Experiment set5IT061 for Bacteroides thetaiotaomicron VPI-5482
aerobic shaking 48 hr copy A
Group: survivalMedia: BHIS
Culturing: Btheta_ML6a, tube, Anaerobic, at 37 (C), shaken=0 rpm
By: Hualan on 12/19/17
Media components: 7.7 g/L Calf brains, 9.8 g/L Beef heart, 10 g/L Proteose Peptone, 5 g/L Sodium Chloride, 2.5 g/L Disodium phosphate, 1 g/L L-Cysteine, 2 g/L Sodium bicarbonate, 0.005 g/L Hemin
Specific Phenotypes
For 8 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Alginate metabolism | 1 |
| Phosphate metabolism | 1 |
| Thioredoxin-disulfide reductase | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Lipopolysaccharide biosynthesis
- Ether lipid metabolism
- Nicotinate and nicotinamide metabolism
- Fructose and mannose metabolism
- Ascorbate and aldarate metabolism
- Fatty acid biosynthesis
- Purine metabolism
- Pyrimidine metabolism
- Lysine degradation
- Histidine metabolism
- Tyrosine metabolism
- Phenylalanine metabolism
- Selenoamino acid metabolism
- Aminosugars metabolism
- Glycerophospholipid metabolism
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Ethylbenzene degradation
- Butanoate metabolism
- Thiamine metabolism
- Riboflavin metabolism
- Limonene and pinene degradation
- Diterpenoid biosynthesis
- Carotenoid biosynthesis - General
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Alkaloid biosynthesis II
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD salvage pathway III (to nicotinamide riboside) | 3 | 2 | 1 |
| UTP and CTP dephosphorylation I | 7 | 5 | 2 |
| purine nucleotides degradation II (aerobic) | 11 | 7 | 3 |
| inosine 5'-phosphate degradation | 4 | 3 | 1 |
| adenosine nucleotides degradation I | 8 | 5 | 2 |
| purine nucleotides degradation I (plants) | 12 | 7 | 3 |
| guanosine nucleotides degradation II | 4 | 2 | 1 |
| guanosine nucleotides degradation III | 4 | 2 | 1 |
| guanosine nucleotides degradation I | 4 | 2 | 1 |
| N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation | 5 | 3 | 1 |
| adenosine nucleotides degradation II | 5 | 2 | 1 |
| superpathway of guanosine nucleotides degradation (plants) | 6 | 3 | 1 |
| superpathway of purines degradation in plants | 18 | 7 | 3 |
| ureide biosynthesis | 7 | 3 | 1 |
| tunicamycin biosynthesis | 9 | 2 | 1 |
| NAD salvage (plants) | 11 | 5 | 1 |