Experiment set5IT060 for Shewanella loihica PV-4
LB with Bacitracin 0.25 mg/ml
Group: stressMedia: LB + Bacitracin (0.25 mg/ml)
Culturing: PV4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Adam on 4/30/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 902 D7,D8
Specific Phenotypes
For 9 genes in this experiment
For stress Bacitracin in Shewanella loihica PV-4
For stress Bacitracin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cobalt-zinc-cadmium resistance | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid biosynthesis
- Ubiquinone and menaquinone biosynthesis
- Histidine metabolism
- alpha-Linolenic acid metabolism
- Benzoate degradation via CoA ligation
- Limonene and pinene degradation
- Nitrogen metabolism
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-histidine degradation I | 4 | 4 | 1 |
| L-histidine degradation II | 5 | 3 | 1 |
| L-histidine degradation III | 6 | 4 | 1 |
| Arg/N-end rule pathway (eukaryotic) | 14 | 10 | 2 |
| L-histidine degradation VI | 8 | 7 | 1 |