Experiment set5IT060 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 20 mM

200 most detrimental genes:

  gene name fitness t score description  
AO356_18810 +3.9 15.2 DNA-binding protein compare
AO356_10695 +2.5 17.6 diguanylate cyclase compare
AO356_19045 +2.0 12.4 chemotaxis protein CheY compare
AO356_04575 +1.7 11.4 RNA polymerase subunit sigma compare
AO356_15815 +1.4 2.8 gamma-glutamyl kinase compare
AO356_09185 +1.4 3.3 hypothetical protein compare
AO356_06005 +1.4 5.4 zinc metallopeptidase RseP compare
AO356_28645 +1.3 2.8 AraC family transcriptional regulator compare
AO356_10585 +1.2 8.4 hypothetical protein compare
AO356_00355 +1.2 5.3 chemotaxis protein CheY compare
AO356_29590 +1.1 1.8 ester cyclase compare
AO356_22520 +1.1 3.3 glyoxalase compare
AO356_08975 +1.1 7.2 diguanylate cyclase compare
AO356_19565 +1.1 2.0 hypothetical protein compare
AO356_08400 +1.0 3.7 chaperone modulatory protein CbpM compare
AO356_11340 +1.0 2.1 NADH-flavin reductase compare
AO356_03095 +1.0 6.4 protease HtpX compare
AO356_03215 +1.0 7.4 hypothetical protein compare
AO356_29730 +1.0 1.9 MarR family transcriptional regulator compare
AO356_07020 +0.9 1.4 LPS export ABC transporter periplasmic protein LptC compare
AO356_15460 +0.9 2.8 hypothetical protein compare
AO356_23425 +0.9 4.4 saccharopine dehydrogenase compare
AO356_01545 +0.9 1.6 hypothetical protein compare
AO356_19780 +0.9 6.2 histidine kinase compare
AO356_18805 +0.9 1.8 magnesium transporter compare
AO356_26845 +0.9 3.2 hypothetical protein compare
AO356_04975 +0.9 5.6 RNA polymerase-associated protein RapA compare
AO356_16760 +0.9 4.3 hypothetical protein compare
AO356_01840 +0.9 2.4 uracil permease compare
AO356_19285 +0.9 1.5 tRNA-Asp compare
AO356_22345 +0.9 2.5 potassium transporter KefC compare
AO356_04180 +0.9 2.2 hypothetical protein compare
AO356_29105 +0.8 2.4 fumarylacetoacetate hydrolase compare
AO356_14540 +0.8 1.4 biotin--protein ligase compare
AO356_16655 +0.8 5.0 2-alkenal reductase compare
AO356_06065 +0.8 2.4 ArsC family transcriptional regulator compare
AO356_03200 +0.8 5.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO356_17225 +0.8 5.0 LysR family transcriptional regulator compare
AO356_26360 +0.8 2.0 enoyl-CoA hydratase compare
AO356_23945 +0.8 2.3 hypothetical protein compare
AO356_05755 +0.8 1.8 ArsR family transcriptional regulator compare
AO356_06780 +0.8 2.1 hypothetical protein compare
AO356_16320 +0.8 2.4 hypothetical protein compare
AO356_17345 +0.8 1.5 molybdenum cofactor biosynthesis protein MoaE compare
AO356_03065 +0.8 3.2 AAA family ATPase compare
AO356_25585 +0.8 2.7 2-hydroxymuconic semialdehyde dehydrogenase compare
AO356_07090 +0.7 1.4 hypothetical protein compare
AO356_30265 +0.7 1.9 cupin compare
AO356_11470 +0.7 1.8 hypothetical protein compare
AO356_25565 +0.7 2.0 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
AO356_24305 +0.7 1.9 hypothetical protein compare
AO356_25360 +0.7 1.5 dimethylmenaquinone methyltransferase compare
AO356_26495 +0.7 1.6 hypothetical protein compare
AO356_27635 +0.7 3.6 histidine kinase compare
AO356_28290 +0.7 2.1 LuxR family transcriptional regulator compare
AO356_19015 +0.7 2.7 NAD(P)H-quinone oxidoreductase compare
AO356_13395 +0.7 1.7 non-canonical purine NTP pyrophosphatase compare
AO356_04025 +0.7 1.6 hypothetical protein compare
AO356_00430 +0.7 2.6 twitching motility protein PilT compare
AO356_26220 +0.7 1.3 diguanylate cyclase compare
AO356_14445 +0.7 1.9 lipoate--protein ligase compare
AO356_21455 +0.7 2.2 cell division protein compare
AO356_21475 +0.6 2.7 oxidoreductase compare
AO356_23760 +0.6 2.4 hypothetical protein compare
AO356_15780 +0.6 2.4 peptidylprolyl isomerase compare
AO356_22710 +0.6 2.3 ArsC family transcriptional regulator compare
AO356_24375 +0.6 2.0 type VI secretion protein compare
AO356_24725 +0.6 1.9 alkylhydroperoxidase compare
AO356_18070 +0.6 2.4 7-cyano-7-deazaguanine synthase compare
AO356_03175 +0.6 2.8 transcription elongation factor GreAB compare
AO356_21835 +0.6 1.5 glyoxalase compare
AO356_09305 +0.6 2.2 type II secretory protein pull compare
AO356_20935 +0.6 1.8 antibiotic biosynthesis monooxygenase compare
AO356_06250 +0.6 1.7 chemotaxis protein CheY compare
AO356_21395 +0.6 3.2 LysR family transcriptional regulator compare
AO356_03210 +0.6 1.7 hypothetical protein compare
AO356_12905 +0.6 1.5 amino acid ABC transporter ATP-binding protein compare
AO356_19240 +0.6 1.1 cupin compare
AO356_25170 +0.6 2.0 lipid carrier protein compare
AO356_24550 +0.6 1.5 hypothetical protein compare
AO356_25005 +0.6 2.3 LysR family transcriptional regulator compare
AO356_15860 +0.6 1.5 general secretion pathway protein GspH compare
AO356_04815 +0.6 1.2 hypothetical protein compare
AO356_11410 +0.6 0.6 hypothetical protein compare
AO356_21795 +0.6 1.1 PBS lyase compare
AO356_27735 +0.6 2.7 aspartyl beta-hydroxylase compare
AO356_12485 +0.6 2.1 DNA-directed RNA polymerase subunit omega compare
AO356_15440 +0.6 5.1 histidine kinase compare
AO356_16260 +0.6 3.2 ribosomal-protein-alanine acetyltransferase compare
AO356_00130 +0.6 2.2 XRE family transcriptional regulator compare
AO356_28440 +0.6 1.0 galactose 1-dehydrogenase compare
AO356_29735 +0.6 2.4 hypothetical protein compare
AO356_03205 +0.6 4.0 acetyltransferase compare
AO356_27685 +0.6 2.0 ABC transporter ATP-binding protein compare
AO356_27995 +0.6 0.8 thioredoxin reductase compare
AO356_18730 +0.6 3.0 arginine N-succinyltransferase compare
AO356_17555 +0.6 1.7 GntR family transcriptional regulator compare
AO356_01515 +0.6 2.1 N-formylglutamate amidohydrolase compare
AO356_22920 +0.6 1.7 nicotinamidase compare
AO356_26815 +0.6 2.2 short-chain dehydrogenase compare
AO356_09425 +0.6 3.2 malate dehydrogenase compare
AO356_15160 +0.6 1.1 hypothetical protein compare
AO356_21790 +0.6 1.5 sulfonate ABC transporter ATP-binding protein compare
AO356_22650 +0.5 0.9 chemotaxis protein CheD compare
AO356_15665 +0.5 1.2 large-conductance mechanosensitive channel compare
AO356_25255 +0.5 1.7 FTR1 family iron permease compare
AO356_25450 +0.5 1.6 LysR family transcriptional regulator compare
AO356_20940 +0.5 1.3 hypothetical protein compare
AO356_22870 +0.5 1.8 glycerate kinase compare
AO356_19790 +0.5 4.7 TonB-dependent receptor compare
AO356_07190 +0.5 1.8 hypothetical protein compare
AO356_06940 +0.5 1.6 16S rRNA methyltransferase compare
AO356_28635 +0.5 2.2 ABC transporter substrate-binding protein compare
AO356_28330 +0.5 1.7 secretion protein HlyD compare
AO356_24900 +0.5 1.9 damage-inducible protein DinB compare
AO356_05230 +0.5 1.1 RNA polymerase subunit sigma-24 compare
AO356_05035 +0.5 1.7 GNAT family acetyltransferase compare
AO356_22775 +0.5 1.7 hypothetical protein compare
AO356_04525 +0.5 2.5 hypothetical protein compare
AO356_03020 +0.5 1.6 ammonium transporter compare
AO356_03285 +0.5 1.6 hypothetical protein compare
AO356_25110 +0.5 1.3 protein DnrP compare
AO356_17955 +0.5 2.4 2-dehydropantoate 2-reductase compare
AO356_26730 +0.5 1.5 cupin compare
AO356_02275 +0.5 2.2 hypothetical protein compare
AO356_26205 +0.5 1.5 nitrite reductase compare
AO356_01510 +0.5 2.3 glutamine synthetase compare
AO356_23645 +0.5 1.1 hypothetical protein compare
AO356_13050 +0.5 1.9 hypothetical protein compare
AO356_13590 +0.5 3.4 DEAD/DEAH box helicase compare
AO356_21020 +0.5 2.0 hypothetical protein compare
AO356_04645 +0.5 2.0 lipid kinase compare
AO356_02530 +0.5 3.3 hypothetical protein compare
AO356_11415 +0.5 3.3 chemotaxis protein CheY compare
AO356_03685 +0.5 2.6 chemotaxis protein CheW compare
AO356_12735 +0.5 0.9 diaminopimelate epimerase compare
AO356_02905 +0.5 3.4 amino acid ABC transporter substrate-binding protein compare
AO356_15970 +0.5 1.5 50s ribosomal protein l13 compare
AO356_27875 +0.5 1.2 ketosteroid isomerase compare
AO356_03190 +0.5 2.3 5'-nucleotidase compare
AO356_01170 +0.5 1.0 glycosyl transferase family 1 compare
AO356_03225 +0.5 2.5 esterase compare
AO356_27665 +0.5 1.6 AraC family transcriptional regulator compare
AO356_06445 +0.5 1.9 tRNA (cmo5U34)-methyltransferase compare
AO356_26715 +0.5 2.5 4-aminobutyrate aminotransferase compare
AO356_20550 +0.5 1.8 phage tail protein compare
AO356_03075 +0.5 1.5 MarR family transcriptional regulator compare
AO356_12605 +0.5 3.1 FAD-dependent oxidoreductase compare
AO356_16820 +0.5 0.8 IclR family transcriptional regulator compare
AO356_26410 +0.5 1.6 methyltransferase type 12 compare
AO356_06060 +0.5 3.2 sodium:proton antiporter compare
AO356_19405 +0.5 1.6 pseudouridine synthase compare
AO356_20570 +0.5 1.6 baseplate assembly protein compare
AO356_24745 +0.5 1.4 iron dicitrate transport regulator FecR compare
AO356_18605 +0.5 1.3 XRE family transcriptional regulator compare
AO356_02445 +0.5 1.4 prevent-host-death protein compare
AO356_10445 +0.5 0.5 serine protease compare
AO356_27765 +0.5 1.1 hypothetical protein compare
AO356_04445 +0.5 1.1 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_21380 +0.5 2.2 tRNA-dihydrouridine synthase C compare
AO356_06545 +0.5 2.0 peptidase M23 compare
AO356_03100 +0.5 2.1 thiopurine S-methyltransferase compare
AO356_09850 +0.5 1.3 hypothetical protein compare
AO356_29415 +0.5 1.9 transketolase compare
AO356_28570 +0.4 2.6 ABC transporter substrate-binding protein compare
AO356_29420 +0.4 1.3 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_22450 +0.4 2.1 hypothetical protein compare
AO356_21405 +0.4 1.0 3-isopropylmalate dehydratase compare
AO356_03885 +0.4 2.9 beta-ketoacyl-ACP synthase compare
AO356_08385 +0.4 1.2 urease subunit beta compare
AO356_06510 +0.4 1.8 TetR family transcriptional regulator compare
AO356_29165 +0.4 1.5 glyoxalase compare
AO356_12435 +0.4 2.2 hypothetical protein compare
AO356_29035 +0.4 1.3 multidrug transporter CflA compare
AO356_21080 +0.4 1.1 sugar dehydrogenase compare
AO356_22405 +0.4 1.1 hypothetical protein compare
AO356_18885 +0.4 2.6 pilus assembly protein PilZ compare
AO356_23250 +0.4 1.2 hypothetical protein compare
AO356_06170 +0.4 2.1 hypothetical protein compare
AO356_26875 +0.4 1.2 alcohol dehydrogenase compare
AO356_10075 +0.4 2.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_22815 +0.4 1.2 lactoylglutathione lyase compare
AO356_18690 +0.4 2.2 hypothetical protein compare
AO356_16685 +0.4 2.1 pressure-regulated protein compare
AO356_08130 +0.4 1.4 pyrophosphatase compare
AO356_26735 +0.4 0.9 tartrate dehydrogenase compare
AO356_00270 +0.4 0.8 hypothetical protein compare
AO356_28825 +0.4 1.2 histidine kinase compare
AO356_22885 +0.4 2.1 hypothetical protein compare
AO356_29755 +0.4 1.1 hypothetical protein compare
AO356_28610 +0.4 0.8 AraC family transcriptional regulator compare
AO356_12660 +0.4 1.5 diguanylate cyclase compare
AO356_23695 +0.4 2.3 sulfonate ABC transporter substrate-binding protein compare
AO356_16840 +0.4 1.7 hypothetical protein compare
AO356_09325 +0.4 1.1 type II secretion system protein GspH compare
AO356_25560 +0.4 1.3 2-keto-3-deoxy-L-rhamnonate aldolase compare
AO356_30010 +0.4 1.0 transcriptional regulator compare
AO356_03185 +0.4 2.3 universal stress protein UspA compare
AO356_01500 +0.4 1.7 RpiR family transcriptional regulator compare
AO356_24965 +0.4 0.9 GntR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas fluorescens FW300-N2C3

For stress 1-ethyl-3-methylimidazolium acetate across organisms