Experiment set5IT059 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Lima bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -4.7 -3.5 anthranilate synthase, component II compare
Psyr_4270 -4.4 -9.7 serine hydroxymethyltransferase compare
Psyr_0377 -4.3 -7.7 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0033 -4.3 -4.1 tryptophan synthase, alpha chain compare
Psyr_0219 -4.2 -11.9 phosphomannomutase compare
Psyr_1269 -4.2 -2.9 phosphoribosylformylglycinamidine synthase compare
Psyr_1663 -4.0 -5.5 phosphoribosylanthranilate isomerase compare
Psyr_0034 -4.0 -4.8 tryptophan synthase, beta chain compare
Psyr_1614 -3.9 -4.6 lipid A biosynthesis acyltransferase compare
Psyr_0378 -3.8 -11.0 Glycosyl transferase, family 2 compare
Psyr_1668 -3.7 -6.1 amidophosphoribosyltransferase compare
Psyr_4609 -3.6 -15.5 anthranilate synthase, component I compare
Psyr_0826 -3.5 -5.8 glucose-6-phosphate isomerase compare
Psyr_1056 -3.5 -5.2 Poly(beta-D-mannuronate) lyase compare
Psyr_0383 -3.5 -2.2 Twin-arginine translocation protein TatB compare
Psyr_0529 -3.4 -3.3 Glycosyl transferase, group 1 compare
Psyr_4852 -3.4 -10.2 D-3-phosphoglycerate dehydrogenase compare
Psyr_4407 -3.4 -3.2 phosphoribosylamine--glycine ligase compare
Psyr_1985 -3.4 -11.4 3-isopropylmalate dehydrogenase compare
Psyr_3008 -3.4 -6.0 Undecaprenyl-diphosphatase compare
Psyr_1748 -3.3 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1613 -3.3 -5.4 septum site-determining protein MinC compare
Psyr_4362 -3.3 -2.2 Rare lipoprotein A compare
Psyr_1350 -3.2 -4.8 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3684 -3.2 -2.7 NLP/P60 compare
Psyr_1669 -3.1 -10.5 O-succinylhomoserine sulfhydrylase compare
Psyr_0923 -3.1 -5.9 hypothetical protein compare
Psyr_0915 -3.1 -8.3 NAD-dependent epimerase/dehydratase compare
Psyr_0918 -3.1 -12.5 ABC transporter compare
Psyr_4408 -3.0 -8.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0473 -3.0 -5.5 Methionine biosynthesis MetW compare
Psyr_0531 -3.0 -2.9 LmbE-like protein compare
Psyr_0474 -2.9 -7.1 homoserine O-acetyltransferase compare
Psyr_1373 -2.9 -2.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4116 -2.8 -2.6 Transport-associated protein compare
Psyr_4683 -2.8 -5.6 dethiobiotin synthase compare
Psyr_4991 -2.8 -3.3 hypothetical protein compare
Psyr_0532 -2.7 -6.2 conserved hypothetical protein compare
Psyr_4893 -2.7 -2.1 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0917 -2.7 -8.8 ABC-2 compare
Psyr_4369 -2.7 -5.2 glutamate-5-semialdehyde dehydrogenase compare
Psyr_1914 -2.6 -11.5 transaldolase compare
Psyr_1408 -2.6 -2.9 Holliday junction endonuclease RuvC compare
Psyr_0025 -2.6 -4.8 shikimate dehydrogenase compare
Psyr_3958 -2.6 -10.2 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_4203 -2.6 -1.7 SsrA-binding protein compare
Psyr_3199 -2.5 -3.8 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0951 -2.5 -4.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_3886 -2.5 -1.9 methionyl-tRNA synthetase compare
Psyr_0014 -2.5 -3.8 lipid A biosynthesis acyltransferase compare
Psyr_4130 -2.5 -11.6 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_4018 -2.5 -7.7 Formyltetrahydrofolate deformylase compare
Psyr_3287 -2.4 -3.1 DNA topoisomerase I compare
Psyr_1983 -2.4 -5.2 3-isopropylmalate dehydratase, large subunit compare
Psyr_0557 -2.4 -5.6 phosphoserine phosphatase compare
Psyr_0919 -2.4 -12.0 Chromosome segregation ATPase-like protein compare
Psyr_3013 -2.3 -2.2 magnesium chelatase subunit ChlD compare
Psyr_1410 -2.3 -4.2 Holliday junction DNA helicase RuvB compare
Psyr_3179 -2.3 -4.0 DNA translocase FtsK compare
Psyr_0936 -2.2 -9.5 Glycosyl transferase, group 1 compare
Psyr_4627 -2.2 -2.5 dimethyladenosine transferase compare
Psyr_4580 -2.2 -2.5 anthranilate phosphoribosyltransferase compare
Psyr_1544 -2.2 -4.4 SirA-like protein compare
Psyr_4686 -2.2 -5.7 8-amino-7-oxononanoate synthase compare
Psyr_4019 -2.1 -3.9 H-NS family protein MvaT compare
Psyr_2980 -2.1 -3.9 UDP-glucose pyrophosphorylase compare
Psyr_1984 -2.1 -2.9 3-isopropylmalate dehydratase, small subunit compare
Psyr_0623 -2.1 -3.4 Peptidase S24, S26A and S26B compare
Psyr_4015 -2.1 -2.0 conserved domain protein compare
Psyr_3193 -2.0 -2.7 Transcription factor jumonji, jmjC compare
Psyr_3637 -2.0 -10.6 Glycosyl transferase, family 4 compare
Psyr_0524 -2.0 -3.9 Lipopolysaccharide kinase compare
Psyr_3755 -2.0 -2.2 conserved hypothetical protein compare
Psyr_1055 -2.0 -11.3 Membrane bound O-acyl transferase, MBOAT compare
Psyr_0914 -1.9 -8.2 Glycosyl transferase, group 1 compare
Psyr_0475 -1.9 -3.9 Protein of unknown function YGGT compare
Psyr_2617 -1.9 -2.7 Secretion protein HlyD compare
Psyr_4687 -1.9 -6.9 biotin synthase compare
Psyr_4582 -1.9 -1.4 hypothetical protein compare
Psyr_3933 -1.9 -2.5 conserved hypothetical protein compare
Psyr_1317 -1.9 -2.0 conserved hypothetical protein compare
Psyr_0469 -1.8 -6.7 dihydroxyacid dehydratase compare
Psyr_1667 -1.8 -3.5 Colicin V production protein compare
Psyr_1418 -1.8 -3.5 Radical SAM compare
Psyr_1401 -1.8 -4.5 Histidine triad (HIT) protein compare
Psyr_0920 -1.8 -12.2 Glycosyl transferase, group 1 compare
Psyr_0534 -1.8 -9.7 membrane protein, putative compare
Psyr_2929 -1.8 -4.2 transcriptional regulator, LysR family compare
Psyr_3198 -1.7 -2.5 NADH dehydrogenase subunit B compare
Psyr_3636 -1.7 -8.4 Polysaccharide biosynthesis protein CapD compare
Psyr_0704 -1.7 -5.9 glutamate 5-kinase compare
Psyr_0916 -1.7 -7.4 GDP-mannose 4,6-dehydratase compare
Psyr_0831 -1.7 -2.9 Two-component response regulator CbrB compare
Psyr_3202 -1.7 -2.0 NADH dehydrogenase subunit G compare
Psyr_1588 -1.7 -3.1 Putative exonuclease, RdgC compare
Psyr_1212 -1.7 -2.6 type III secretion protein HrpO compare
Psyr_2461 -1.7 -1.9 Uncharacterized conserved protein UCP030820 compare
Psyr_0202 -1.7 -7.6 transcriptional regulator, LysR family compare
Psyr_1140 -1.6 -3.3 Disulfide bond formation protein DsbB compare
Psyr_0846 -1.6 -7.0 acetolactate synthase, large subunit compare
Psyr_1859 -1.6 -3.4 conserved hypothetical protein compare
Psyr_3174 -1.6 -3.6 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_1395 -1.6 -4.5 virulence compare
Psyr_4008 -1.6 -10.3 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_2077 -1.6 -4.1 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0478 -1.6 -6.4 pilus retraction ATPase PilT compare
Psyr_4127 -1.5 -3.4 S23 ribosomal compare
Psyr_0848 -1.5 -7.6 ketol-acid reductoisomerase compare
Psyr_3055 -1.5 -2.3 Aminoglycoside phosphotransferase compare
Psyr_0827 -1.5 -3.7 pantothenate synthetase compare
Psyr_1054 -1.5 -4.4 alginate biosynthesis protein AlgJ compare
Psyr_1053 -1.5 -4.4 alginate biosynthesis protein AlgF compare
Psyr_4194 -1.5 -3.3 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4567 -1.5 -4.1 Protein of unknown function UPF0075 compare
Psyr_5133 -1.5 -4.2 tRNA modification GTPase trmE compare
Psyr_1257 -1.4 -5.8 2-isopropylmalate synthase compare
Psyr_4417 -1.4 -1.6 Ferredoxin--nitrite reductase compare
Psyr_4126 -1.4 -8.1 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_1396 -1.4 -7.5 Protein of unknown function DUF470:Protein of unknown function DUF471:Protein of unknown function DUF472 compare
Psyr_2613 -1.4 -4.8 Cyclic peptide transporter compare
Psyr_4161 -1.4 -1.7 Rod shape-determining protein MreD compare
Psyr_4842 -1.4 -4.9 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_0575 -1.4 -2.2 protease FtsH subunit HflC compare
Psyr_0167 -1.4 -2.0 hypothetical protein compare
Psyr_3581 -1.4 -4.4 ribosomal large subunit pseudouridine synthase B compare
Psyr_4136 -1.4 -1.2 BolA-like protein compare
Psyr_0724 -1.4 -2.6 conserved hypothetical protein compare
Psyr_2337 -1.4 -2.0 conserved hypothetical protein compare
Psyr_4007 -1.4 -5.8 Secretion protein HlyD compare
Psyr_2851 -1.4 -2.0 conserved hypothetical protein compare
Psyr_3083 -1.3 -2.4 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4898 -1.3 -6.2 aromatic amino acid aminotransferase apoenzyme compare
Psyr_4100 -1.3 -4.0 D-alanine--D-alanine ligase compare
Psyr_3014 -1.3 -2.8 protoporphyrin IX magnesium-chelatase compare
Psyr_0579 -1.3 -7.3 RNAse R compare
Psyr_2757 -1.3 -2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4512 -1.3 -4.3 putative phage-related protein compare
Psyr_0674 -1.3 -2.3 Protein of unknown function UPF0029 compare
Psyr_4788 -1.3 -1.3 lipoprotein, putative compare
Psyr_4051 -1.3 -1.8 transcriptional regulator, ArsR family compare
Psyr_5130 -1.3 -5.1 chromosome segregation ATPase compare
Psyr_1953 -1.3 -1.1 conserved hypothetical protein compare
Psyr_1749 -1.3 -4.6 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_1251 -1.3 -2.7 quinoprotein compare
Psyr_4896 -1.3 -3.9 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4894 -1.3 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4158 -1.3 -6.3 conserved hypothetical protein compare
Psyr_5072 -1.3 -1.1 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4414 -1.3 -3.8 precorrin-3 methyltransferase compare
Psyr_1806 -1.2 -1.8 Ureidoglycolate hydrolase compare
Psyr_1057 -1.2 -5.8 alginate biosynthesis protein AlgX compare
Psyr_4418 -1.2 -1.8 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_4128 -1.2 -3.8 sulfate adenylyltransferase subunit 2 compare
Psyr_3450 -1.2 -2.3 Hpt compare
Psyr_5053 -1.2 -4.3 asparaginase compare
Psyr_0303 -1.2 -2.5 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_3680 -1.2 -2.0 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_1816 -1.2 -2.5 transcriptional regulator, GntR family compare
Psyr_0555 -1.2 -3.1 Protein of unknown function DUF330 compare
Psyr_0847 -1.2 -3.4 acetolactate synthase, small subunit compare
Psyr_1910 -1.2 -3.7 VacJ-like lipoprotein compare
Psyr_2868 -1.2 -3.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2738 -1.2 -3.2 regulatory protein, LysR compare
Psyr_4684 -1.2 -2.1 biotin synthesis protein BioC compare
Psyr_0835 -1.2 -3.6 transcriptional regulator, TraR/DksA family compare
Psyr_3691 -1.2 -3.7 conserved hypothetical protein compare
Psyr_1058 -1.2 -4.9 Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis compare
Psyr_4132 -1.2 -5.4 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0680 -1.2 -2.6 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_1988 -1.2 -2.2 2-keto-3-deoxy-phosphogalactonate aldolase compare
Psyr_4897 -1.2 -2.3 imidazoleglycerol-phosphate dehydratase compare
Psyr_1372 -1.2 -1.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_0435 -1.2 -1.3 membrane protein, putative compare
Psyr_1802 -1.1 -1.8 transcriptional regulator, AsnC family compare
Psyr_0168 -1.1 -4.4 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_3791 -1.1 -1.8 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_1616 -1.1 -1.8 Rieske [2Fe-2S] region compare
Psyr_1417 -1.1 -4.9 TPR repeat protein compare
Psyr_2885 -1.1 -3.5 xylose ABC transporter ATP-binding protein compare
Psyr_1148 -1.1 -3.1 branched chain amino acid aminotransferase apoenzyme compare
Psyr_4009 -1.1 -4.5 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1154 -1.1 -2.3 Copper/Zinc superoxide dismutase compare
Psyr_3000 -1.1 -1.5 methyltransferase, putative compare
Psyr_5067 -1.1 -3.0 conserved hypothetical protein compare
Psyr_4001 -1.1 -2.0 conserved domain protein compare
Psyr_4481 -1.1 -2.7 outer membrane transport energization protein ExbB compare
Psyr_1061 -1.1 -3.4 alginate biosynthesis protein Alg44 compare
Psyr_3088 -1.1 -2.9 Glycosyl transferase, group 1 compare
Psyr_3852 -1.1 -2.6 lipoprotein SlyB, putative compare
Psyr_0533 -1.1 -3.5 conserved hypothetical protein compare
Psyr_3554 -1.0 -1.1 Carbon storage regulator compare
Psyr_0758 -1.0 -7.7 beta-fructofuranosidase compare
Psyr_0811 -1.0 -3.9 Integral membrane protein TerC compare
Psyr_1059 -1.0 -4.3 alginate export porin compare
Psyr_3696 -1.0 -2.7 23S rRNA m(5)U-1939 methyltransferase compare
Psyr_3678 -1.0 -3.7 adenosylcobinamide-phosphate synthase compare
Psyr_2292 -1.0 -1.8 L-glutaminase compare
Psyr_2095 -1.0 -3.8 Conserved TM helix compare
Psyr_4133 -1.0 -5.5 histidinol dehydrogenase compare
Psyr_1678 -1.0 -0.7 Hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment