Experiment set5IT060 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Lima bean

200 most detrimental genes:

  gene name fitness t score description  
Psyr_1796 +1.4 3.3 GCN5-related N-acetyltransferase compare
Psyr_4224 +1.2 1.3 conserved hypothetical protein compare
Psyr_0487 +1.2 2.9 glutathione synthase compare
Psyr_3357 +1.2 2.2 transcriptional regulator, LysR family compare
Psyr_3739 +1.1 1.8 conserved hypothetical protein compare
Psyr_1187 +1.1 3.2 type III chaperone protein ShcE compare
Psyr_2572 +1.1 2.0 ribose-5-phosphate isomerase compare
Psyr_1946 +1.1 1.5 diaminobutyrate aminotransferase apoenzyme compare
Psyr_3808 +1.1 1.0 hypothetical protein compare
Psyr_0137 +1.1 1.8 outer membrane transport energization protein ExbD compare
Psyr_3020 +1.0 1.1 precorrin-4 C11-methyltransferase compare
Psyr_2879 +1.0 1.9 VirK compare
Psyr_2487 +1.0 2.4 Short-chain dehydrogenase/reductase SDR compare
Psyr_4460 +1.0 1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_4169 +1.0 2.9 4-carboxymuconolactone decarboxylase compare
Psyr_2059 +0.9 3.2 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_2543 +0.9 1.2 conserved hypothetical protein compare
Psyr_4480 +0.9 1.2 outer membrane transport energization protein TonB compare
Psyr_2151 +0.9 1.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_2456 +0.9 2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_0833 +0.9 3.0 conserved hypothetical protein compare
Psyr_0179 +0.9 2.9 Protein of unknown function DUF1289 compare
Psyr_3315 +0.9 1.2 conserved hypothetical protein compare
Psyr_3806 +0.9 2.6 hypothetical protein compare
Psyr_2557 +0.9 2.1 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_0493 +0.9 2.0 CheW-like protein compare
Psyr_2031 +0.9 2.1 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2264 +0.9 1.0 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3667 +0.9 1.8 conserved hypothetical protein compare
Psyr_2563 +0.9 1.6 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_2894 +0.9 1.0 conserved hypothetical protein compare
Psyr_3751 +0.9 2.2 Carbon storage regulator compare
Psyr_0772 +0.9 2.7 Protein of unknown function DUF1355 compare
Psyr_0954 +0.8 1.5 Protein of unknown function UPF0153 compare
Psyr_3932 +0.8 1.5 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_1270 +0.8 1.5 conserved hypothetical protein compare
Psyr_2190 +0.8 1.5 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1039 +0.8 1.8 FecR protein compare
Psyr_0735 +0.8 1.4 Peptidase S24, S26A and S26B compare
Psyr_1447 +0.8 2.0 conserved hypothetical protein compare
Psyr_1247 +0.8 1.7 conserved hypothetical protein compare
Psyr_3604 +0.8 2.6 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_2348 +0.8 2.0 hypothetical protein compare
Psyr_4363 +0.8 2.5 membrane-bound lytic murein transglycosylase B compare
Psyr_2213 +0.8 1.9 transcriptional regulator, AraC family compare
Psyr_3625 +0.8 2.4 Protein of unknown function DUF81 compare
Psyr_3462 +0.8 1.5 conserved hypothetical protein compare
Psyr_2269 +0.8 2.3 GTP cyclohydrolase I compare
Psyr_3007 +0.8 1.3 Protein of unknown function DUF1294 compare
Psyr_2386 +0.8 1.3 hypothetical protein compare
Psyr_1992 +0.8 1.9 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_1154 +0.8 1.5 Copper/Zinc superoxide dismutase compare
Psyr_1688 +0.8 1.2 Protein of unknown function DUF1315 compare
Psyr_3974 +0.7 2.0 ABC transporter compare
Psyr_2128 +0.7 2.3 Protein of unknown function DUF6 compare
Psyr_3458 +0.7 1.3 Flagellar hook-basal body complex protein FliE compare
Psyr_2797 +0.7 3.5 hypothetical protein compare
Psyr_1576 +0.7 1.5 Glutamine amidotransferase, class-II compare
Psyr_4880 +0.7 3.4 conserved hypothetical protein compare
Psyr_3023 +0.7 1.9 conserved hypothetical protein compare
Psyr_1236 +0.7 1.7 transcriptional regulator, BadM/Rrf2 family compare
Psyr_2925 +0.7 1.3 Helix-turn-helix motif protein compare
Psyr_0405 +0.7 2.6 Pilus assembly protein, PilO compare
Psyr_2196 +0.7 1.2 Urease accessory protein UreG compare
Psyr_4995 +0.7 1.7 RHS protein compare
Psyr_1936 +0.7 2.4 tRNA-U16,U17-dihydrouridine synthase compare
Psyr_1158 +0.7 1.2 Gluconate transporter compare
Psyr_3425 +0.7 1.5 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_3701 +0.7 1.8 thioredoxin, putative compare
Psyr_1795 +0.7 2.2 Taurine dioxygenase compare
Psyr_3062 +0.7 3.2 transcriptional regulator, LysR family compare
Psyr_0447 +0.7 1.6 malonate decarboxylase subunit, putative compare
Psyr_2581 +0.7 2.6 FecR protein compare
Psyr_3661 +0.7 1.5 Fumarate hydratase, class II compare
Psyr_0642 +0.7 2.2 conserved hypothetical protein compare
Psyr_1190 +0.7 1.1 type III transcriptional regulator HrpR compare
Psyr_2300 +0.7 2.6 Conserved hypothetical protein 374 compare
Psyr_0392 +0.7 2.9 hypothetical protein compare
Psyr_3228 +0.7 2.0 Glycosyl transferase, group 1 compare
Psyr_3837 +0.6 1.4 conserved hypothetical protein compare
Psyr_2779 +0.6 1.3 Phage minor tail compare
Psyr_2273 +0.6 3.2 L-glutamine synthetase compare
Psyr_3518 +0.6 2.4 hypothetical protein compare
Psyr_1594 +0.6 1.9 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type compare
Psyr_2771 +0.6 3.2 conserved domain protein compare
Psyr_0479 +0.6 2.0 NLP/P60 compare
Psyr_2280 +0.6 1.2 Alkanesulfonate monooxygenase compare
Psyr_3399 +0.6 1.5 Endoribonuclease L-PSP compare
Psyr_4382 +0.6 2.4 Uncharacterized protein conserved in bacteria-like protein compare
Psyr_0373 +0.6 1.0 CDS compare
Psyr_3395 +0.6 1.7 FlhB domain protein compare
Psyr_2117 +0.6 1.0 conserved hypothetical protein compare
Psyr_3900 +0.6 0.9 conserved hypothetical protein compare
Psyr_2544 +0.6 2.0 Alkylhydroperoxidase AhpD core:Uncharacterized peroxidase-related protein compare
Psyr_2774 +0.6 1.9 Bacteriophage lambda tail assembly I compare
Psyr_0437 +0.6 1.1 acyl carrier protein, putative compare
Psyr_1725 +0.6 1.1 Protein of unknown function DUF204 compare
Psyr_0440 +0.6 2.4 Cobyrinic acid a,c-diamide synthase compare
Psyr_2604 +0.6 2.5 conserved hypothetical protein; putative membrane protein compare
Psyr_4588 +0.6 1.6 Phage GP46 compare
Psyr_2579 +0.6 2.3 Aldehyde dehydrogenase compare
Psyr_4275 +0.6 2.5 DNA replication and repair protein RadA compare
Psyr_1832 +0.6 1.9 Exonuclease compare
Psyr_2983 +0.6 2.2 conserved domain protein compare
Psyr_1489 +0.6 1.6 hypothetical protein compare
Psyr_1162 +0.6 1.4 conserved hypothetical protein compare
Psyr_2180 +0.6 1.5 transcriptional regulator, LysR family compare
Psyr_2786 +0.6 1.4 phage-related conserved hypothetical protein compare
Psyr_3778 +0.6 2.3 Substrate-binding region of ABC-type glycine betaine transport system compare
Psyr_4045 +0.6 2.7 YceI compare
Psyr_2827 +0.6 2.4 phage-related protein compare
Psyr_2881 +0.6 2.5 xylellain, Cysteine peptidase, MEROPS family C01A compare
Psyr_1304 +0.6 1.4 CheW-like protein compare
Psyr_1431 +0.6 2.9 hypothetical protein compare
Psyr_0284 +0.6 2.7 Electron transport protein SCO1/SenC compare
Psyr_1933 +0.6 1.8 hypothetical protein compare
Psyr_1600 +0.6 2.3 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_4039 +0.6 1.8 Protein of unknown function DUF796 compare
Psyr_4838 +0.6 1.1 transcriptional regulator, MerR family compare
Psyr_3789 +0.6 1.4 lipoprotein, putative compare
Psyr_3793 +0.6 1.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3374 +0.6 1.7 Heavy metal response regulator compare
Psyr_3234 +0.6 2.2 Lysine exporter protein (LYSE/YGGA) compare
Psyr_2374 +0.6 3.1 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2985 +0.6 1.7 DNA-N1-methyladenine dioxygenase compare
Psyr_0500 +0.5 1.9 biotin carboxyl carrier protein / biotin carboxylase compare
Psyr_4077 +0.5 1.6 Methylated-DNA-[protein]-cysteine S-methyltransferase compare
Psyr_2189 +0.5 2.5 transcriptional regulator, ArsR family compare
Psyr_1596 +0.5 1.2 Helix-turn-helix motif protein compare
Psyr_0416 +0.5 2.6 transcriptional regulator, RpiR family compare
Psyr_3624 +0.5 1.7 transcriptional regulator, LysR family compare
Psyr_4774 +0.5 0.7 Hypothetical protein compare
Psyr_0784 +0.5 1.3 CheW-like protein compare
Psyr_1975 +0.5 1.7 Integrase, catalytic region compare
Psyr_2723 +0.5 1.9 transcriptional regulator, LysR family compare
Psyr_4621 +0.5 2.1 Heat shock protein DnaJ, N-terminal compare
Psyr_4288 +0.5 3.1 protein of unknown function DUF894:Bacterial protein of unknown function DUF894 compare
Psyr_1880 +0.5 1.9 Cytochrome c, class I compare
Psyr_2535 +0.5 2.1 GGDEF domain protein compare
Psyr_3241 +0.5 1.2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_1753 +0.5 2.3 conserved hypothetical protein compare
Psyr_4605 +0.5 1.5 transcriptional regulator PrtN, putative compare
Psyr_0041 +0.5 1.2 Protein of unknown function DUF1161 compare
Psyr_3321 +0.5 1.8 transcriptional regulator, LysR family compare
Psyr_3260 +0.5 2.6 conserved domain protein compare
Psyr_1074 +0.5 2.5 amino acid ABC transporter membrane protein 2, PAAT family compare
Psyr_2770 +0.5 2.7 tail fiber domain protein compare
Psyr_1924 +0.5 1.7 hypothetical protein compare
Psyr_0217 +0.5 2.3 conserved hypothetical protein compare
Psyr_2236 +0.5 2.2 Protein of unknown function DUF1206 compare
Psyr_4088 +0.5 2.0 ketopantoate reductase compare
Psyr_2999 +0.5 1.6 LmbE-like protein compare
Psyr_3125 +0.5 1.2 Nicotinamidase compare
Psyr_0886 +0.5 1.5 Response regulator receiver compare
Psyr_1225 +0.5 1.0 hypothetical protein compare
Psyr_2140 +0.5 1.4 conserved hypothetical protein compare
Psyr_0037 +0.5 0.8 Protein of unknown function DUF1458 compare
Psyr_3161 +0.5 2.7 Type I secretion system ATPase, PrtD compare
Psyr_2820 +0.5 1.3 RecT protein compare
Psyr_2883 +0.5 2.4 D-xylose isomerase compare
Psyr_4389 +0.5 1.8 Flp/Fap pilin component compare
Psyr_3226 +0.5 1.5 Transcriptional activator RfaH compare
Psyr_1188 +0.5 3.7 type III effector protein AvrE1 compare
Psyr_1717 +0.5 1.2 TPR repeat:von Willebrand factor, type A compare
Psyr_2121 +0.5 1.4 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0896 +0.5 1.1 Aldose 1-epimerase compare
Psyr_0445 +0.5 1.3 malonate decarboxylase, beta subunit compare
Psyr_3461 +0.5 3.0 Helix-turn-helix, Fis-type compare
Psyr_1965 +0.5 2.0 Twin-arginine translocation pathway signal compare
Psyr_1008 +0.5 0.6 conserved hypothetical protein compare
Psyr_4122 +0.5 2.3 AFG1-like ATPase compare
Psyr_3614 +0.5 1.7 Protein of unknown function DUF25 compare
Psyr_2232 +0.5 1.3 Major facilitator superfamily compare
Psyr_1338 +0.5 2.2 Hypothetical protein compare
Psyr_3596 +0.5 1.1 Selenoprotein W-related protein compare
Psyr_2052 +0.5 1.8 lipoprotein, putative compare
Psyr_0099 +0.5 1.2 Conserved hypothetical protein compare
Psyr_1368 +0.5 1.9 Carboxylesterase compare
Psyr_1028 +0.5 1.8 conserved hypothetical protein compare
Psyr_3041 +0.5 2.5 Bacillolysin compare
Psyr_2824 +0.5 1.8 conserved hypothetical protein compare
Psyr_1377 +0.5 1.1 CinA, C-terminal compare
Psyr_3594 +0.5 1.4 membrane protein-like protein compare
Psyr_1650 +0.5 1.4 aminodeoxychorismate lyase apoprotein compare
Psyr_2239 +0.5 2.3 DNA/RNA non-specific endonuclease compare
Psyr_0250 +0.5 1.6 conserved hypothetical protein compare
Psyr_4717 +0.5 2.5 formyltetrahydrofolate deformylase compare
Psyr_4450 +0.5 1.7 transcriptional regulator, TetR family compare
Psyr_3521 +0.5 1.4 transcriptional regulator, LysR family compare
Psyr_3840 +0.5 1.0 conserved hypothetical protein compare
Psyr_4302 +0.5 1.8 conserved hypothetical protein compare
Psyr_3440 +0.5 2.6 Flagellar biosynthesis protein FlhA compare
Psyr_3466 +0.5 0.6 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_0313 +0.5 2.9 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_2538 +0.5 0.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4942 +0.5 1.1 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_2584 +0.5 1.6 IucA/IucC compare
Psyr_3916 +0.5 2.5 methionine synthase (B12-independent) compare
Psyr_1729 +0.5 2.1 transcriptional regulator, MarR family compare
Psyr_0995 +0.5 1.5 Flavin reductase-like protein compare


Specific Phenotypes

For 4 genes in this experiment