Experiment set5IT058 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

Methyl beta-D-glucopyranoside carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS10740 +5.1 38.3 DNA-binding response regulator compare
CA265_RS10745 +4.9 37.4 diguanylate cyclase compare
CA265_RS08905 +4.1 18.7 DNA helicase RecQ compare
CA265_RS23145 +4.0 14.9 hypothetical protein compare
CA265_RS04990 +2.9 12.6 short chain dehydrogenase compare
CA265_RS15200 +2.8 13.3 hypothetical protein compare
CA265_RS23510 +2.5 7.3 energy transducer TonB compare
CA265_RS18235 +2.4 13.5 peptidase compare
CA265_RS22690 +2.4 14.0 hypothetical protein compare
CA265_RS04640 +2.3 12.6 efflux transporter periplasmic adaptor subunit compare
CA265_RS23960 +2.0 5.0 glycine cleavage system protein T compare
CA265_RS21060 +2.0 4.9 hypothetical protein compare
CA265_RS04645 +1.9 12.7 cation transporter compare
CA265_RS02760 +1.9 3.8 hypothetical protein compare
CA265_RS04635 +1.9 15.7 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS19940 +1.9 15.2 hypothetical protein compare
CA265_RS16005 +1.8 6.4 hypothetical protein compare
CA265_RS19945 +1.8 6.5 hypothetical protein compare
CA265_RS04330 +1.8 9.3 transcriptional regulator compare
CA265_RS01975 +1.7 8.0 cell division protein compare
CA265_RS02200 +1.7 11.8 NUDIX hydrolase compare
CA265_RS15195 +1.7 6.9 hypothetical protein compare
CA265_RS19540 +1.7 13.5 tail-specific protease compare
CA265_RS15370 +1.6 3.1 glycosyl hydrolase compare
CA265_RS17455 +1.6 5.9 hypothetical protein compare
CA265_RS12890 +1.5 9.6 hypothetical protein compare
CA265_RS00665 +1.5 3.9 lysine transporter LysE compare
CA265_RS17495 +1.4 2.0 lipoprotein signal peptidase compare
CA265_RS14550 +1.3 8.7 hypothetical protein compare
CA265_RS15895 +1.3 2.7 hypothetical protein compare
CA265_RS23515 +1.3 2.9 hypothetical protein compare
CA265_RS14530 +1.3 2.8 nicotinate-nucleotide diphosphorylase (carboxylating) compare
CA265_RS20355 +1.3 3.0 hypothetical protein compare
CA265_RS06115 +1.3 8.1 DNA mismatch repair protein MutT compare
CA265_RS14935 +1.3 11.4 hypothetical protein compare
CA265_RS17680 +1.3 6.0 hypothetical protein compare
CA265_RS16295 +1.2 8.6 LacI family transcriptional regulator compare
CA265_RS22450 +1.2 2.6 GntR family transcriptional regulator compare
CA265_RS18125 +1.2 6.2 gliding motility protein GldL compare
CA265_RS09140 +1.2 6.3 MerR family transcriptional regulator compare
CA265_RS21715 +1.2 6.4 hypothetical protein compare
CA265_RS00270 +1.1 1.7 hypothetical protein compare
CA265_RS13695 +1.1 4.1 hypothetical protein compare
CA265_RS04140 +1.1 8.7 glycogen synthase compare
CA265_RS00570 +1.1 6.7 hypothetical protein compare
CA265_RS23520 +1.1 8.4 phosphate ABC transporter substrate-binding protein compare
CA265_RS04145 +1.1 8.3 glucose-1-phosphate adenylyltransferase compare
CA265_RS00585 +1.1 9.6 translocation/assembly module TamB compare
CA265_RS13970 +1.1 8.9 hypothetical protein compare
CA265_RS19030 +1.1 5.6 hypothetical protein compare
CA265_RS15900 +1.1 2.7 hypothetical protein compare
CA265_RS04655 +1.1 5.7 DNA-binding response regulator compare
CA265_RS24230 +1.1 7.6 RNA polymerase sigma factor compare
CA265_RS15335 +1.1 4.6 NAD-dependent epimerase compare
CA265_RS14745 +1.1 3.7 biopolymer transporter ExbD compare
CA265_RS15070 +1.0 3.2 hypothetical protein compare
CA265_RS04650 +1.0 7.9 two-component sensor histidine kinase compare
CA265_RS08755 +1.0 6.1 response regulator compare
CA265_RS04295 +1.0 2.0 transcriptional regulator compare
CA265_RS14845 +1.0 5.4 transcriptional regulator compare
CA265_RS01960 +1.0 1.2 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS18120 +1.0 7.6 gliding motility protein GldM compare
CA265_RS08895 +1.0 6.4 mannose-1-phosphate guanylyltransferase compare
CA265_RS03475 +1.0 7.4 glutamate dehydrogenase compare
CA265_RS14750 +1.0 3.8 energy transducer TonB compare
CA265_RS08775 +0.9 1.8 hypothetical protein compare
CA265_RS23190 +0.9 2.5 transcription elongation factor GreA compare
CA265_RS18145 +0.9 3.8 hypothetical protein compare
CA265_RS14940 +0.9 2.4 hypothetical protein compare
CA265_RS23635 +0.9 7.2 gliding motility lipoprotein GldJ compare
CA265_RS17710 +0.9 6.2 hypothetical protein compare
CA265_RS18090 +0.9 7.8 gliding motility protein compare
CA265_RS09425 +0.9 2.5 hypothetical protein compare
CA265_RS02605 +0.9 5.4 hypothetical protein compare
CA265_RS09725 +0.9 8.3 tolB protein precursor compare
CA265_RS04335 +0.9 4.9 hypothetical protein compare
CA265_RS15315 +0.9 2.8 xylosidase compare
CA265_RS15615 +0.9 3.4 malate dehydrogenase compare
CA265_RS23140 +0.9 2.5 hypothetical protein compare
CA265_RS08880 +0.9 5.4 chromate transporter compare
CA265_RS23505 +0.9 2.8 biopolymer transporter ExbD compare
CA265_RS01100 +0.9 5.6 transcriptional regulator compare
CA265_RS19640 +0.9 2.7 hypothetical protein compare
CA265_RS06595 +0.9 1.7 Arc family DNA binding domain-containing protein compare
CA265_RS17685 +0.9 5.1 hypothetical protein compare
CA265_RS06585 +0.8 5.5 hypothetical protein compare
CA265_RS17720 +0.8 6.9 hypothetical protein compare
CA265_RS15310 +0.8 3.5 beta-glucosidase compare
CA265_RS17390 +0.8 4.6 PadR family transcriptional regulator compare
CA265_RS15000 +0.8 5.9 amino acid permease compare
CA265_RS09020 +0.8 3.8 hypothetical protein compare
CA265_RS02145 +0.8 6.4 1,4-alpha-glucan branching enzyme compare
CA265_RS18260 +0.8 1.2 hypothetical protein compare
CA265_RS15115 +0.8 5.3 porin compare
CA265_RS24720 +0.8 6.8 multidrug transporter compare
CA265_RS20640 +0.8 4.7 hypothetical protein compare
CA265_RS14705 +0.8 6.1 hypothetical protein compare
CA265_RS15085 +0.8 4.9 hypothetical protein compare
CA265_RS23800 +0.8 3.6 methyltransferase type 12 compare
CA265_RS00125 +0.8 5.1 polysaccharide deacetylase compare
CA265_RS03255 +0.8 4.8 glycerophosphodiester phosphodiesterase compare
CA265_RS18115 +0.8 4.8 gliding motility protein GldN compare
CA265_RS18130 +0.8 5.4 gliding motility-associated lipoprotein compare
CA265_RS20990 +0.8 1.6 sugar transporter compare
CA265_RS25215 +0.8 2.3 MBL fold hydrolase compare
CA265_RS06175 +0.8 1.6 hypothetical protein compare
CA265_RS15035 +0.8 2.6 prevent-host-death protein compare
CA265_RS06365 +0.8 5.7 hypothetical protein compare
CA265_RS04155 +0.7 5.6 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase compare
CA265_RS13240 +0.7 2.2 preprotein translocase subunit YajC compare
CA265_RS23265 +0.7 2.0 iron-binding protein compare
CA265_RS20880 +0.7 2.9 hypothetical protein compare
CA265_RS21000 +0.7 3.4 ribosome silencing factor compare
CA265_RS20350 +0.7 3.5 gliding motility lipoprotein GldH compare
CA265_RS24560 +0.7 4.7 DUF5007 domain-containing protein compare
CA265_RS08890 +0.7 2.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA265_RS03115 +0.7 2.3 peroxiredoxin compare
CA265_RS13685 +0.7 4.7 hypothetical protein compare
CA265_RS15270 +0.7 2.6 hypothetical protein compare
CA265_RS19500 +0.7 3.1 methyltransferase type 11 compare
CA265_RS17705 +0.7 4.9 hypothetical protein compare
CA265_RS00305 +0.7 3.2 transcriptional regulator compare
CA265_RS05655 +0.7 4.4 hypothetical protein compare
CA265_RS24355 +0.7 1.6 transcriptional regulator compare
CA265_RS10905 +0.6 3.6 iron-dependent repressor compare
CA265_RS03295 +0.6 4.7 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS07865 +0.6 3.8 aquaporin compare
CA265_RS04980 +0.6 2.2 recombination protein RecR compare
CA265_RS01050 +0.6 5.2 sodium:solute symporter compare
CA265_RS25030 +0.6 1.5 hypothetical protein compare
CA265_RS20175 +0.6 1.8 thiamine-phosphate diphosphorylase compare
CA265_RS21225 +0.6 4.6 hypothetical protein compare
CA265_RS07785 +0.6 2.6 hypothetical protein compare
CA265_RS15330 +0.6 1.6 YebC/PmpR family DNA-binding transcriptional regulator compare
CA265_RS09320 +0.6 1.7 hypothetical protein compare
CA265_RS13555 +0.6 3.2 hypothetical protein compare
CA265_RS19140 +0.6 1.4 tRNA-Ile compare
CA265_RS22805 +0.6 3.3 glycosyl transferase compare
CA265_RS18945 +0.6 3.7 LacI family transcriptional regulator compare
CA265_RS22460 +0.6 2.7 ABC transporter ATP-binding protein compare
CA265_RS02425 +0.6 1.8 GTP cyclohydrolase compare
CA265_RS20610 +0.6 1.8 hypothetical protein compare
CA265_RS06900 +0.6 3.0 hypothetical protein compare
CA265_RS04010 +0.6 4.1 hypothetical protein compare
CA265_RS24790 +0.6 3.9 peptidylprolyl isomerase compare
CA265_RS09415 +0.6 0.9 hypothetical protein compare
CA265_RS19350 +0.6 3.8 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare
CA265_RS03260 +0.6 4.1 multidrug ABC transporter ATP-binding protein compare
CA265_RS02550 +0.6 1.4 tRNA-Phe compare
CA265_RS19380 +0.6 3.2 beta-carotene 15,15'-monooxygenase compare
CA265_RS22455 +0.6 3.2 hypothetical protein compare
CA265_RS15905 +0.6 3.5 RNA polymerase sigma factor compare
CA265_RS19630 +0.6 3.6 DNA polymerase I compare
CA265_RS19575 +0.6 1.5 glycoside hydrolase compare
CA265_RS23010 +0.6 4.8 hydrophobe/amphiphile efflux-1 family RND transporter compare
CA265_RS25150 +0.6 2.2 hypothetical protein compare
CA265_RS12985 +0.6 1.8 hypothetical protein compare
CA265_RS10435 +0.6 3.1 RNA-binding protein compare
CA265_RS24840 +0.6 4.0 hypothetical protein compare
CA265_RS19910 +0.6 2.8 GDSL family lipase compare
CA265_RS11800 +0.5 3.5 hypothetical protein compare
CA265_RS23030 +0.5 1.2 serine protease compare
CA265_RS21415 +0.5 2.4 AraC family transcriptional regulator compare
CA265_RS14740 +0.5 2.7 biopolymer transporter ExbB compare
CA265_RS14670 +0.5 2.6 hypothetical protein compare
CA265_RS21515 +0.5 4.3 alanine dehydrogenase compare
CA265_RS17120 +0.5 4.0 hypothetical protein compare
CA265_RS10310 +0.5 4.0 GntR family transcriptional regulator compare
CA265_RS24995 +0.5 3.0 hypothetical protein compare
CA265_RS15640 +0.5 4.1 sugar kinase compare
CA265_RS09740 +0.5 0.7 transcriptional regulator compare
CA265_RS06180 +0.5 2.0 hypothetical protein compare
CA265_RS04820 +0.5 3.0 GntR family transcriptional regulator compare
CA265_RS19465 +0.5 1.4 protein tyrosine phosphatase compare
CA265_RS12535 +0.5 3.5 RNA polymerase compare
CA265_RS04465 +0.5 2.5 PspC family transcriptional regulator compare
CA265_RS06870 +0.5 4.0 efflux transporter periplasmic adaptor subunit compare
CA265_RS16470 +0.5 2.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS23305 +0.5 0.8 hypothetical protein compare
CA265_RS19655 +0.5 2.1 carboxymuconolactone decarboxylase family protein compare
CA265_RS13510 +0.5 3.1 TetR family transcriptional regulator compare
CA265_RS23015 +0.5 3.5 efflux transporter periplasmic adaptor subunit compare
CA265_RS21910 +0.5 3.6 glycoside hydrolase compare
CA265_RS19800 +0.5 2.9 GLPGLI family protein compare
CA265_RS11090 +0.5 3.7 hypothetical protein compare
CA265_RS24385 +0.5 1.2 GNAT family N-acetyltransferase compare
CA265_RS01165 +0.5 1.6 hypothetical protein compare
CA265_RS11000 +0.5 1.2 large-conductance mechanosensitive channel compare
CA265_RS04695 +0.5 2.7 hypothetical protein compare
CA265_RS17595 +0.5 2.9 MarR family transcriptional regulator compare
CA265_RS17585 +0.5 3.0 acetyl-CoA acetyltransferase compare
CA265_RS10615 +0.5 2.8 diacylglycerol kinase compare
CA265_RS17565 +0.5 1.8 hypothetical protein compare
CA265_RS19980 +0.5 2.5 hypothetical protein compare
CA265_RS15210 +0.5 2.2 DNA-binding response regulator compare
CA265_RS13125 +0.5 2.3 GNAT family N-acetyltransferase compare
CA265_RS19740 +0.5 1.9 gliding motility lipoprotein GldD compare
CA265_RS00400 +0.5 3.3 hypothetical protein compare
CA265_RS09420 +0.5 1.2 hypothetical protein compare
CA265_RS17940 +0.5 2.2 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Methyl beta-D-glucopyranoside in Pedobacter sp. GW460-11-11-14-LB5

For carbon source Methyl beta-D-glucopyranoside across organisms