CSW01_16505 -0.5 -1.3 DUF645 domain-containing protein compare
CSW01_11125 -0.5 -2.5 hypothetical protein compare
CSW01_15990 -0.5 -0.9 hypothetical protein compare
CSW01_06675 -0.5 -1.0 (Na+)-NQR maturation NqrM compare
CSW01_18735 -0.5 -1.7 hypothetical protein compare
CSW01_03980 -0.5 -2.3 IMP dehydrogenase compare
CSW01_18075 -0.5 -1.7 nucleotide sugar dehydrogenase compare
CSW01_06820 -0.5 -1.9 ribosomal RNA large subunit methyltransferase I compare
CSW01_03415 -0.5 -1.8 lipoprotein NlpI compare
CSW01_09970 -0.5 -1.4 peptide-methionine (R)-S-oxide reductase compare
CSW01_16590 -0.5 -0.7 N-acetyltransferase compare
CSW01_07550 -0.5 -1.5 GntR family transcriptional regulator compare
CSW01_10190 -0.5 -1.8 nucleoid-associated protein compare
CSW01_16040 -0.5 -1.3 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_10485 -0.5 -0.6 DUF2788 domain-containing protein compare
CSW01_03330 -0.5 -1.0 transcription elongation factor GreA compare
CSW01_04515 -0.5 -2.4 50S ribosomal protein L36 compare
CSW01_10390 -0.5 -1.6 ferrous iron transport protein A compare
CSW01_03195 -0.5 -2.2 transcriptional regulator compare
CSW01_17370 -0.5 -1.1 hypothetical protein compare
CSW01_15105 -0.5 -2.2 class II glutamine amidotransferase compare
CSW01_15150 -0.5 -1.0 hypothetical protein compare
CSW01_02450 -0.5 -2.4 pyrroline-5-carboxylate reductase compare
CSW01_15535 -0.5 -1.3 NUDIX hydrolase compare
CSW01_00415 -0.5 -0.9 hypothetical protein compare
CSW01_17075 -0.5 -1.3 stress response translation initiation inhibitor YciH compare
CSW01_05260 -0.5 -1.6 hypothetical protein compare
CSW01_09045 -0.5 -2.4 hypothetical protein compare
CSW01_18185 -0.5 -1.5 DEAD/DEAH box family ATP-dependent RNA helicase compare
CSW01_18060 -0.5 -1.0 allophanate hydrolase compare
CSW01_15430 -0.5 -1.0 hypothetical protein compare
CSW01_03695 -0.5 -1.6 ribosomal large subunit pseudouridine synthase D compare
CSW01_19415 -0.5 -2.2 hypothetical protein compare
CSW01_01385 -0.5 -2.1 DUF416 domain-containing protein compare
CSW01_01845 -0.5 -2.6 protease modulator HflK compare
CSW01_05505 -0.5 -1.0 response regulator compare
CSW01_10055 -0.5 -2.9 PTS glucose transporter subunit IIBC compare
CSW01_04285 -0.4 -0.8 toxin coregulated pilus biosynthesis protein R compare
CSW01_09250 -0.4 -0.4 crossover junction endodeoxyribonuclease RuvC compare
CSW01_11080 -0.4 -1.8 transcriptional regulator compare
CSW01_11405 -0.4 -2.2 EEP domain-containing protein compare
CSW01_18450 -0.4 -2.3 hypothetical protein compare
CSW01_04375 -0.4 -1.2 SsrA-binding protein compare
CSW01_11780 -0.4 -0.6 exodeoxyribonuclease V subunit beta compare
CSW01_05440 -0.4 -1.2 transcriptional regulator compare
CSW01_05020 -0.4 -1.4 regulatory protein ToxS compare
CSW01_18545 -0.4 -2.1 non-hemolytic enterotoxin lytic component L1 compare
CSW01_05480 -0.4 -1.9 hypothetical protein compare
CSW01_07600 -0.4 -1.3 transcriptional initiation protein Tat compare
CSW01_14640 -0.4 -2.1 DUF3012 domain-containing protein compare
CSW01_04130 -0.4 -2.5 citrate lyase subunit alpha compare
CSW01_18365 -0.4 -2.2 LysE family translocator compare
CSW01_02245 -0.4 -1.6 universal stress protein compare
CSW01_09090 -0.4 -1.7 NYN domain-containing protein compare
CSW01_02315 -0.4 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_03850 -0.4 -2.5 tRNA guanosine(34) transglycosylase Tgt compare
CSW01_09915 -0.4 -1.1 starvation-inducible protein compare
CSW01_16920 -0.4 -0.7 hypothetical protein compare
CSW01_15505 -0.4 -1.6 HNH endonuclease compare
CSW01_18270 -0.4 -0.9 L-ectoine synthase compare
CSW01_00385 -0.4 -1.8 transcriptional regulator AsnC compare
CSW01_16730 -0.4 -1.3 glutathione S-transferase compare
CSW01_15275 -0.4 -1.7 hypothetical protein compare
CSW01_10000 -0.4 -1.6 23S rRNA (guanine(745)-N(1))-methyltransferase compare
CSW01_02490 -0.4 -1.7 glutathione synthetase compare
CSW01_17875 -0.4 -2.2 DUF480 domain-containing protein compare
CSW01_17155 -0.4 -1.8 glutathione S-transferase compare
CSW01_07620 -0.4 -1.1 DUF3305 domain-containing protein compare
CSW01_17325 -0.4 -1.8 transaldolase compare
CSW01_16575 -0.4 -1.0 acetyltransferase compare
CSW01_16310 -0.4 -0.7 DUF3709 domain-containing protein compare
CSW01_05315 -0.4 -1.1 RNA polymerase subunit sigma compare
CSW01_09830 -0.4 -1.6 XRE family transcriptional regulator compare
CSW01_07005 -0.4 -1.0 hypothetical protein compare
CSW01_07285 -0.4 -0.8 hypothetical protein compare
CSW01_02440 -0.4 -1.3 YggU family protein compare
CSW01_02875 -0.4 -1.9 DNA recombination/repair protein RecA compare
CSW01_07065 -0.4 -1.9 multidrug resistance protein compare
CSW01_02820 -0.4 -2.3 5'-nucleotidase SurE compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_anaerobic experiments

For lb_anaerobic LB across organisms