Experiment set5IT058 for Pseudomonas fluorescens SBW25-INTG

Compare to:

no extra nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.1 -7.3 tetratricopeptide repeat protein compare
PFLU_RS01645 -6.0 -5.8 S41 family peptidase compare
PFLU_RS14550 -5.0 -6.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS26545 -4.6 -14.6 sel1 repeat family protein compare
PFLU_RS28695 -4.2 -8.1 phosphoglycerate dehydrogenase compare
PFLU_RS24125 -4.1 -4.9 cold-shock protein compare
PFLU_RS22740 -4.0 -2.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS02365 -3.8 -15.0 glycosyltransferase compare
PFLU_RS28645 -3.7 -19.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22095 -3.7 -21.6 GTP diphosphokinase compare
PFLU_RS23065 -3.6 -10.8 phosphate acyltransferase PlsX compare
PFLU_RS29875 -3.4 -17.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS24485 -3.3 -14.9 hypothetical protein compare
PFLU_RS28535 -3.3 -16.9 dihydroxy-acid dehydratase compare
PFLU_RS04070 -3.3 -5.5 peptide chain release factor 3 compare
PFLU_RS23070 -3.3 -2.2 50S ribosomal protein L32 compare
PFLU_RS07695 -3.3 -5.4 beta-N-acetylhexosaminidase compare
PFLU_RS09055 -3.3 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS12975 -3.2 -6.7 DUF934 domain-containing protein compare
PFLU_RS18505 -3.2 -12.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25640 -3.2 -13.3 ketol-acid reductoisomerase compare
PFLU_RS25735 -3.2 -7.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29885 -3.1 -12.4 LysR family transcriptional regulator compare
PFLU_RS04385 -3.1 -12.9 RNase adapter RapZ compare
PFLU_RS29880 -3.0 -15.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25755 -3.0 -4.5 pantoate--beta-alanine ligase compare
PFLU_RS04445 -3.0 -7.3 ABC transporter substrate-binding protein compare
PFLU_RS12980 -2.9 -11.1 nitrite/sulfite reductase compare
PFLU_RS02490 -2.9 -13.6 phosphoserine phosphatase SerB compare
PFLU_RS07785 -2.8 -11.6 VacJ family lipoprotein compare
PFLU_RS04430 -2.8 -8.5 ATP-binding cassette domain-containing protein compare
PFLU_RS26770 -2.8 -15.5 DedA family protein compare
PFLU_RS23585 -2.8 -10.3 GntP family permease compare
PFLU_RS28165 -2.7 -13.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08505 -2.7 -8.9 protease HtpX compare
PFLU_RS01685 -2.7 -6.0 nitrogen regulation protein NR(I) compare
PFLU_RS04440 -2.7 -9.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS23310 -2.6 -10.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS04435 -2.6 -7.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25760 -2.6 -13.8 glucose-6-phosphate isomerase compare
PFLU_RS04465 -2.6 -10.0 ATP phosphoribosyltransferase compare
PFLU_RS27440 -2.5 -8.1 nucleotidyltransferase family protein compare
PFLU_RS13540 -2.5 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS20510 -2.5 -14.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS23590 -2.5 -3.7 gluconokinase compare
PFLU_RS20580 -2.5 -13.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS24085 -2.4 -3.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS16390 -2.4 -3.1 DUF411 domain-containing protein compare
PFLU_RS05630 -2.4 -2.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS23305 -2.4 -11.3 arginine N-succinyltransferase compare
PFLU_RS02590 -2.4 -9.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS26640 -2.3 -12.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS20565 -2.3 -13.9 3-isopropylmalate dehydrogenase compare
PFLU_RS03770 -2.3 -13.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS06320 -2.3 -4.5 OmpH family outer membrane protein compare
PFLU_RS03765 -2.3 -10.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS09980 -2.3 -17.3 peptidase S41 compare
PFLU_RS26735 -2.3 -10.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS24765 -2.3 -16.9 2-isopropylmalate synthase compare
PFLU_RS28725 -2.3 -13.1 DUF2059 domain-containing protein compare
PFLU_RS22105 -2.3 -6.3 cysteine synthase CysM compare
PFLU_RS04715 -2.3 -6.6 D-alanine--D-alanine ligase compare
PFLU_RS28655 -2.3 -13.5 HAD family hydrolase compare
PFLU_RS01900 -2.2 -8.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS16710 -2.2 -4.1 nitrite reductase small subunit NirD compare
PFLU_RS16715 -2.2 -11.5 nitrite reductase large subunit conserved
PFLU_RS22070 -2.2 -5.9 phosphoribosylglycinamide formyltransferase compare
PFLU_RS01895 -2.2 -7.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS08155 -2.2 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS06265 -2.2 -15.8 [protein-PII] uridylyltransferase compare
PFLU_RS04325 -2.2 -14.4 ribonuclease G compare
PFLU_RS20540 -2.1 -11.4 phosphoribosylanthranilate isomerase compare
PFLU_RS00180 -2.1 -8.5 tryptophan synthase subunit beta compare
PFLU_RS27445 -2.1 -13.7 phosphotransferase compare
PFLU_RS28390 -2.1 -9.4 methionine biosynthesis protein MetW compare
PFLU_RS14805 -2.1 -3.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS01610 -2.1 -11.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27365 -2.1 -9.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28965 -2.1 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS29515 -2.1 -11.4 RidA family protein compare
PFLU_RS19175 -2.1 -9.0 trigger factor compare
PFLU_RS25750 -2.1 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS25730 -2.0 -14.5 PAS domain S-box protein compare
PFLU_RS00175 -2.0 -8.8 tryptophan synthase subunit alpha compare
PFLU_RS22595 -2.0 -4.3 OmpA family protein compare
PFLU_RS28650 -2.0 -8.0 RNA pyrophosphohydrolase compare
PFLU_RS04650 -2.0 -14.9 ABC transporter substrate-binding protein compare
PFLU_RS28385 -2.0 -11.9 homoserine O-acetyltransferase compare
PFLU_RS25715 -1.9 -10.3 RNA polymerase-binding protein DksA compare
PFLU_RS07650 -1.9 -12.9 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS06055 -1.9 -1.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25585 -1.9 -1.3 exodeoxyribonuclease V subunit alpha compare
PFLU_RS13350 -1.9 -2.9 ParD-like family protein compare
PFLU_RS02460 -1.9 -10.8 alpha/beta fold hydrolase compare
PFLU_RS27620 -1.8 -14.2 acyl-CoA dehydrogenase compare
PFLU_RS22575 -1.8 -6.6 ANTAR domain-containing protein conserved
PFLU_RS04470 -1.8 -10.6 histidinol dehydrogenase compare
PFLU_RS01965 -1.8 -2.1 ATP-dependent protease subunit HslV compare
PFLU_RS08065 -1.8 -9.0 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS01690 -1.8 -6.3 nitrogen regulation protein NR(II) compare
PFLU_RS02980 -1.8 -2.4 precorrin-8X methylmutase compare
PFLU_RS27650 -1.8 -11.6 biotin synthase BioB compare
PFLU_RS25920 -1.8 -4.0 outer membrane protein assembly factor BamE compare
PFLU_RS01605 -1.8 -7.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS25360 -1.8 -6.4 glutamate 5-kinase compare
PFLU_RS20515 -1.7 -4.5 amidophosphoribosyltransferase compare
PFLU_RS24785 -1.7 -10.2 outer membrane protein assembly factor BamB compare
PFLU_RS21300 -1.7 -6.4 cysteine hydrolase compare
PFLU_RS21495 -1.7 -3.3 TlpA family protein disulfide reductase compare
PFLU_RS24330 -1.7 -6.6 phosphogluconate dehydratase compare
PFLU_RS01390 -1.7 -6.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS20575 -1.7 -5.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02050 -1.7 -12.1 NAD(P)-binding protein compare
PFLU_RS02000 -1.7 -14.8 penicillin-binding protein 1A compare
PFLU_RS02045 -1.7 -14.0 glutamate synthase large subunit compare
PFLU_RS24090 -1.7 -3.4 Holliday junction branch migration protein RuvA compare
PFLU_RS14820 -1.6 -5.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS18615 -1.6 -2.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS27305 -1.6 -7.0 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS24325 -1.6 -10.8 glucokinase compare
PFLU_RS25815 -1.6 -2.0 transcription termination/antitermination protein NusA compare
PFLU_RS01485 -1.6 -10.5 cellulase compare
PFLU_RS03970 -1.6 -7.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25740 -1.6 -5.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS28195 -1.6 -11.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS03980 -1.5 -7.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS07225 -1.5 -11.2 L-aspartate oxidase compare
PFLU_RS31100 -1.5 -3.7 preprotein translocase subunit SecG compare
PFLU_RS29090 -1.5 -6.8 exopolyphosphatase compare
PFLU_RS00415 -1.5 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS26905 -1.5 -8.1 transcriptional regulator NrdR compare
PFLU_RS24015 -1.5 -2.0 cold-shock protein compare
PFLU_RS27370 -1.5 -8.1 anthranilate phosphoribosyltransferase compare
PFLU_RS20285 -1.5 -6.7 MerR family transcriptional regulator compare
PFLU_RS26485 -1.5 -4.2 hypothetical protein compare
PFLU_RS01620 -1.5 -7.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS15410 -1.5 -2.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24095 -1.5 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS08160 -1.5 -6.8 sugar transferase compare
PFLU_RS23725 -1.5 -9.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS24790 -1.5 -4.7 tetratricopeptide repeat protein compare
PFLU_RS23920 -1.5 -2.5 septation protein A compare
PFLU_RS29490 -1.5 -7.6 ribonuclease PH compare
PFLU_RS27635 -1.5 -7.6 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS18670 -1.5 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS07665 -1.4 -1.4 type I DNA topoisomerase compare
PFLU_RS27645 -1.4 -9.1 8-amino-7-oxononanoate synthase compare
PFLU_RS01625 -1.4 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25225 -1.4 -7.6 disulfide bond formation protein B compare
PFLU_RS26490 -1.4 -2.7 cation diffusion facilitator family transporter compare
PFLU_RS24475 -1.4 -11.1 AmpG family muropeptide MFS transporter compare
PFLU_RS03610 -1.4 -5.4 redox-regulated ATPase YchF compare
PFLU_RS29095 -1.4 -12.0 polyphosphate kinase 1 compare
PFLU_RS02790 -1.3 -1.9 TetR family transcriptional regulator compare
PFLU_RS29275 -1.3 -5.5 DUF484 family protein compare
PFLU_RS08135 -1.3 -4.4 glycosyltransferase compare
PFLU_RS02370 -1.3 -7.6 glycosyltransferase compare
PFLU_RS30165 -1.3 -6.8 ParA family protein compare
PFLU_RS27630 -1.3 -4.3 dethiobiotin synthase compare
PFLU_RS18530 -1.3 -3.9 DNA translocase FtsK compare
PFLU_RS18420 -1.3 -1.2 hypothetical protein compare
PFLU_RS28690 -1.3 -8.4 FAD-binding oxidoreductase compare
PFLU_RS22580 -1.3 -8.3 NarK/NasA family nitrate transporter conserved
PFLU_RS04150 -1.3 -3.6 DUF1043 family protein compare
PFLU_RS04315 -1.3 -3.0 rod shape-determining protein MreD compare
PFLU_RS22395 -1.2 -3.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS04945 -1.2 -2.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS18645 -1.2 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS08665 -1.2 -1.6 cytochrome c maturation protein CcmE compare
PFLU_RS21665 -1.2 -5.4 MinD/ParA family protein compare
PFLU_RS29760 -1.2 -7.9 phosphate ABC transporter permease PstA compare
PFLU_RS02215 -1.2 -2.3 hypothetical protein compare
PFLU_RS06555 -1.2 -7.3 OmpA family protein compare
PFLU_RS24025 -1.2 -7.3 quinolinate synthase NadA compare
PFLU_RS24145 -1.2 -4.7 mechanosensitive ion channel compare
PFLU_RS28955 -1.1 -7.5 TIGR02449 family protein compare
PFLU_RS25670 -1.1 -8.3 bifunctional aminoglycoside phosphotransferase/ATP-binding protein compare
PFLU_RS01650 -1.1 -5.1 murein hydrolase activator EnvC compare
PFLU_RS01315 -1.1 -1.8 Hsp33 family molecular chaperone HslO compare
PFLU_RS08410 -1.1 -5.1 HTH-type transcriptional regulator CysB compare
PFLU_RS02565 -1.1 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS04220 -1.1 -6.0 FadR family transcriptional regulator compare
PFLU_RS01960 -1.1 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS08625 -1.1 -3.3 molybdenum cofactor biosynthesis protein B compare
PFLU_RS27475 -1.1 -4.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS07670 -1.1 -5.7 hypothetical protein compare
PFLU_RS00465 -1.1 -7.7 spore maturation protein compare
PFLU_RS08630 -1.1 -4.8 molybdopterin molybdotransferase MoeA compare
PFLU_RS28320 -1.1 -1.9 glutathione synthase compare
PFLU_RS07805 -1.1 -8.6 transaldolase compare
PFLU_RS18655 -1.1 -1.9 NADH-quinone oxidoreductase subunit J compare
PFLU_RS10120 -1.0 -2.7 hypothetical protein compare
PFLU_RS23130 -1.0 -5.7 response regulator transcription factor compare
PFLU_RS20625 -1.0 -1.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS18585 -1.0 -2.0 high frequency lysogenization protein HflD compare
PFLU_RS07255 -1.0 -3.1 sulfurtransferase TusA family protein compare
PFLU_RS24255 -1.0 -6.6 pyruvate kinase compare
PFLU_RS14830 -1.0 -5.4 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS09305 -1.0 -7.4 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms