Experiment set5IT059 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 10 mM

200 most important genes:

  gene name fitness t score description  
AO356_02250 -4.2 -7.9 pyridine nucleotide-disulfide oxidoreductase compare
AO356_16600 -3.7 -3.5 malate:quinone oxidoreductase compare
AO356_20830 -3.6 -4.8 phosphoadenosine phosphosulfate reductase compare
AO356_13685 -3.0 -6.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_09800 -3.0 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_24555 -2.9 -2.7 hypothetical protein compare
AO356_18755 -2.9 -9.2 succinylglutamate desuccinylase compare
AO356_04560 -2.7 -3.7 serine peptidase compare
AO356_09810 -2.7 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_06965 -2.6 -9.4 histidinol dehydrogenase compare
AO356_07910 -2.6 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_09520 -2.5 -6.4 phosphoribosyl-AMP cyclohydrolase compare
AO356_19730 -2.5 -1.9 hypothetical protein compare
AO356_11315 -2.5 -2.4 shikimate dehydrogenase compare
AO356_21125 -2.5 -4.0 cyclic peptide transporter compare
AO356_19420 -2.4 -3.1 septum formation inhibitor compare
AO356_07005 -2.4 -2.1 ABC transporter ATP-binding protein compare
AO356_01750 -2.4 -4.4 ATP-dependent Clp protease proteolytic subunit compare
AO356_05670 -2.4 -3.8 recombinase RecA compare
AO356_10185 -2.4 -10.0 glutamate--cysteine ligase compare
AO356_06575 -2.4 -2.7 outer membrane protein assembly factor BamB compare
AO356_09815 -2.3 -6.8 imidazoleglycerol-phosphate dehydratase compare
AO356_02265 -2.3 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_06995 -2.3 -6.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_22125 -2.2 -7.7 isocitrate dehydrogenase compare
AO356_06970 -2.2 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_13475 -2.2 -8.1 glutathione synthetase compare
AO356_02465 -2.1 -2.8 carbonate dehydratase compare
AO356_01740 -2.1 -3.7 DNA-binding protein compare
AO356_08635 -2.1 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
AO356_12515 -2.1 -5.4 exodeoxyribonuclease III compare
AO356_20090 -2.0 -2.4 protein tyrosine phosphatase compare
AO356_21320 -2.0 -1.5 tRNA-Asn compare
AO356_15260 -1.9 -1.7 dehydratase compare
AO356_01745 -1.9 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_08235 -1.9 -8.7 histidine kinase compare
AO356_11450 -1.9 -2.5 cytochrome C compare
AO356_09540 -1.9 -2.5 twin-arginine protein translocation system subunit TatC compare
AO356_11420 -1.9 -9.0 histidine kinase compare
AO356_17075 -1.9 -3.2 cytochrome C compare
AO356_08930 -1.8 -2.9 heptose kinase compare
AO356_19090 -1.8 -2.6 phosphoribosylaminoimidazole synthetase compare
AO356_04570 -1.8 -8.1 RNA polymerase subunit sigma compare
AO356_15325 -1.8 -3.3 hypothetical protein compare
AO356_20175 -1.8 -1.2 3-oxoacyl-ACP synthase compare
AO356_08585 -1.7 -3.8 50S ribosomal protein L9 compare
AO356_14295 -1.7 -2.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_03350 -1.7 -4.4 glycosyl transferase compare
AO356_11610 -1.7 -2.0 glycerol acyltransferase compare
AO356_11585 -1.7 -4.6 lipid A biosynthesis lauroyl acyltransferase compare
AO356_18025 -1.7 -2.8 ATP-dependent DNA helicase RuvB compare
AO356_05080 -1.6 -1.4 peptide deformylase compare
AO356_10340 -1.6 -9.6 phosphoserine phosphatase compare
AO356_06990 -1.6 -5.1 toluene tolerance protein compare
AO356_27995 -1.6 -2.1 thioredoxin reductase compare
AO356_03400 -1.6 -4.9 aminotransferase DegT compare
AO356_17985 -1.6 -5.4 cold-shock protein compare
AO356_27180 -1.5 -3.9 hypothetical protein compare
AO356_26040 -1.5 -1.6 hypothetical protein compare
AO356_17070 -1.5 -2.7 cytochrome B compare
AO356_19840 -1.5 -5.9 histidine kinase compare
AO356_09525 -1.5 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_19550 -1.5 -6.5 acireductone dioxygenase compare
AO356_21275 -1.5 -1.9 peptidase compare
AO356_06385 -1.5 -2.3 recombinase XerD compare
AO356_06685 -1.5 -1.1 preprotein translocase subunit YajC compare
AO356_09795 -1.5 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_07210 -1.4 -2.3 histidine kinase compare
AO356_18115 -1.4 -7.2 transporter compare
AO356_28090 -1.4 -1.6 ABC transporter ATP-binding protein compare
AO356_02190 -1.4 -5.5 hypothetical protein compare
AO356_03405 -1.4 -3.0 serine acetyltransferase compare
AO356_17785 -1.4 -1.6 heme utilization protein compare
AO356_20920 -1.4 -3.2 peptidase compare
AO356_20915 -1.4 -2.1 thiamine pyrophosphate-binding protein compare
AO356_11270 -1.4 -6.5 potassium transporter peripheral membrane component compare
AO356_04875 -1.4 -7.4 antibiotic transporter compare
AO356_23500 -1.4 -6.3 TetR family transcriptional regulator compare
AO356_08640 -1.4 -3.7 membrane protease HflC compare
AO356_19225 -1.3 -8.8 histidine kinase compare
AO356_11340 -1.3 -1.4 NADH-flavin reductase compare
AO356_10875 -1.3 -10.9 acetyl-CoA hydrolase conserved
AO356_13655 -1.3 -4.5 hypothetical protein compare
AO356_12520 -1.3 -2.2 orotate phosphoribosyltransferase compare
AO356_26390 -1.3 -2.8 hypothetical protein compare
AO356_16185 -1.3 -3.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_14505 -1.3 -2.1 peptidase M23 compare
AO356_03500 -1.3 -3.8 3-oxoacyl-ACP reductase compare
AO356_22585 -1.3 -2.7 MerR family transcriptional regulator compare
AO356_04885 -1.3 -4.9 multidrug transporter compare
AO356_28695 -1.3 -2.8 IclR family transcriptional regulator compare
AO356_25130 -1.3 -1.7 hypothetical protein compare
AO356_09455 -1.3 -1.5 ATP-dependent protease subunit HslV compare
AO356_12380 -1.2 -5.6 ATP-dependent DNA helicase RecG compare
AO356_03375 -1.2 -1.7 ExsB family protein compare
AO356_18020 -1.2 -2.9 ATP-dependent DNA helicase RuvA compare
AO356_16435 -1.2 -1.6 hypothetical protein compare
AO356_13480 -1.2 -3.7 pilus assembly protein PilG compare
AO356_08910 -1.2 -3.5 carbamoyltransferase compare
AO356_03415 -1.2 -5.6 oxidoreductase compare
AO356_12725 -1.2 -4.0 recombinase XerC compare
AO356_13345 -1.2 -3.3 cell division ATP-binding protein FtsE compare
AO356_20475 -1.2 -1.0 hypothetical protein compare
AO356_09565 -1.2 -5.9 glucan biosynthesis protein G compare
AO356_02485 -1.2 -2.7 transcriptional regulator compare
AO356_14940 -1.2 -6.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
AO356_09560 -1.2 -8.4 glucosyltransferase MdoH compare
AO356_04565 -1.2 -6.7 RNA polymerase subunit sigma compare
AO356_00575 -1.2 -1.7 SCP-2 family sterol carrier protein compare
AO356_15165 -1.2 -2.1 protein cII compare
AO356_02325 -1.1 -1.7 3-ketoacyl-CoA thiolase compare
AO356_13350 -1.1 -9.2 cell division protein FtsX compare
AO356_25120 -1.1 -2.1 hypothetical protein compare
AO356_20850 -1.1 -3.7 hypothetical protein compare
AO356_14825 -1.1 -1.9 AraC family transcriptional regulator compare
AO356_19425 -1.1 -1.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_03775 -1.1 -1.2 flagellar assembly protein FliO compare
AO356_11055 -1.1 -4.0 long-chain acyl-CoA thioester hydrolase compare
AO356_03995 -1.1 -6.3 potassium transporter TrkH compare
AO356_10170 -1.1 -2.3 chemotaxis protein CheY compare
AO356_15160 -1.1 -1.9 hypothetical protein compare
AO356_08890 -1.1 -4.1 glycosyltransferase compare
AO356_17065 -1.1 -1.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_10565 -1.1 -8.3 channel protein TolC compare
AO356_03855 -1.1 -8.2 AAA family ATPase compare
AO356_02800 -1.1 -2.3 transporter compare
AO356_02640 -1.1 -2.0 type III secretion system protein PrgJ compare
AO356_18060 -1.0 -5.6 hypothetical protein compare
AO356_18010 -1.0 -5.5 hypothetical protein compare
AO356_05640 -1.0 -1.9 LuxR family transcriptional regulator compare
AO356_08670 -1.0 -1.6 N-acetylmuramoyl-L-alanine amidase compare
AO356_21310 -1.0 -2.0 filamentous hemagglutinin compare
AO356_10555 -1.0 -7.4 hemolysin secretion protein D compare
AO356_15200 -1.0 -5.5 hypothetical protein compare
AO356_15420 -1.0 -2.7 hypothetical protein compare
AO356_24410 -1.0 -2.5 alanine acetyltransferase compare
AO356_08660 -1.0 -5.5 tRNA dimethylallyltransferase compare
AO356_17515 -1.0 -6.7 murein transglycosylase compare
AO356_10345 -1.0 -3.4 RNA pyrophosphohydrolase compare
AO356_23645 -1.0 -1.3 hypothetical protein compare
AO356_10560 -1.0 -7.6 ABC transporter compare
AO356_00170 -1.0 -1.8 lytic transglycosylase compare
AO356_10580 -1.0 -6.3 hypothetical protein compare
AO356_09095 -1.0 -1.2 hypothetical protein compare
AO356_24845 -1.0 -2.3 ATPase compare
AO356_02420 -1.0 -4.5 cytochrome C oxidase Cbb3 compare
AO356_06960 -1.0 -4.8 histidinol-phosphate aminotransferase compare
AO356_09765 -1.0 -2.1 sulfurtransferase compare
AO356_11045 -1.0 -6.0 phosphate-binding protein compare
AO356_23595 -1.0 -1.6 short-chain dehydrogenase compare
AO356_12640 -1.0 -1.6 cytochrome C compare
AO356_25750 -0.9 -1.7 GntR family transcriptional regulator compare
AO356_07050 -0.9 -3.5 glmZ(sRNA)-inactivating NTPase compare
AO356_03345 -0.9 -4.4 hypothetical protein compare
AO356_21220 -0.9 -1.4 peptide ABC transporter substrate-binding protein compare
AO356_14915 -0.9 -2.1 methyltransferase compare
AO356_05245 -0.9 -2.7 heme oxygenase compare
AO356_21135 -0.9 -3.9 class V aminotransferase compare
AO356_12780 -0.9 -4.2 argininosuccinate lyase compare
AO356_01590 -0.9 -2.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
AO356_16955 -0.9 -3.9 disulfide bond formation protein B compare
AO356_22950 -0.9 -1.1 peptidylprolyl isomerase compare
AO356_27405 -0.9 -0.8 MarR family transcriptional regulator compare
AO356_07480 -0.9 -2.3 carbamoyl phosphate synthase large subunit compare
AO356_10570 -0.9 -8.3 large adhesive protein compare
AO356_02460 -0.9 -1.8 hypothetical protein compare
AO356_17090 -0.9 -3.1 phospholipid-binding protein compare
AO356_20520 -0.9 -1.0 oxidoreductase compare
AO356_25795 -0.9 -1.8 transglutaminase compare
AO356_19080 -0.9 -5.4 dehydrogenase compare
AO356_29105 -0.9 -1.1 fumarylacetoacetate hydrolase compare
AO356_00395 -0.9 -3.5 peptide ABC transporter permease compare
AO356_02405 -0.9 -6.3 cytochrome C oxidase Cbb3 compare
AO356_24725 -0.9 -2.1 alkylhydroperoxidase compare
AO356_17890 -0.9 -1.1 H-NS histone compare
AO356_02290 -0.9 -1.8 TetR family transcriptional regulator compare
AO356_17520 -0.9 -1.2 phosphoribosylformylglycinamidine synthase compare
AO356_17950 -0.8 -4.4 histidine kinase compare
AO356_13770 -0.8 -2.8 ATP-dependent RNA helicase compare
AO356_12885 -0.8 -4.9 hypothetical protein compare
AO356_02875 -0.8 -3.1 peroxiredoxin compare
AO356_08710 -0.8 -6.4 flagellar motor stator protein MotA compare
AO356_01840 -0.8 -0.8 uracil permease compare
AO356_22005 -0.8 -2.7 CopG family transcriptional regulator compare
AO356_01755 -0.8 -2.0 trigger factor compare
AO356_18150 -0.8 -2.5 hypothetical protein compare
AO356_15305 -0.8 -1.8 50S rRNA methyltransferase compare
AO356_05415 -0.8 -2.6 hypothetical protein compare
AO356_30345 -0.8 -3.0 IclR family transcriptional regulator compare
AO356_02335 -0.8 -2.4 hypothetical protein compare
AO356_22815 -0.8 -1.1 lactoylglutathione lyase compare
AO356_16970 -0.8 -5.5 cytochrome o ubiquinol oxidase subunit III compare
AO356_24895 -0.8 -2.9 butanediol dehydrogenase compare
AO356_03620 -0.8 -2.4 cytochrome C compare
AO356_02700 -0.8 -1.7 type III secretion system protein SpaQ compare
AO356_21655 -0.8 -2.8 LysR family transcriptional regulator compare
AO356_09185 -0.8 -1.1 hypothetical protein compare
AO356_09775 -0.8 -4.3 peptidase M23 compare
AO356_23130 -0.8 -1.7 hypothetical protein compare
AO356_21160 -0.8 -3.3 RND transporter compare


Specific Phenotypes

For 4 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas fluorescens FW300-N2C3

For stress 1-ethyl-3-methylimidazolium acetate across organisms