Experiment set5IT060 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Lima bean

200 most important genes:

  gene name fitness t score description  
Psyr_4270 -5.0 -5.9 serine hydroxymethyltransferase compare
Psyr_1269 -4.1 -2.8 phosphoribosylformylglycinamidine synthase compare
Psyr_0531 -4.1 -2.8 LmbE-like protein compare
Psyr_0034 -4.0 -3.9 tryptophan synthase, beta chain compare
Psyr_0033 -4.0 -4.7 tryptophan synthase, alpha chain compare
Psyr_1350 -3.9 -3.8 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0378 -3.8 -10.1 Glycosyl transferase, family 2 compare
Psyr_0377 -3.8 -9.2 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4991 -3.7 -2.6 hypothetical protein compare
Psyr_1985 -3.7 -10.6 3-isopropylmalate dehydrogenase compare
Psyr_1410 -3.6 -3.5 Holliday junction DNA helicase RuvB compare
Psyr_1663 -3.5 -5.8 phosphoribosylanthranilate isomerase compare
Psyr_1408 -3.5 -2.4 Holliday junction endonuclease RuvC compare
Psyr_4609 -3.5 -16.0 anthranilate synthase, component I compare
Psyr_0826 -3.5 -5.8 glucose-6-phosphate isomerase compare
Psyr_4852 -3.5 -10.2 D-3-phosphoglycerate dehydrogenase compare
Psyr_0915 -3.5 -11.7 NAD-dependent epimerase/dehydratase compare
Psyr_0918 -3.4 -11.2 ABC transporter compare
Psyr_0219 -3.4 -10.4 phosphomannomutase compare
Psyr_4407 -3.3 -3.2 phosphoribosylamine--glycine ligase compare
Psyr_0473 -3.3 -6.8 Methionine biosynthesis MetW compare
Psyr_4581 -3.2 -2.5 anthranilate synthase, component II compare
Psyr_0917 -3.2 -7.1 ABC-2 compare
Psyr_1614 -3.2 -4.7 lipid A biosynthesis acyltransferase compare
Psyr_0923 -3.2 -6.3 hypothetical protein compare
Psyr_1983 -3.1 -6.7 3-isopropylmalate dehydratase, large subunit compare
Psyr_0529 -3.0 -4.5 Glycosyl transferase, group 1 compare
Psyr_3008 -3.0 -6.5 Undecaprenyl-diphosphatase compare
Psyr_1748 -3.0 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0532 -2.9 -5.5 conserved hypothetical protein compare
Psyr_1668 -2.9 -7.8 amidophosphoribosyltransferase compare
Psyr_1669 -2.9 -10.2 O-succinylhomoserine sulfhydrylase compare
Psyr_1613 -2.9 -5.0 septum site-determining protein MinC compare
Psyr_1056 -2.8 -3.7 Poly(beta-D-mannuronate) lyase compare
Psyr_1373 -2.8 -1.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3179 -2.7 -4.0 DNA translocase FtsK compare
Psyr_3193 -2.7 -3.0 Transcription factor jumonji, jmjC compare
Psyr_4130 -2.6 -10.6 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_4018 -2.6 -8.8 Formyltetrahydrofolate deformylase compare
Psyr_0557 -2.6 -6.0 phosphoserine phosphatase compare
Psyr_4369 -2.6 -6.1 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4408 -2.6 -7.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4893 -2.5 -2.5 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0474 -2.5 -7.5 homoserine O-acetyltransferase compare
Psyr_1401 -2.5 -6.7 Histidine triad (HIT) protein compare
Psyr_4580 -2.5 -4.3 anthranilate phosphoribosyltransferase compare
Psyr_4686 -2.5 -6.2 8-amino-7-oxononanoate synthase compare
Psyr_0919 -2.5 -12.8 Chromosome segregation ATPase-like protein compare
Psyr_4683 -2.4 -4.6 dethiobiotin synthase compare
Psyr_3958 -2.4 -9.1 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_0674 -2.4 -3.4 Protein of unknown function UPF0029 compare
Psyr_1984 -2.4 -3.6 3-isopropylmalate dehydratase, small subunit compare
Psyr_4417 -2.4 -2.7 Ferredoxin--nitrite reductase compare
Psyr_1378 -2.4 -3.4 RecA protein compare
Psyr_0704 -2.4 -7.6 glutamate 5-kinase compare
Psyr_0259 -2.4 -4.6 Osmolarity sensor protein envZ compare
Psyr_0916 -2.3 -10.1 GDP-mannose 4,6-dehydratase compare
Psyr_0936 -2.3 -10.3 Glycosyl transferase, group 1 compare
Psyr_3933 -2.3 -3.7 conserved hypothetical protein compare
Psyr_4362 -2.3 -3.3 Rare lipoprotein A compare
Psyr_0623 -2.3 -3.7 Peptidase S24, S26A and S26B compare
Psyr_0014 -2.2 -3.7 lipid A biosynthesis acyltransferase compare
Psyr_0914 -2.2 -10.0 Glycosyl transferase, group 1 compare
Psyr_4687 -2.2 -7.3 biotin synthase compare
Psyr_3637 -2.1 -12.0 Glycosyl transferase, family 4 compare
Psyr_3554 -2.1 -1.6 Carbon storage regulator compare
Psyr_1054 -2.0 -5.3 alginate biosynthesis protein AlgJ compare
Psyr_3146 -2.0 -2.7 general secretion pathway protein J, putative compare
Psyr_5133 -2.0 -4.8 tRNA modification GTPase trmE compare
Psyr_0920 -2.0 -13.3 Glycosyl transferase, group 1 compare
Psyr_3199 -2.0 -3.7 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0469 -1.9 -8.2 dihydroxyacid dehydratase compare
Psyr_1544 -1.9 -3.3 SirA-like protein compare
Psyr_4194 -1.9 -4.8 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3755 -1.9 -2.2 conserved hypothetical protein compare
Psyr_0167 -1.9 -2.9 hypothetical protein compare
Psyr_1914 -1.9 -8.1 transaldolase compare
Psyr_1055 -1.8 -11.3 Membrane bound O-acyl transferase, MBOAT compare
Psyr_0383 -1.8 -1.7 Twin-arginine translocation protein TatB compare
Psyr_4151 -1.8 -1.2 Phosphocarrier HPr protein compare
Psyr_0025 -1.8 -3.6 shikimate dehydrogenase compare
Psyr_3673 -1.8 -1.9 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_1779 -1.8 -2.1 hypothetical protein compare
Psyr_0847 -1.8 -4.6 acetolactate synthase, small subunit compare
Psyr_2077 -1.8 -4.6 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0534 -1.8 -9.4 membrane protein, putative compare
Psyr_0478 -1.8 -8.5 pilus retraction ATPase PilT compare
Psyr_3013 -1.7 -1.8 magnesium chelatase subunit ChlD compare
Psyr_4860 -1.7 -1.4 Integrase, catalytic region compare
Psyr_0848 -1.7 -7.8 ketol-acid reductoisomerase compare
Psyr_4897 -1.7 -2.6 imidazoleglycerol-phosphate dehydratase compare
Psyr_2461 -1.7 -3.1 Uncharacterized conserved protein UCP030820 compare
Psyr_0528 -1.7 -2.6 Carbamoyltransferase compare
Psyr_4896 -1.7 -4.5 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4898 -1.6 -7.7 aromatic amino acid aminotransferase apoenzyme compare
Psyr_1395 -1.6 -4.2 virulence compare
Psyr_0202 -1.6 -5.6 transcriptional regulator, LysR family compare
Psyr_4008 -1.6 -10.6 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_0822 -1.6 -1.6 1-phosphofructokinase compare
Psyr_4842 -1.6 -5.4 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_1058 -1.6 -6.4 Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis compare
Psyr_4100 -1.6 -4.4 D-alanine--D-alanine ligase compare
Psyr_4007 -1.5 -7.3 Secretion protein HlyD compare
Psyr_1097 -1.5 -1.8 glycine cleavage system H protein compare
Psyr_2757 -1.5 -2.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3337 -1.5 -3.0 gluconate kinase, SKI family compare
Psyr_2980 -1.5 -2.8 UDP-glucose pyrophosphorylase compare
Psyr_1402 -1.5 -2.8 SlyX compare
Psyr_0579 -1.5 -7.7 RNAse R compare
Psyr_4019 -1.5 -4.2 H-NS family protein MvaT compare
Psyr_4203 -1.5 -1.9 SsrA-binding protein compare
Psyr_3198 -1.5 -2.1 NADH dehydrogenase subunit B compare
Psyr_1418 -1.5 -2.7 Radical SAM compare
Psyr_3287 -1.5 -1.7 DNA topoisomerase I compare
Psyr_0846 -1.5 -7.0 acetolactate synthase, large subunit compare
Psyr_RNA28 -1.5 -1.8 tRNA-Val compare
Psyr_2317 -1.5 -3.1 CDS compare
Psyr_4009 -1.5 -4.9 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2573 -1.5 -2.5 transcriptional regulator, DeoR family compare
Psyr_0386 -1.4 -4.6 phosphoribosyl-AMP cyclohydrolase compare
Psyr_4567 -1.4 -4.4 Protein of unknown function UPF0075 compare
Psyr_3848 -1.4 -3.3 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein compare
Psyr_3691 -1.4 -5.4 conserved hypothetical protein compare
Psyr_1257 -1.4 -5.6 2-isopropylmalate synthase compare
Psyr_0830 -1.4 -4.6 Poly(A) polymerase compare
Psyr_4138 -1.4 -3.6 Toluene tolerance compare
Psyr_3636 -1.4 -7.7 Polysaccharide biosynthesis protein CapD compare
Psyr_4418 -1.4 -1.8 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_3684 -1.4 -1.2 NLP/P60 compare
Psyr_2613 -1.4 -5.0 Cyclic peptide transporter compare
Psyr_4132 -1.4 -6.4 histidinol phosphate aminotransferase apoenzyme compare
Psyr_1417 -1.4 -4.3 TPR repeat protein compare
Psyr_1121 -1.4 -1.4 6-phosphogluconolactonase compare
Psyr_1396 -1.4 -7.7 Protein of unknown function DUF470:Protein of unknown function DUF471:Protein of unknown function DUF472 compare
Psyr_1719 -1.4 -2.6 conserved hypothetical protein compare
Psyr_1251 -1.3 -3.5 quinoprotein compare
Psyr_2733 -1.3 -2.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_4788 -1.3 -1.7 lipoprotein, putative compare
Psyr_4627 -1.3 -1.2 dimethyladenosine transferase compare
Psyr_1061 -1.3 -4.1 alginate biosynthesis protein Alg44 compare
Psyr_1060 -1.3 -5.8 Sel1-like repeat protein compare
Psyr_0811 -1.3 -4.5 Integral membrane protein TerC compare
Psyr_4051 -1.3 -1.4 transcriptional regulator, ArsR family compare
Psyr_4126 -1.3 -7.7 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_2095 -1.3 -3.7 Conserved TM helix compare
Psyr_1633 -1.3 -1.5 MotA/TolQ/ExbB proton channel compare
Psyr_1053 -1.3 -4.3 alginate biosynthesis protein AlgF compare
Psyr_2829 -1.3 -2.8 conserved hypothetical protein compare
Psyr_3152 -1.3 -0.9 hypothetical protein compare
Psyr_0680 -1.3 -2.9 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_2897 -1.3 -4.6 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3826 -1.3 -2.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_2804 -1.3 -3.0 hypothetical protein compare
Psyr_4843 -1.2 -2.9 NUDIX hydrolase compare
Psyr_4070 -1.2 -3.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2115 -1.2 -2.6 Response regulator receiver compare
Psyr_4161 -1.2 -2.1 Rod shape-determining protein MreD compare
Psyr_4684 -1.2 -1.8 biotin synthesis protein BioC compare
Psyr_3432 -1.2 -2.3 MotA/TolQ/ExbB proton channel compare
Psyr_4566 -1.2 -6.4 Peptidase M23B compare
Psyr_3611 -1.2 -3.1 Protein of unknown function DUF815 compare
Psyr_0576 -1.2 -2.5 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_3567 -1.2 -1.8 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_3473 -1.2 -1.8 Flagellar P-ring protein compare
Psyr_4134 -1.2 -5.1 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0951 -1.2 -2.3 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_2474 -1.2 -2.5 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_2562 -1.2 -1.7 hypothetical protein compare
Psyr_4158 -1.2 -6.0 conserved hypothetical protein compare
Psyr_3620 -1.2 -1.7 hypothetical protein compare
Psyr_2251 -1.2 -1.6 Phosphonate metabolism PhnG compare
Psyr_5053 -1.2 -4.2 asparaginase compare
Psyr_3174 -1.2 -3.0 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_1747 -1.1 -3.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_3459 -1.1 -2.1 Helix-turn-helix, Fis-type compare
Psyr_2118 -1.1 -2.2 protein of unknown function DUF883 compare
Psyr_3055 -1.1 -2.4 Aminoglycoside phosphotransferase compare
Psyr_1780 -1.1 -1.7 transcriptional regulator, TetR family compare
Psyr_4133 -1.1 -6.5 histidinol dehydrogenase compare
Psyr_1057 -1.1 -4.5 alginate biosynthesis protein AlgX compare
Psyr_5130 -1.1 -5.1 chromosome segregation ATPase compare
Psyr_3796 -1.1 -2.1 transcriptional regulator, LysR family compare
Psyr_5065 -1.1 -5.0 ATP-dependent DNA helicase UvrD compare
Psyr_1062 -1.1 -6.4 alginate biosynthesis protein Alg8 compare
Psyr_1616 -1.1 -1.7 Rieske [2Fe-2S] region compare
Psyr_4420 -1.1 -3.0 precorrin-6A reductase compare
Psyr_4128 -1.1 -4.7 sulfate adenylyltransferase subunit 2 compare
Psyr_3555 -1.1 -1.4 aspartate kinase compare
Psyr_3051 -1.1 -2.7 transcriptional regulator, LysR family compare
Psyr_3476 -1.1 -2.3 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_4894 -1.1 -4.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_3093 -1.1 -2.8 conserved hypothetical protein compare
Psyr_1372 -1.1 -2.4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_4341 -1.1 -4.2 thiamine-phosphate diphosphorylase compare
Psyr_0976 -1.1 -2.6 Malate:quinone-oxidoreductase compare
Psyr_2312 -1.0 -1.1 Protein of unknown function DUF24 compare
Psyr_1856 -1.0 -2.2 acireductone dioxygenase apoprotein compare
Psyr_5071 -1.0 -3.6 conserved hypothetical protein compare
Psyr_4464 -1.0 -0.9 lipoprotein, putative compare
Psyr_0983 -1.0 -3.7 Protein of unknown function DUF159 compare


Specific Phenotypes

For 4 genes in this experiment