Experiment set5IT061 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14485 +2.7 17.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS23510 +1.9 8.3 energy transducer TonB compare
CA265_RS17680 +1.5 9.4 hypothetical protein compare
CA265_RS05655 +1.4 11.3 hypothetical protein compare
CA265_RS01960 +1.4 2.1 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS22805 +1.4 10.9 glycosyl transferase compare
CA265_RS17685 +1.3 7.4 hypothetical protein compare
CA265_RS21060 +1.2 3.1 hypothetical protein compare
CA265_RS22800 +1.2 9.2 glycosyl transferase compare
CA265_RS05660 +1.2 8.6 DNA-binding response regulator compare
CA265_RS12665 +1.1 3.0 cold-shock protein compare
CA265_RS04640 +1.1 6.0 efflux transporter periplasmic adaptor subunit compare
CA265_RS08895 +1.1 7.2 mannose-1-phosphate guanylyltransferase compare
CA265_RS23505 +1.0 3.1 biopolymer transporter ExbD compare
CA265_RS22790 +1.0 7.0 hypothetical protein compare
CA265_RS02765 +1.0 2.5 cell division protein ZapA compare
CA265_RS03475 +1.0 8.0 glutamate dehydrogenase compare
CA265_RS23515 +1.0 4.7 hypothetical protein compare
CA265_RS18945 +0.9 6.1 LacI family transcriptional regulator compare
CA265_RS00665 +0.9 1.9 lysine transporter LysE compare
CA265_RS23520 +0.9 7.3 phosphate ABC transporter substrate-binding protein compare
CA265_RS04645 +0.9 6.6 cation transporter compare
CA265_RS14935 +0.9 8.0 hypothetical protein compare
CA265_RS17720 +0.9 7.7 hypothetical protein compare
CA265_RS09725 +0.9 7.9 tolB protein precursor compare
CA265_RS23190 +0.9 1.5 transcription elongation factor GreA compare
CA265_RS22165 +0.8 1.9 hypothetical protein compare
CA265_RS06400 +0.8 5.8 DNA-binding response regulator compare
CA265_RS21745 +0.8 4.1 hypothetical protein compare
CA265_RS04635 +0.8 6.7 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS23145 +0.8 2.7 hypothetical protein compare
CA265_RS23305 +0.8 1.7 hypothetical protein compare
CA265_RS25330 +0.8 2.6 DoxX family protein compare
CA265_RS17710 +0.8 4.9 hypothetical protein compare
CA265_RS15050 +0.8 4.5 lysine transporter LysE compare
CA265_RS06120 +0.8 4.6 UDP-glucose--hexose-1-phosphate uridylyltransferase (EC 2.7.7.12) (from data) compare
CA265_RS14950 +0.8 1.6 hypothetical protein compare
CA265_RS15085 +0.7 5.0 hypothetical protein compare
CA265_RS10980 +0.7 4.5 histidine kinase compare
CA265_RS08880 +0.7 5.3 chromate transporter compare
CA265_RS13970 +0.7 6.2 hypothetical protein compare
CA265_RS05330 +0.7 2.0 hypothetical protein compare
CA265_RS23635 +0.7 5.8 gliding motility lipoprotein GldJ compare
CA265_RS18130 +0.7 5.3 gliding motility-associated lipoprotein compare
CA265_RS19245 +0.7 4.5 hypothetical protein compare
CA265_RS17145 +0.7 3.6 malate:quinone oxidoreductase compare
CA265_RS19330 +0.7 2.9 dTDP-4-dehydrorhamnose reductase compare
CA265_RS06585 +0.7 5.0 hypothetical protein compare
CA265_RS04650 +0.7 5.0 two-component sensor histidine kinase compare
CA265_RS00885 +0.7 3.0 hypothetical protein compare
CA265_RS09415 +0.7 1.1 hypothetical protein compare
CA265_RS07925 +0.7 3.0 hypothetical protein compare
CA265_RS17705 +0.7 5.3 hypothetical protein compare
CA265_RS19030 +0.7 3.4 hypothetical protein compare
CA265_RS14940 +0.7 2.3 hypothetical protein compare
CA265_RS16005 +0.7 3.1 hypothetical protein compare
CA265_RS13200 +0.7 3.8 phosphatase PAP2 family protein compare
CA265_RS02760 +0.7 0.8 hypothetical protein compare
CA265_RS15200 +0.7 2.5 hypothetical protein compare
CA265_RS00125 +0.7 4.1 polysaccharide deacetylase compare
CA265_RS18120 +0.7 4.8 gliding motility protein GldM compare
CA265_RS01035 +0.6 2.6 hypothetical protein compare
CA265_RS07905 +0.6 3.0 antitermination protein NusG compare
CA265_RS07865 +0.6 3.9 aquaporin compare
CA265_RS21715 +0.6 3.4 hypothetical protein compare
CA265_RS10990 +0.6 3.6 hypothetical protein compare
CA265_RS00585 +0.6 5.5 translocation/assembly module TamB compare
CA265_RS19940 +0.6 5.3 hypothetical protein compare
CA265_RS04290 +0.6 2.9 hypothetical protein compare
CA265_RS13655 +0.6 3.9 hypothetical protein compare
CA265_RS04330 +0.6 3.0 transcriptional regulator compare
CA265_RS01975 +0.6 2.3 cell division protein compare
CA265_RS22750 +0.6 2.8 hypothetical protein compare
CA265_RS17205 +0.6 3.7 rhomboid family intramembrane serine protease compare
CA265_RS14615 +0.6 2.2 hypothetical protein compare
CA265_RS18090 +0.6 5.1 gliding motility protein compare
CA265_RS17440 +0.6 4.7 Fis family transcriptional regulator compare
CA265_RS15115 +0.6 3.8 porin compare
CA265_RS01875 +0.6 3.2 hypothetical protein compare
CA265_RS09740 +0.6 0.8 transcriptional regulator compare
CA265_RS20610 +0.6 1.4 hypothetical protein compare
CA265_RS10510 +0.6 1.4 hypothetical protein compare
CA265_RS01370 +0.6 2.7 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA265_RS22035 +0.6 1.5 hypothetical protein compare
CA265_RS23985 +0.6 4.1 gliding motility lipoprotein GldB compare
CA265_RS11995 +0.6 2.1 RNA polymerase subunit sigma compare
CA265_RS23950 +0.6 1.8 ribonuclease HII compare
CA265_RS18115 +0.6 4.0 gliding motility protein GldN compare
CA265_RS09375 +0.6 3.3 hypothetical protein compare
CA265_RS19350 +0.6 3.4 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare
CA265_RS17775 +0.6 2.1 hypothetical protein compare
CA265_RS17455 +0.6 3.2 hypothetical protein compare
CA265_RS07910 +0.6 3.9 UDP-N-acetyl-D-galactosamine dehydrogenase compare
CA265_RS15070 +0.6 2.3 hypothetical protein compare
CA265_RS12715 +0.6 3.6 hypothetical protein compare
CA265_RS00325 +0.6 2.4 hypothetical protein compare
CA265_RS22460 +0.5 2.4 ABC transporter ATP-binding protein compare
CA265_RS21840 +0.5 2.1 phosphohydrolase compare
CA265_RS16295 +0.5 3.6 LacI family transcriptional regulator compare
CA265_RS07935 +0.5 3.1 hypothetical protein compare
CA265_RS14580 +0.5 2.9 cytidylate kinase compare
CA265_RS00875 +0.5 2.9 alkaline phosphatase compare
CA265_RS09270 +0.5 1.8 hypothetical protein compare
CA265_RS24845 +0.5 2.4 STAS/SEC14 domain-containing protein compare
CA265_RS07895 +0.5 2.7 sugar transporter compare
CA265_RS19540 +0.5 4.2 tail-specific protease compare
CA265_RS23525 +0.5 3.2 hypothetical protein compare
CA265_RS03260 +0.5 3.8 multidrug ABC transporter ATP-binding protein compare
CA265_RS06395 +0.5 3.1 hypothetical protein compare
CA265_RS25215 +0.5 2.5 MBL fold hydrolase compare
CA265_RS07920 +0.5 3.2 aminotransferase DegT compare
CA265_RS06365 +0.5 4.1 hypothetical protein compare
CA265_RS15195 +0.5 3.8 hypothetical protein compare
CA265_RS00940 +0.5 1.7 hypothetical protein compare
CA265_RS03295 +0.5 3.9 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS16990 +0.5 1.5 hypothetical protein compare
CA265_RS18990 +0.5 4.5 cell surface protein SprA compare
CA265_RS21915 +0.5 3.7 LacI family transcriptional regulator compare
CA265_RS13720 +0.5 1.0 4-oxalocrotonate tautomerase compare
CA265_RS24170 +0.5 3.2 MFS transporter compare
CA265_RS10615 +0.5 1.7 diacylglycerol kinase compare
CA265_RS05350 +0.5 3.6 hypothetical protein compare
CA265_RS05365 +0.5 3.0 hypothetical protein compare
CA265_RS19190 +0.5 2.7 transferase compare
CA265_RS19640 +0.5 2.0 hypothetical protein compare
CA265_RS16550 +0.5 1.6 acyl carrier protein compare
CA265_RS17715 +0.5 4.5 hypothetical protein compare
CA265_RS20755 +0.5 3.1 hypothetical protein compare
CA265_RS14345 +0.5 2.8 hypothetical protein compare
CA265_RS21080 +0.5 1.4 hypothetical protein compare
CA265_RS04655 +0.5 2.5 DNA-binding response regulator compare
CA265_RS23220 +0.5 2.7 12-oxophytodienoate reductase compare
CA265_RS18125 +0.5 2.7 gliding motility protein GldL compare
CA265_RS19560 +0.5 1.3 hypothetical protein compare
CA265_RS10235 +0.5 0.9 hypothetical protein compare
CA265_RS25435 +0.5 1.5 hypothetical protein compare
CA265_RS24445 +0.4 1.4 hypothetical protein compare
CA265_RS23425 +0.4 1.5 N-acetylmuramic acid 6-phosphate etherase compare
CA265_RS16140 +0.4 0.8 hypothetical protein compare
CA265_RS00795 +0.4 2.1 HAD family hydrolase compare
CA265_RS20880 +0.4 2.6 hypothetical protein compare
CA265_RS06040 +0.4 2.1 hypothetical protein compare
CA265_RS04245 +0.4 1.3 hypothetical protein compare
CA265_RS19910 +0.4 1.6 GDSL family lipase compare
CA265_RS24455 +0.4 1.6 hypothetical protein compare
CA265_RS24945 +0.4 1.3 hypothetical protein compare
CA265_RS19500 +0.4 2.0 methyltransferase type 11 compare
CA265_RS21130 +0.4 2.7 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS14550 +0.4 2.9 hypothetical protein compare
CA265_RS10665 +0.4 2.1 Rossman fold protein, TIGR00730 family compare
CA265_RS08020 +0.4 2.3 hypothetical protein compare
CA265_RS06635 +0.4 1.7 hypothetical protein compare
CA265_RS21835 +0.4 1.0 hypothetical protein compare
CA265_RS03280 +0.4 1.5 hypothetical protein compare
CA265_RS19715 +0.4 2.8 xylose isomerase compare
CA265_RS07930 +0.4 2.0 group 1 glycosyl transferase compare
CA265_RS04295 +0.4 1.0 transcriptional regulator compare
CA265_RS07915 +0.4 2.0 lipopolysaccharide biosynthesis protein compare
CA265_RS24770 +0.4 1.7 hypothetical protein compare
CA265_RS25260 +0.4 1.5 hypothetical protein compare
CA265_RS01380 +0.4 2.0 hypothetical protein compare
CA265_RS24840 +0.4 2.8 hypothetical protein compare
CA265_RS14085 +0.4 2.6 hypothetical protein compare
CA265_RS23480 +0.4 2.3 hypothetical protein compare
CA265_RS10745 +0.4 3.2 diguanylate cyclase compare
CA265_RS00420 +0.4 1.5 FUSC family protein compare
CA265_RS01630 +0.4 2.1 glycosyl transferase family 2 compare
CA265_RS18085 +0.4 2.0 hypothetical protein compare
CA265_RS20650 +0.4 0.6 hypothetical protein compare
CA265_RS17225 +0.4 3.4 hypothetical protein compare
CA265_RS11855 +0.4 2.0 hypothetical protein compare
CA265_RS20175 +0.4 1.3 thiamine-phosphate diphosphorylase compare
CA265_RS06125 +0.4 2.2 galactokinase, -1-phosphate forming (EC 2.7.1.6) (from data) compare
CA265_RS23485 +0.4 2.0 hypothetical protein compare
CA265_RS01635 +0.4 2.7 hypothetical protein compare
CA265_RS15945 +0.4 1.0 two-component sensor histidine kinase compare
CA265_RS17565 +0.4 1.2 hypothetical protein compare
CA265_RS12505 +0.4 1.4 hypothetical protein compare
CA265_RS13380 +0.4 0.9 hypothetical protein compare
CA265_RS19710 +0.4 2.7 carbohydrate kinase compare
CA265_RS19470 +0.4 2.1 noncanonical pyrimidine nucleotidase, YjjG family compare
CA265_RS08890 +0.4 2.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA265_RS15935 +0.4 2.4 hypothetical protein compare
CA265_RS10650 +0.4 2.1 hypothetical protein compare
CA265_RS03225 +0.4 2.2 hypothetical protein compare
CA265_RS11975 +0.4 1.5 hypothetical protein compare
CA265_RS17160 +0.4 1.8 peptide-methionine (S)-S-oxide reductase compare
CA265_RS11740 +0.4 1.8 hypothetical protein compare
CA265_RS16945 +0.4 1.0 hypothetical protein compare
CA265_RS01700 +0.4 2.5 hypothetical protein compare
CA265_RS25365 +0.4 2.0 glycerol acyltransferase compare
CA265_RS06865 +0.4 2.1 hypothetical protein compare
CA265_RS22210 +0.4 1.6 hypothetical protein compare
CA265_RS09420 +0.4 0.5 hypothetical protein compare
CA265_RS05355 +0.4 2.8 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS01065 +0.4 1.5 hypothetical protein compare
CA265_RS19630 +0.4 2.1 DNA polymerase I compare
CA265_RS09020 +0.4 1.7 hypothetical protein compare
CA265_RS15615 +0.4 1.3 malate dehydrogenase compare
CA265_RS13695 +0.4 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in carbon source experiments

For carbon source D-Glucose across organisms