Experiment set5IT059 for Pseudomonas fluorescens SBW25-INTG

Compare to:

no extra nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.1 -5.9 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.9 -7.0 S41 family peptidase compare
PFLU_RS14550 -5.3 -3.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS26545 -4.5 -14.2 sel1 repeat family protein compare
PFLU_RS28695 -4.2 -7.5 phosphoglycerate dehydrogenase compare
PFLU_RS23065 -4.0 -9.2 phosphate acyltransferase PlsX compare
PFLU_RS24125 -3.9 -5.9 cold-shock protein compare
PFLU_RS18505 -3.7 -10.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24485 -3.7 -14.5 hypothetical protein compare
PFLU_RS22740 -3.5 -5.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS28535 -3.5 -16.0 dihydroxy-acid dehydratase compare
PFLU_RS28645 -3.5 -18.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02365 -3.5 -14.8 glycosyltransferase compare
PFLU_RS29885 -3.5 -12.4 LysR family transcriptional regulator compare
PFLU_RS01685 -3.5 -5.7 nitrogen regulation protein NR(I) compare
PFLU_RS22095 -3.4 -20.9 GTP diphosphokinase compare
PFLU_RS29880 -3.4 -15.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS04430 -3.3 -6.6 ATP-binding cassette domain-containing protein compare
PFLU_RS25640 -3.3 -12.9 ketol-acid reductoisomerase compare
PFLU_RS23590 -3.2 -3.8 gluconokinase compare
PFLU_RS23070 -3.2 -2.2 50S ribosomal protein L32 compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS29875 -3.2 -16.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS08505 -3.1 -8.1 protease HtpX compare
PFLU_RS04070 -3.1 -5.5 peptide chain release factor 3 compare
PFLU_RS12975 -3.1 -6.4 DUF934 domain-containing protein compare
PFLU_RS22595 -3.0 -4.1 OmpA family protein compare
PFLU_RS28165 -3.0 -12.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04385 -3.0 -12.5 RNase adapter RapZ compare
PFLU_RS25735 -3.0 -8.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS22105 -3.0 -6.2 cysteine synthase CysM compare
PFLU_RS07785 -2.9 -10.9 VacJ family lipoprotein compare
PFLU_RS26770 -2.9 -15.9 DedA family protein compare
PFLU_RS04435 -2.9 -6.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS13120 -2.8 -2.6 hypothetical protein compare
PFLU_RS07695 -2.8 -5.2 beta-N-acetylhexosaminidase compare
PFLU_RS12980 -2.7 -9.9 nitrite/sulfite reductase compare
PFLU_RS04445 -2.7 -7.4 ABC transporter substrate-binding protein compare
PFLU_RS25755 -2.7 -4.4 pantoate--beta-alanine ligase compare
PFLU_RS23585 -2.7 -9.7 GntP family permease compare
PFLU_RS20510 -2.6 -13.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS04440 -2.6 -9.6 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS23305 -2.6 -10.9 arginine N-succinyltransferase compare
PFLU_RS08155 -2.5 -4.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS20580 -2.5 -13.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS26640 -2.5 -11.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS26735 -2.5 -11.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS28650 -2.5 -8.7 RNA pyrophosphohydrolase compare
PFLU_RS20565 -2.5 -14.0 3-isopropylmalate dehydrogenase compare
PFLU_RS28965 -2.5 -10.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23310 -2.5 -9.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01900 -2.4 -8.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS21495 -2.4 -3.2 TlpA family protein disulfide reductase compare
PFLU_RS25730 -2.4 -16.1 PAS domain S-box protein compare
PFLU_RS23920 -2.4 -3.4 septation protein A compare
PFLU_RS06320 -2.4 -3.7 OmpH family outer membrane protein compare
PFLU_RS24085 -2.4 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS04315 -2.4 -4.4 rod shape-determining protein MreD compare
PFLU_RS25760 -2.3 -13.0 glucose-6-phosphate isomerase compare
PFLU_RS03770 -2.3 -13.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS28655 -2.3 -13.3 HAD family hydrolase compare
PFLU_RS09980 -2.3 -16.6 peptidase S41 compare
PFLU_RS22575 -2.3 -7.6 ANTAR domain-containing protein conserved
PFLU_RS16710 -2.3 -4.6 nitrite reductase small subunit NirD compare
PFLU_RS28725 -2.3 -12.6 DUF2059 domain-containing protein compare
PFLU_RS26595 -2.3 -1.5 lipoprotein compare
PFLU_RS25360 -2.3 -7.7 glutamate 5-kinase compare
PFLU_RS29515 -2.2 -10.7 RidA family protein compare
PFLU_RS02490 -2.2 -12.0 phosphoserine phosphatase SerB compare
PFLU_RS27440 -2.2 -7.8 nucleotidyltransferase family protein compare
PFLU_RS20575 -2.2 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS21300 -2.2 -6.4 cysteine hydrolase compare
PFLU_RS28385 -2.2 -11.0 homoserine O-acetyltransferase compare
PFLU_RS00180 -2.2 -8.0 tryptophan synthase subunit beta compare
PFLU_RS04650 -2.2 -15.3 ABC transporter substrate-binding protein compare
PFLU_RS01605 -2.2 -9.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS07650 -2.1 -13.5 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS18635 -2.1 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS03765 -2.1 -10.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01610 -2.1 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS24765 -2.1 -15.5 2-isopropylmalate synthase compare
PFLU_RS04465 -2.1 -8.3 ATP phosphoribosyltransferase compare
PFLU_RS04325 -2.1 -13.8 ribonuclease G compare
PFLU_RS25715 -2.0 -10.2 RNA polymerase-binding protein DksA compare
PFLU_RS27620 -2.0 -15.0 acyl-CoA dehydrogenase compare
PFLU_RS00415 -2.0 -1.9 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS14820 -2.0 -5.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS00175 -2.0 -8.3 tryptophan synthase subunit alpha compare
PFLU_RS25750 -2.0 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS13540 -2.0 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28390 -2.0 -8.3 methionine biosynthesis protein MetW compare
PFLU_RS01625 -2.0 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01620 -2.0 -9.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS00535 -1.9 -2.9 DUF1127 domain-containing protein compare
PFLU_RS29090 -1.9 -7.5 exopolyphosphatase compare
PFLU_RS18530 -1.9 -4.7 DNA translocase FtsK compare
PFLU_RS06265 -1.9 -14.5 [protein-PII] uridylyltransferase compare
PFLU_RS25920 -1.9 -4.0 outer membrane protein assembly factor BamE compare
PFLU_RS24330 -1.9 -6.5 phosphogluconate dehydratase compare
PFLU_RS21060 -1.8 -4.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS29490 -1.8 -8.5 ribonuclease PH compare
PFLU_RS25585 -1.8 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS03970 -1.8 -9.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01690 -1.8 -7.1 nitrogen regulation protein NR(II) compare
PFLU_RS08160 -1.8 -7.7 sugar transferase compare
PFLU_RS16715 -1.8 -10.0 nitrite reductase large subunit conserved
PFLU_RS18670 -1.8 -2.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS21360 -1.7 -2.5 MarR family transcriptional regulator compare
PFLU_RS24095 -1.7 -2.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS26905 -1.7 -9.1 transcriptional regulator NrdR compare
PFLU_RS21665 -1.7 -6.3 MinD/ParA family protein compare
PFLU_RS24790 -1.7 -4.8 tetratricopeptide repeat protein compare
PFLU_RS02460 -1.7 -10.5 alpha/beta fold hydrolase compare
PFLU_RS20540 -1.7 -9.5 phosphoribosylanthranilate isomerase compare
PFLU_RS28195 -1.7 -11.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS09535 -1.7 -1.8 TIGR03750 family conjugal transfer protein compare
PFLU_RS27445 -1.7 -10.7 phosphotransferase compare
PFLU_RS02000 -1.6 -14.3 penicillin-binding protein 1A compare
PFLU_RS08410 -1.6 -6.5 HTH-type transcriptional regulator CysB compare
PFLU_RS27365 -1.6 -6.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS08630 -1.6 -5.9 molybdopterin molybdotransferase MoeA compare
PFLU_RS24325 -1.6 -9.9 glucokinase compare
PFLU_RS03610 -1.6 -5.5 redox-regulated ATPase YchF compare
PFLU_RS07225 -1.6 -11.4 L-aspartate oxidase compare
PFLU_RS27635 -1.5 -6.8 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS27650 -1.5 -10.4 biotin synthase BioB compare
PFLU_RS01895 -1.5 -5.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02050 -1.5 -10.5 NAD(P)-binding protein compare
PFLU_RS19175 -1.5 -7.1 trigger factor compare
PFLU_RS08065 -1.5 -7.3 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS20515 -1.5 -4.3 amidophosphoribosyltransferase compare
PFLU_RS26565 -1.5 -2.1 rRNA maturation RNase YbeY compare
PFLU_RS24255 -1.5 -8.7 pyruvate kinase compare
PFLU_RS22580 -1.5 -8.7 NarK/NasA family nitrate transporter conserved
PFLU_RS07275 -1.5 -2.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS24475 -1.5 -11.6 AmpG family muropeptide MFS transporter compare
PFLU_RS05885 -1.4 -4.7 recombinase RecA compare
PFLU_RS04470 -1.4 -8.7 histidinol dehydrogenase compare
PFLU_RS27370 -1.4 -8.9 anthranilate phosphoribosyltransferase compare
PFLU_RS08625 -1.4 -3.7 molybdenum cofactor biosynthesis protein B compare
PFLU_RS23380 -1.4 -0.9 HAD-IB family hydrolase compare
PFLU_RS23725 -1.4 -8.9 glucose-6-phosphate dehydrogenase compare
PFLU_RS22070 -1.4 -3.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS06055 -1.4 -1.0 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS28955 -1.3 -8.2 TIGR02449 family protein compare
PFLU_RS24785 -1.3 -7.8 outer membrane protein assembly factor BamB compare
PFLU_RS20285 -1.3 -5.5 MerR family transcriptional regulator compare
PFLU_RS27645 -1.3 -8.8 8-amino-7-oxononanoate synthase compare
PFLU_RS20520 -1.3 -7.2 colicin V production protein CvpA compare
PFLU_RS01390 -1.3 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS01965 -1.3 -1.7 ATP-dependent protease subunit HslV compare
PFLU_RS07215 -1.3 -4.5 hypothetical protein compare
PFLU_RS24025 -1.3 -7.6 quinolinate synthase NadA compare
PFLU_RS02370 -1.3 -7.4 glycosyltransferase compare
PFLU_RS22395 -1.3 -3.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS02045 -1.3 -10.8 glutamate synthase large subunit compare
PFLU_RS02590 -1.3 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS30165 -1.3 -6.4 ParA family protein compare
PFLU_RS28690 -1.3 -8.5 FAD-binding oxidoreductase compare
PFLU_RS24825 -1.2 -3.2 Fe-S cluster assembly protein IscX compare
PFLU_RS04715 -1.2 -3.7 D-alanine--D-alanine ligase compare
PFLU_RS00465 -1.2 -7.7 spore maturation protein compare
PFLU_RS01285 -1.2 -1.5 HAMP domain-containing protein compare
PFLU_RS11980 -1.2 -5.2 precorrin-6A synthase (deacetylating) compare
PFLU_RS05250 -1.2 -3.5 elongation factor 4 compare
PFLU_RS25670 -1.2 -8.5 bifunctional aminoglycoside phosphotransferase/ATP-binding protein compare
PFLU_RS27380 -1.2 -7.7 anthranilate synthase component I compare
PFLU_RS25645 -1.2 -1.3 acetolactate synthase small subunit compare
PFLU_RS24090 -1.2 -3.0 Holliday junction branch migration protein RuvA compare
PFLU_RS04150 -1.2 -4.0 DUF1043 family protein compare
PFLU_RS03980 -1.2 -5.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS30160 -1.2 -2.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS01485 -1.2 -7.8 cellulase compare
PFLU_RS00530 -1.2 -2.3 DUF2388 domain-containing protein compare
PFLU_RS23295 -1.2 -5.8 N-succinylarginine dihydrolase compare
PFLU_RS24670 -1.2 -1.9 HigA family addiction module antidote protein compare
PFLU_RS13350 -1.2 -1.4 ParD-like family protein compare
PFLU_RS24205 -1.1 -1.3 DNA binding protein compare
PFLU_RS01320 -1.1 -6.0 phosphoenolpyruvate carboxykinase compare
PFLU_RS20690 -1.1 -3.2 hypothetical protein compare
PFLU_RS02975 -1.1 -5.5 precorrin-3B synthase compare
PFLU_RS31800 -1.1 -1.1 hypothetical protein compare
PFLU_RS07245 -1.1 -5.7 DegQ family serine endoprotease compare
PFLU_RS07640 -1.1 -6.4 universal stress protein compare
PFLU_RS29760 -1.1 -7.8 phosphate ABC transporter permease PstA compare
PFLU_RS13715 -1.1 -1.1 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS27630 -1.1 -4.1 dethiobiotin synthase compare
PFLU_RS24805 -1.1 -4.4 helix-turn-helix domain-containing protein compare
PFLU_RS20870 -1.1 -2.1 hypothetical protein compare
PFLU_RS29900 -1.1 -6.9 DNA helicase II compare
PFLU_RS04220 -1.1 -5.3 FadR family transcriptional regulator compare
PFLU_RS31100 -1.1 -3.0 preprotein translocase subunit SecG compare
PFLU_RS26950 -1.1 -5.6 outer membrane beta-barrel protein compare
PFLU_RS26020 -1.1 -6.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS14830 -1.1 -5.5 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS13015 -1.1 -3.3 precorrin-4 C(11)-methyltransferase compare
PFLU_RS14810 -1.1 -1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS05630 -1.1 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24695 -1.0 -1.3 PTS glucose transporter subunit IIB compare
PFLU_RS23680 -1.0 -8.1 long-chain fatty acid--CoA ligase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms