Experiment set5IT060 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 20 mM

200 most important genes:

  gene name fitness t score description  
AO356_16600 -4.3 -2.9 malate:quinone oxidoreductase compare
AO356_02250 -3.8 -9.2 pyridine nucleotide-disulfide oxidoreductase compare
AO356_07005 -3.6 -2.5 ABC transporter ATP-binding protein compare
AO356_09815 -3.4 -7.1 imidazoleglycerol-phosphate dehydratase compare
AO356_18020 -3.3 -4.4 ATP-dependent DNA helicase RuvA compare
AO356_19420 -3.0 -2.9 septum formation inhibitor compare
AO356_06965 -2.9 -9.5 histidinol dehydrogenase compare
AO356_09795 -2.8 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
AO356_20830 -2.8 -4.4 phosphoadenosine phosphosulfate reductase compare
AO356_05670 -2.8 -3.7 recombinase RecA compare
AO356_09520 -2.8 -6.6 phosphoribosyl-AMP cyclohydrolase compare
AO356_04560 -2.7 -3.6 serine peptidase compare
AO356_01745 -2.6 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_08635 -2.6 -10.5 ATP phosphoribosyltransferase regulatory subunit compare
AO356_10185 -2.5 -10.0 glutamate--cysteine ligase compare
AO356_17520 -2.4 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_19090 -2.4 -3.2 phosphoribosylaminoimidazole synthetase compare
AO356_21125 -2.4 -3.9 cyclic peptide transporter compare
AO356_12515 -2.4 -6.0 exodeoxyribonuclease III compare
AO356_02265 -2.3 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_09810 -2.3 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_06995 -2.3 -6.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_04965 -2.2 -1.7 ATP-dependent helicase compare
AO356_01740 -2.1 -3.6 DNA-binding protein compare
AO356_09800 -2.0 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_18755 -2.0 -8.7 succinylglutamate desuccinylase compare
AO356_17070 -2.0 -2.9 cytochrome B compare
AO356_03400 -2.0 -5.4 aminotransferase DegT compare
AO356_06970 -1.9 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_13475 -1.9 -7.3 glutathione synthetase compare
AO356_00880 -1.9 -2.8 integration host factor subunit alpha compare
AO356_15325 -1.9 -2.7 hypothetical protein compare
AO356_22125 -1.9 -6.5 isocitrate dehydrogenase compare
AO356_02460 -1.9 -2.7 hypothetical protein compare
AO356_07915 -1.9 -3.4 exodeoxyribonuclease V subunit beta compare
AO356_08235 -1.8 -8.7 histidine kinase compare
AO356_05640 -1.8 -3.9 LuxR family transcriptional regulator compare
AO356_03350 -1.8 -4.6 glycosyl transferase compare
AO356_01750 -1.8 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO356_03800 -1.7 -1.5 histidine kinase compare
AO356_06990 -1.7 -5.2 toluene tolerance protein compare
AO356_03360 -1.7 -3.0 hypothetical protein compare
AO356_03415 -1.7 -6.9 oxidoreductase compare
AO356_12380 -1.7 -7.4 ATP-dependent DNA helicase RecG compare
AO356_04570 -1.7 -6.2 RNA polymerase subunit sigma compare
AO356_02325 -1.7 -2.3 3-ketoacyl-CoA thiolase compare
AO356_18775 -1.7 -3.6 aspartate kinase compare
AO356_13685 -1.7 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_02290 -1.6 -2.8 TetR family transcriptional regulator compare
AO356_20915 -1.6 -3.8 thiamine pyrophosphate-binding protein compare
AO356_07210 -1.6 -2.3 histidine kinase compare
AO356_10340 -1.6 -9.0 phosphoserine phosphatase compare
AO356_00810 -1.6 -1.7 hypothetical protein compare
AO356_19550 -1.6 -7.1 acireductone dioxygenase compare
AO356_09525 -1.6 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_07000 -1.6 -3.0 ABC transporter permease compare
AO356_18060 -1.6 -7.5 hypothetical protein compare
AO356_18025 -1.6 -2.3 ATP-dependent DNA helicase RuvB compare
AO356_19840 -1.6 -5.1 histidine kinase compare
AO356_02465 -1.5 -2.6 carbonate dehydratase compare
AO356_03405 -1.5 -3.1 serine acetyltransferase compare
AO356_06085 -1.5 -3.4 thiamine biosynthesis protein ThiF compare
AO356_10875 -1.5 -12.2 acetyl-CoA hydrolase conserved
AO356_11315 -1.5 -2.1 shikimate dehydrogenase compare
AO356_29990 -1.5 -2.2 cupin compare
AO356_13505 -1.5 -3.1 chemotaxis protein compare
AO356_06575 -1.5 -2.6 outer membrane protein assembly factor BamB compare
AO356_17950 -1.5 -7.4 histidine kinase compare
AO356_06960 -1.5 -6.5 histidinol-phosphate aminotransferase compare
AO356_27180 -1.5 -4.0 hypothetical protein compare
AO356_17065 -1.5 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_11585 -1.5 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_10170 -1.5 -2.9 chemotaxis protein CheY compare
AO356_25865 -1.5 -1.5 peroxidase compare
AO356_26455 -1.5 -2.4 hypothetical protein compare
AO356_18115 -1.5 -7.0 transporter compare
AO356_19225 -1.5 -7.5 histidine kinase compare
AO356_11270 -1.4 -6.0 potassium transporter peripheral membrane component compare
AO356_12520 -1.4 -2.6 orotate phosphoribosyltransferase compare
AO356_11450 -1.4 -1.9 cytochrome C compare
AO356_17075 -1.4 -2.5 cytochrome C compare
AO356_28685 -1.4 -2.4 betaine-aldehyde dehydrogenase compare
AO356_08645 -1.4 -4.3 hypothetical protein compare
AO356_04885 -1.4 -5.7 multidrug transporter compare
AO356_02485 -1.4 -3.5 transcriptional regulator compare
AO356_20175 -1.3 -1.2 3-oxoacyl-ACP synthase compare
AO356_02190 -1.3 -5.2 hypothetical protein compare
AO356_07910 -1.3 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_04275 -1.3 -1.4 3-oxoacyl-ACP synthase compare
AO356_11420 -1.3 -6.7 histidine kinase compare
AO356_05415 -1.3 -4.7 hypothetical protein compare
AO356_09565 -1.3 -6.0 glucan biosynthesis protein G compare
AO356_28580 -1.2 -2.9 sugar ABC transporter permease compare
AO356_30430 -1.2 -2.4 hypothetical protein compare
AO356_11025 -1.2 -3.8 transcriptional regulator PhoU compare
AO356_24485 -1.2 -2.4 SAM-dependent methyltransferase compare
AO356_06685 -1.2 -1.8 preprotein translocase subunit YajC compare
AO356_08660 -1.2 -6.4 tRNA dimethylallyltransferase compare
AO356_22005 -1.2 -3.6 CopG family transcriptional regulator compare
AO356_15165 -1.2 -2.4 protein cII compare
AO356_26350 -1.2 -1.7 acetyl-CoA acetyltransferase compare
AO356_14940 -1.2 -5.6 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
AO356_02210 -1.2 -2.6 copper-binding protein compare
AO356_22675 -1.2 -1.2 sulfate transporter compare
AO356_03355 -1.2 -2.4 hypothetical protein compare
AO356_13350 -1.1 -9.0 cell division protein FtsX compare
AO356_08640 -1.1 -3.2 membrane protease HflC compare
AO356_16185 -1.1 -3.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_18150 -1.1 -3.6 hypothetical protein compare
AO356_16060 -1.1 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_03500 -1.1 -3.3 3-oxoacyl-ACP reductase compare
AO356_09560 -1.1 -7.9 glucosyltransferase MdoH compare
AO356_24845 -1.1 -1.9 ATPase compare
AO356_04565 -1.1 -6.1 RNA polymerase subunit sigma compare
AO356_07055 -1.1 -2.3 phosphocarrier protein HPr compare
AO356_05850 -1.1 -3.4 hypothetical protein compare
AO356_08875 -1.1 -2.1 toluene tolerance protein compare
AO356_19080 -1.1 -6.5 dehydrogenase compare
AO356_20920 -1.1 -3.6 peptidase compare
AO356_28650 -1.1 -3.4 2-keto-4-pentenoate hydratase compare
AO356_08830 -1.1 -3.8 multidrug DMT transporter compare
AO356_16450 -1.0 -2.2 GTP-binding protein compare
AO356_12725 -1.0 -3.2 recombinase XerC compare
AO356_09095 -1.0 -2.6 hypothetical protein compare
AO356_10565 -1.0 -8.2 channel protein TolC compare
AO356_07050 -1.0 -5.0 glmZ(sRNA)-inactivating NTPase compare
AO356_17890 -1.0 -1.2 H-NS histone compare
AO356_03435 -1.0 -2.4 integration host factor subunit beta compare
AO356_30000 -1.0 -2.4 hypothetical protein compare
AO356_23500 -1.0 -4.5 TetR family transcriptional regulator compare
AO356_29220 -1.0 -1.7 hydroxypyruvate isomerase compare
AO356_05080 -1.0 -1.1 peptide deformylase compare
AO356_03855 -1.0 -7.1 AAA family ATPase compare
AO356_29355 -1.0 -1.2 hypothetical protein compare
AO356_15420 -1.0 -2.6 hypothetical protein compare
AO356_20850 -1.0 -3.2 hypothetical protein compare
AO356_03620 -1.0 -2.8 cytochrome C compare
AO356_00125 -1.0 -1.8 hypothetical protein compare
AO356_25245 -1.0 -2.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO356_03420 -1.0 -4.4 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_16955 -1.0 -4.4 disulfide bond formation protein B compare
AO356_00170 -1.0 -2.4 lytic transglycosylase compare
AO356_11045 -1.0 -6.3 phosphate-binding protein compare
AO356_07385 -1.0 -1.1 tRNA-Thr compare
AO356_18965 -1.0 -3.3 transcriptional regulator compare
AO356_03995 -1.0 -5.6 potassium transporter TrkH compare
AO356_10560 -1.0 -7.4 ABC transporter compare
AO356_28515 -1.0 -1.7 sugar ABC transporter permease compare
AO356_14790 -0.9 -5.2 MFS transporter compare
AO356_17245 -0.9 -5.3 hypothetical protein compare
AO356_10345 -0.9 -3.4 RNA pyrophosphohydrolase compare
AO356_03365 -0.9 -2.2 UDP-N-acetylglucosamine 2-epimerase compare
AO356_21165 -0.9 -5.1 macrolide ABC transporter ATP-binding protein compare
AO356_14285 -0.9 -3.9 glycerol-3-phosphate acyltransferase compare
AO356_06385 -0.9 -2.0 recombinase XerD compare
AO356_22795 -0.9 -1.2 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_10555 -0.9 -6.4 hemolysin secretion protein D compare
AO356_19210 -0.9 -2.1 hypothetical protein compare
AO356_10570 -0.9 -8.2 large adhesive protein compare
AO356_12780 -0.9 -4.1 argininosuccinate lyase compare
AO356_12375 -0.9 -6.1 histidine kinase compare
AO356_26655 -0.9 -1.4 (2Fe-2S)-binding protein compare
AO356_01115 -0.9 -1.0 hypothetical protein compare
AO356_01590 -0.9 -4.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
AO356_27925 -0.9 -1.5 MarR family transcriptional regulator compare
AO356_28845 -0.9 -1.7 ferrichrome ABC transporter compare
AO356_29500 -0.9 -2.7 monooxygenase compare
AO356_08525 -0.9 -4.3 NAD synthetase compare
AO356_17985 -0.9 -3.5 cold-shock protein compare
AO356_08910 -0.9 -2.9 carbamoyltransferase compare
AO356_22150 -0.9 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_26385 -0.9 -3.0 LysR family transcriptional regulator compare
AO356_03270 -0.9 -2.6 terminase compare
AO356_03380 -0.9 -2.8 glycosyl amidation-associated protein WbuZ compare
AO356_14505 -0.8 -1.5 peptidase M23 compare
AO356_09775 -0.8 -4.7 peptidase M23 compare
AO356_04880 -0.8 -6.8 multidrug transporter compare
AO356_10580 -0.8 -5.7 hypothetical protein compare
AO356_22905 -0.8 -3.6 transcriptional regulator compare
AO356_02420 -0.8 -3.3 cytochrome C oxidase Cbb3 compare
AO356_23400 -0.8 -1.2 phosphonate ABC transporter compare
AO356_16980 -0.8 -6.0 protoheme IX farnesyltransferase compare
AO356_23130 -0.8 -2.3 hypothetical protein compare
AO356_19300 -0.8 -6.0 peptidylprolyl isomerase compare
AO356_26285 -0.8 -1.6 sugar ABC transporter substrate-binding protein compare
AO356_08880 -0.8 -3.0 glycosyl transferase compare
AO356_17515 -0.8 -5.1 murein transglycosylase compare
AO356_28575 -0.8 -2.8 ABC transporter permease compare
AO356_12885 -0.8 -4.7 hypothetical protein compare
AO356_16970 -0.8 -5.3 cytochrome o ubiquinol oxidase subunit III compare
AO356_24990 -0.8 -1.0 4-oxalocrotonate tautomerase compare
AO356_08905 -0.8 -0.9 glycosyl transferase compare
AO356_08710 -0.8 -5.4 flagellar motor stator protein MotA compare
AO356_07540 -0.8 -1.3 SsrA-binding protein compare
AO356_12730 -0.8 -2.3 hypothetical protein compare
AO356_11455 -0.8 -2.8 cytochrome compare
AO356_19635 -0.8 -4.1 TetR family transcriptional regulator compare
AO356_08755 -0.8 -1.4 aspartyl protease compare
AO356_29270 -0.8 -1.4 ABC transporter permease compare
AO356_07370 -0.8 -1.7 nicotinate-nucleotide pyrophosphorylase compare


Specific Phenotypes

For 4 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas fluorescens FW300-N2C3

For stress 1-ethyl-3-methylimidazolium acetate across organisms