Experiment set5IT060 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_04865 -4.1 -2.3 SoxR-reducing system protein RseC compare
IAI47_01135 -4.0 -1.0 hypothetical protein compare
IAI47_14325 -3.8 -2.4 ribosome-associated protein YbcJ compare
IAI47_07350 -3.7 -0.9 hypothetical protein compare
IAI47_05195 -3.6 -2.4 DnaA inactivator Hda compare
IAI47_16390 -3.2 -0.8 tRNA-Leu compare
IAI47_05420 -3.2 -1.4 PTS glucose transporter subunit IIA compare
IAI47_21450 -3.2 -1.1 general stress protein compare
IAI47_14470 -3.0 -2.7 YbaB/EbfC family nucleoid-associated protein compare
IAI47_05070 -2.9 -0.7 outer membrane protein assembly factor BamB compare
IAI47_15595 -2.6 -2.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_15485 -2.6 -1.1 molecular chaperone Skp compare
IAI47_03820 -2.5 -3.4 site-specific tyrosine recombinase XerD compare
IAI47_00870 -2.5 -0.9 50S ribosomal protein L31 compare
IAI47_16995 -2.5 -1.9 protein YrbN compare
IAI47_09360 -2.3 -1.2 peptide ABC transporter ATP-binding protein SapF compare
IAI47_07165 -2.3 -1.5 exodeoxyribonuclease I compare
IAI47_13570 -2.2 -2.5 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_17255 -2.1 -2.3 DUF1043 family protein compare
IAI47_15605 -2.1 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_06940 -2.1 -0.7 tyrosine-protein kinase Wzc compare
IAI47_13765 -2.1 -2.4 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_15110 -2.1 -5.0 chromophore lyase compare
IAI47_04870 -2.0 -5.7 elongation factor 4 compare
IAI47_14730 -2.0 -1.0 exodeoxyribonuclease VII small subunit compare
IAI47_03375 -2.0 -8.1 peptide chain release factor 3 compare
IAI47_16085 -2.0 -1.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_17185 -2.0 -6.9 RNA polymerase factor sigma-54 compare
IAI47_05765 -2.0 -2.0 hypothetical protein compare
IAI47_21665 -1.9 -1.6 DUF333 domain-containing protein compare
IAI47_09235 -1.9 -0.9 type I DNA topoisomerase compare
IAI47_00300 -1.9 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_11360 -1.9 -2.2 hypothetical protein compare
IAI47_15970 -1.8 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_03865 -1.8 -3.5 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_13840 -1.8 -2.9 replication initiation negative regulator SeqA compare
IAI47_04835 -1.8 -6.4 ATP-dependent RNA helicase SrmB compare
IAI47_14695 -1.8 -4.8 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_06360 -1.8 -1.5 NADH-quinone oxidoreductase subunit A compare
IAI47_07015 -1.8 -4.3 ABC transporter ATP-binding protein compare
IAI47_02350 -1.8 -0.9 tRNA-Thr compare
IAI47_04300 -1.8 -6.1 recombinase RecA compare
IAI47_07360 -1.8 -2.3 hypothetical protein compare
IAI47_12645 -1.8 -4.1 porin OmpA compare
IAI47_07475 -1.7 -1.0 hypothetical protein compare
IAI47_03610 -1.7 -4.3 YqgE/AlgH family protein compare
IAI47_12175 -1.7 -2.6 anti-sigma-28 factor FlgM compare
IAI47_17035 -1.6 -2.4 ribosome maturation factor RimP compare
IAI47_06320 -1.6 -6.2 phosphate acetyltransferase compare
IAI47_09120 -1.6 -2.5 hypothetical protein compare
IAI47_07525 -1.6 -2.1 conjugal transfer protein TraD compare
IAI47_03805 -1.6 -4.5 FAD assembly factor SdhE compare
IAI47_21675 -1.6 -3.7 helix-turn-helix domain-containing protein compare
IAI47_15980 -1.5 -7.9 catabolite repressor/activator compare
IAI47_20905 -1.5 -3.7 PTS transporter subunit EIIB compare
IAI47_00780 -1.5 -3.3 6-phosphofructokinase compare
IAI47_02090 -1.5 -3.3 elongation factor Tu compare
IAI47_19945 -1.5 -0.6 hypothetical protein compare
IAI47_13885 -1.5 -1.2 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_08085 -1.5 -3.1 helix-turn-helix domain-containing protein compare
IAI47_08745 -1.4 -1.4 transcription antiterminator/RNA stability regulator CspE compare
IAI47_10555 -1.4 -3.1 hypothetical protein compare
IAI47_10470 -1.4 -1.5 electron transport complex subunit E compare
IAI47_04400 -1.4 -3.9 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_11115 -1.4 -2.5 hypothetical protein compare
IAI47_00515 -1.4 -1.8 DNA-directed RNA polymerase subunit omega compare
IAI47_18480 -1.4 -6.3 lipid III flippase WzxE compare
IAI47_11375 -1.4 -1.2 hypothetical protein compare
IAI47_10430 -1.3 -1.9 hypothetical protein compare
IAI47_16190 -1.3 -3.4 molybdopterin adenylyltransferase compare
IAI47_06365 -1.3 -2.9 NADH-quinone oxidoreductase subunit B compare
IAI47_21115 -1.3 -2.0 arsenate reductase (glutaredoxin) compare
IAI47_01820 -1.3 -5.1 two-component system response regulator OmpR compare
IAI47_10435 -1.3 -4.2 transcription modulator YdgT compare
IAI47_14150 -1.3 -7.5 AI-2E family transporter compare
IAI47_05425 -1.3 -3.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_11450 -1.3 -3.1 ankyrin repeat domain-containing protein compare
IAI47_07775 -1.3 -2.2 phosphonate C-P lyase system protein PhnK compare
IAI47_09210 -1.3 -4.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_15850 -1.2 -4.5 prepilin peptidase-dependent pilin compare
IAI47_00430 -1.2 -7.8 DNA polymerase I compare
IAI47_00760 -1.2 -2.9 envelope stress response regulator transcription factor CpxR compare
IAI47_12875 -1.2 -5.7 formate transporter FocA compare
IAI47_02400 -1.2 -1.0 YhdT family protein compare
IAI47_12865 -1.2 -5.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_10100 -1.2 -2.3 ABC transporter ATP-binding protein compare
IAI47_07700 -1.2 -2.6 EAL domain-containing protein compare
IAI47_11475 -1.2 -0.8 hypothetical protein compare
IAI47_18495 -1.2 -3.9 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_08445 -1.2 -0.7 Holliday junction branch migration protein RuvA compare
IAI47_10775 -1.2 -3.1 ribonuclease T compare
IAI47_21790 -1.2 -3.4 helix-turn-helix domain-containing protein compare
IAI47_14955 -1.2 -1.6 phosphate starvation-inducible protein compare
IAI47_12760 -1.2 -6.3 porin OmpF compare
IAI47_14525 -1.2 -3.4 50S ribosomal protein L36 compare
IAI47_17385 -1.2 -1.7 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_17020 -1.2 -1.9 30S ribosome-binding factor RbfA compare
IAI47_09400 -1.2 -1.9 envelope stress response membrane protein PspB compare
IAI47_17120 -1.1 -1.7 BolA family iron metabolism protein IbaG compare
IAI47_02455 -1.1 -5.6 ribonuclease G compare
IAI47_00735 -1.1 -1.2 protein-export chaperone SecB compare
IAI47_04705 -1.1 -0.8 hypothetical protein compare
IAI47_18400 -1.1 -1.7 tyrosine recombinase XerC compare
IAI47_19725 -1.1 -2.8 chemotaxis protein compare
IAI47_13180 -1.1 -3.8 manganese-binding transcriptional regulator MntR compare
IAI47_07550 -1.1 -0.6 tRNA-Asn compare
IAI47_11505 -1.1 -2.8 hypothetical protein compare
IAI47_07275 -1.1 -3.0 DUF2058 domain-containing protein compare
IAI47_12300 -1.1 -1.8 hypothetical protein compare
IAI47_00875 -1.1 -1.2 met regulon transcriptional regulator MetJ compare
IAI47_17005 -1.1 -3.9 polyribonucleotide nucleotidyltransferase compare
IAI47_13640 -1.1 -2.0 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_09790 -1.1 -1.3 DUF1161 domain-containing protein compare
IAI47_14805 -1.1 -4.2 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_06910 -1.1 -4.1 dCTP deaminase compare
IAI47_18840 -1.0 -1.7 membrane protein insertion efficiency factor YidD compare
IAI47_09100 -1.0 -5.3 cardiolipin synthase compare
IAI47_08450 -1.0 -1.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06655 -1.0 -2.2 1-phosphofructokinase compare
IAI47_04755 -1.0 -2.9 AlpA family transcriptional regulator compare
IAI47_09240 -1.0 -1.4 HTH-type transcriptional regulator CysB compare
IAI47_04425 -1.0 -5.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_09040 -1.0 -1.0 NAD-dependent epimerase compare
IAI47_20035 -1.0 -2.7 GNAT family N-acetyltransferase compare
IAI47_15635 -1.0 -1.2 RNA polymerase-binding protein DksA compare
IAI47_10725 -1.0 -1.0 DUF1656 domain-containing protein compare
IAI47_09300 -1.0 -3.4 crotonase/enoyl-CoA hydratase family protein compare
IAI47_13850 -1.0 -2.0 LexA regulated protein compare
IAI47_12880 -1.0 -6.4 formate C-acetyltransferase compare
IAI47_06980 -1.0 -1.9 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_19625 -1.0 -4.6 DeoR/GlpR transcriptional regulator compare
IAI47_15895 -1.0 -1.8 secA regulator SecM compare
IAI47_19550 -1.0 -1.0 DUF1471 domain-containing protein compare
IAI47_10170 -1.0 -2.9 hypothetical protein compare
IAI47_14545 -1.0 -2.1 hypothetical protein compare
IAI47_06455 -1.0 -2.8 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_12885 -1.0 -3.9 pyruvate formate lyase 1-activating protein compare
IAI47_05305 -0.9 -2.5 ArsC family reductase compare
IAI47_13950 -0.9 -0.6 PhoH family protein compare
IAI47_14945 -0.9 -2.0 pyrroline-5-carboxylate reductase compare
IAI47_14075 -0.9 -1.0 transcription antiterminator/RNA stability regulator CspE compare
IAI47_09415 -0.9 -4.5 YcjX family protein compare
IAI47_00505 -0.9 -3.0 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_02585 -0.9 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_11500 -0.9 -1.5 type VI secretion system tip protein VgrG compare
IAI47_09635 -0.9 -2.2 hypothetical protein compare
IAI47_04335 -0.9 -1.4 tRNA-Arg compare
IAI47_06710 -0.9 -3.2 LysR family transcriptional regulator compare
IAI47_06325 -0.9 -3.7 acetate kinase compare
IAI47_20440 -0.9 -1.7 SDR family oxidoreductase compare
IAI47_16095 -0.9 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_13195 -0.9 -3.8 DNA starvation/stationary phase protection protein Dps compare
IAI47_18475 -0.9 -5.0 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_05435 -0.9 -2.4 hypothetical protein compare
IAI47_12245 -0.9 -2.3 YceI family protein compare
IAI47_21235 -0.9 -1.2 hypothetical protein compare
IAI47_08300 -0.9 -5.0 chemotaxis protein CheA compare
IAI47_13745 -0.9 -2.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_09285 -0.9 -2.0 osmotically-inducible lipoprotein OsmB compare
IAI47_17900 -0.9 -0.8 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_09770 -0.9 -1.8 osmoprotectant ABC transporter permease OsmW compare
IAI47_05155 -0.9 -5.8 polyphosphate kinase 1 compare
IAI47_11015 -0.9 -3.3 5-dehydro-4-deoxy-D-glucuronate isomerase compare
IAI47_18485 -0.9 -5.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_18145 -0.9 -1.1 elongation factor Tu compare
IAI47_01825 -0.9 -3.9 two-component system sensor histidine kinase EnvZ compare
IAI47_14910 -0.9 -3.3 recombination-associated protein RdgC compare
IAI47_00845 -0.9 -2.9 HslU--HslV peptidase ATPase subunit compare
IAI47_19685 -0.9 -1.4 hypothetical protein compare
IAI47_09630 -0.9 -3.0 type VI secretion system tube protein Hcp compare
IAI47_12195 -0.9 -2.1 DUF480 domain-containing protein compare
IAI47_10800 -0.9 -2.8 LysR family transcriptional regulator compare
IAI47_06475 -0.9 -2.9 transcriptional regulator RcsB compare
IAI47_03585 -0.9 -1.8 XTP/dITP diphosphatase compare
IAI47_01335 -0.9 -3.4 CPBP family intramembrane metalloprotease compare
IAI47_11310 -0.9 -1.7 redox-regulated ATPase YchF compare
IAI47_20415 -0.9 -3.7 two-component system response regulator DcuR compare
IAI47_04710 -0.8 -1.9 hypothetical protein compare
IAI47_03240 -0.8 -2.2 TonB system transport protein ExbD compare
IAI47_15540 -0.8 -4.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_01180 -0.8 -0.5 prolyl oligopeptidase family serine peptidase compare
IAI47_19600 -0.8 -1.5 ABC transporter ATP-binding protein compare
IAI47_21180 -0.8 -1.6 IS6 family transposase compare
IAI47_16595 -0.8 -1.7 DUF4102 domain-containing protein compare
IAI47_02515 -0.8 -2.8 transcriptional regulator ArgR compare
IAI47_11845 -0.8 -1.4 hypothetical protein compare
IAI47_00120 -0.8 -3.6 sugar kinase compare
IAI47_15235 -0.8 -1.2 hydroxyisourate hydrolase compare
IAI47_18215 -0.8 -0.7 Trk system potassium transporter TrkH compare
IAI47_18770 -0.8 -1.5 type I addiction module toxin, SymE family compare
IAI47_08855 -0.8 -2.5 septum site-determining protein MinC compare
IAI47_18320 -0.8 -4.1 DUF1456 family protein compare
IAI47_15810 -0.8 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_12260 -0.8 -1.9 hypothetical protein compare
IAI47_16990 -0.8 -1.9 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_20625 -0.8 -1.3 DUF2946 domain-containing protein compare
IAI47_04950 -0.8 -3.6 nitrogen regulatory protein P-II compare
IAI47_19290 -0.8 -2.9 AzlD family protein compare
IAI47_08850 -0.8 -2.4 septum site-determining protein MinD compare
IAI47_15600 -0.8 -1.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms