Experiment set5IT058 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Doxycycline hyclate 0.0001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_2120 +1.4 4.4 hypothetical protein compare
Ga0059261_2119 +1.3 5.3 Flagellar motor protein compare
Ga0059261_3938 +1.2 8.7 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_2118 +1.2 7.1 flagellar motor stator protein MotA compare
Ga0059261_3937 +1.2 10.0 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_2128 +1.1 5.0 Predicted membrane protein compare
Ga0059261_3948 +1.1 3.9 type II secretion system protein H compare
Ga0059261_2121 +1.1 8.1 hypothetical protein compare
Ga0059261_3940 +0.9 5.7 hypothetical protein compare
Ga0059261_2125 +0.8 5.6 ATP-dependent helicase HrpB compare
Ga0059261_1904 +0.8 2.2 Asparaginase compare
Ga0059261_3939 +0.8 4.7 transcriptional regulator, TetR family compare
Ga0059261_2117 +0.8 6.1 Transposase and inactivated derivatives compare
Ga0059261_2116 +0.7 6.4 Integrase compare
Ga0059261_2229 +0.7 1.9 Predicted transcriptional regulators compare
Ga0059261_1381 +0.7 4.0 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2124 +0.7 4.3 hypothetical protein compare
Ga0059261_1075 +0.7 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_1035 +0.7 2.1 hypothetical protein compare
Ga0059261_1791 +0.7 1.7 hypothetical protein compare
Ga0059261_3783 +0.7 3.9 hypothetical protein compare
Ga0059261_1545 +0.7 2.8 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_2129 +0.7 4.2 Beta-propeller domains of methanol dehydrogenase type compare
Ga0059261_2402 +0.7 5.0 phage portal protein, HK97 family compare
Ga0059261_2127 +0.7 4.4 NUDIX domain compare
Ga0059261_3144 +0.6 1.9 Transcriptional regulator compare
Ga0059261_2068 +0.6 3.8 hypothetical protein compare
Ga0059261_3569 +0.6 2.2 chaperone protein DnaJ compare
Ga0059261_0242 +0.6 2.0 hypothetical protein compare
Ga0059261_1596 +0.6 2.4 CBS domain compare
Ga0059261_2115 +0.6 5.2 transcriptional regulator, TetR family compare
Ga0059261_2130 +0.6 4.6 Uncharacterized conserved protein compare
Ga0059261_3941 +0.6 5.5 Predicted phosphatase compare
Ga0059261_0087 +0.6 1.5 hypothetical protein compare
Ga0059261_0957 +0.6 1.9 Protein of unknown function (DUF2798) compare
Ga0059261_2058 +0.6 4.6 Flagellar capping protein compare
Ga0059261_2408 +0.6 4.9 Acetyltransferases compare
Ga0059261_2114 +0.6 5.5 Outer membrane receptor proteins, mostly Fe transport compare
Ga0059261_2406 +0.6 4.7 Glutathione-dependent formaldehyde-activating enzyme compare
Ga0059261_2065 +0.6 3.5 Flagellar motor switch protein compare
Ga0059261_3203 +0.6 4.7 ABC-type multidrug transport system, permease component compare
Ga0059261_2407 +0.6 4.0 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_2400 +0.6 2.8 Uncharacterized conserved protein compare
Ga0059261_0660 +0.6 3.3 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Ga0059261_3952 +0.6 4.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Ga0059261_2132 +0.6 1.4 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_1380 +0.6 4.5 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2063 +0.5 2.2 Flagellar biosynthesis protein, FliO compare
Ga0059261_2403 +0.5 2.7 hypothetical protein compare
Ga0059261_2399 +0.5 3.9 PilZ domain compare
Ga0059261_2422 +0.5 3.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_2396 +0.5 2.9 hypothetical protein compare
Ga0059261_1499 +0.5 2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ga0059261_2056 +0.5 3.8 Predicted acyl-CoA transferases/carnitine dehydratase compare
Ga0059261_3951 +0.5 3.9 Type II secretory pathway, component PulM compare
Ga0059261_1831 +0.5 2.1 hypothetical protein compare
Ga0059261_3216 +0.5 2.4 Acetyltransferases compare
Ga0059261_2404 +0.5 3.9 Protein of unknown function (DUF2793)/Caudovirus prohead protease compare
Ga0059261_4032 +0.5 2.8 Sensors of blue-light using FAD compare
Ga0059261_2691 +0.5 2.3 Zn-dependent dipeptidase, microsomal dipeptidase homolog compare
Ga0059261_2113 +0.5 4.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_2020 +0.5 4.1 Glycosyltransferase compare
Ga0059261_0889 +0.5 0.9 Cold shock proteins compare
Ga0059261_3206 +0.5 2.6 ornithine carbamoyltransferase compare
Ga0059261_2980 +0.5 4.4 Outer membrane protein compare
Ga0059261_2102 +0.5 2.0 hypothetical protein compare
Ga0059261_2401 +0.5 3.8 Spermine/spermidine synthase compare
Ga0059261_0412 +0.5 1.8 DNA-binding HTH domain-containing proteins compare
Ga0059261_0973 +0.5 1.9 hypothetical protein compare
Ga0059261_1265 +0.5 1.3 hypothetical protein compare
Ga0059261_0747 +0.5 2.7 Protein of unknown function (DUF2975) compare
Ga0059261_2074 +0.5 3.6 Sigma-54 interaction domain/Bacterial regulatory protein, Fis family compare
Ga0059261_3759 +0.5 1.7 hypothetical protein compare
Ga0059261_3205 +0.5 3.5 transaminase, acetylornithine/succinylornithine family compare
Ga0059261_4054 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2411 +0.5 4.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_2084 +0.5 2.4 FlgN protein compare
Ga0059261_2745 +0.5 3.8 Myo-inositol-1-phosphate synthase compare
Ga0059261_3755 +0.5 1.3 Protein of unknown function (DUF2798) compare
Ga0059261_2131 +0.5 2.6 large conductance mechanosensitive channel protein compare
Ga0059261_2126 +0.4 2.3 ETC complex I subunit conserved region compare
Ga0059261_1351 +0.4 3.6 signal peptide peptidase SppA, 67K type compare
Ga0059261_3714 +0.4 2.3 Acyl-CoA hydrolase compare
Ga0059261_2694 +0.4 1.8 RadC-like JAB domain compare
Ga0059261_3953 +0.4 3.6 Type II secretory pathway, component PulF compare
Ga0059261_1799 +0.4 1.0 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_2077 +0.4 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1406 +0.4 1.1 Acetyltransferase (GNAT) family compare
Ga0059261_3949 +0.4 3.0 type II secretion system protein G compare
Ga0059261_2981 +0.4 3.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_1569 +0.4 1.7 Response regulator receiver domain compare
Ga0059261_3451 +0.4 1.1 hypothetical protein compare
Ga0059261_3944 +0.4 2.5 hypothetical protein compare
Ga0059261_3950 +0.4 3.5 Type II secretion system (T2SS), protein L compare
Ga0059261_2111 +0.4 3.7 Phosphodiesterase/alkaline phosphatase D compare
Ga0059261_3931 +0.4 3.2 Predicted membrane protein/domain compare
Ga0059261_0955 +0.4 2.4 PilZ domain compare
Ga0059261_3784 +0.4 3.4 DNA mismatch repair protein MutS compare
Ga0059261_2112 +0.4 3.4 Transcriptional regulator compare
Ga0059261_3959 +0.4 1.2 MerC mercury resistance protein compare
Ga0059261_0340 +0.4 1.7 Bacterial protein of unknown function (DUF937) compare
Ga0059261_2059 +0.4 3.2 Flagellar biosynthesis pathway, component FlhB compare
Ga0059261_3934 +0.4 3.0 MoxR-like ATPases compare
Ga0059261_2108 +0.4 3.0 acetyl-CoA acetyltransferases compare
Ga0059261_2415 +0.4 3.1 Phytoene/squalene synthetase compare
Ga0059261_1449 +0.4 2.6 Glycine zipper 2TM domain compare
Ga0059261_4007 +0.4 1.0 Transcriptional regulators compare
Ga0059261_2098 +0.4 2.4 flagellar hook-associated protein FlgK compare
Ga0059261_3271 +0.4 0.7 arsenate reductase (glutaredoxin) compare
Ga0059261_2053 +0.4 2.7 Mg2+ and Co2+ transporters compare
Ga0059261_2072 +0.4 2.7 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Ga0059261_2018 +0.4 2.9 hypothetical protein compare
Ga0059261_2365 +0.4 1.6 Mu-like prophage FluMu protein gp41 compare
Ga0059261_3815 +0.4 2.0 hypothetical protein compare
Ga0059261_2136 +0.4 3.1 Transcriptional regulator compare
Ga0059261_2309 +0.4 1.9 transcriptional regulator, LacI family compare
Ga0059261_3928 +0.4 1.8 Predicted thioesterase compare
Ga0059261_2070 +0.4 2.6 Flagellar assembly protein FliH compare
Ga0059261_2412 +0.4 3.2 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components compare
Ga0059261_3197 +0.4 2.1 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_3193 +0.4 3.4 Dolichyl-phosphate-mannose-protein mannosyltransferase compare
Ga0059261_1253 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_1018 +0.4 2.1 hypothetical protein compare
Ga0059261_3957 +0.4 1.8 prepilin-type N-terminal cleavage/methylation domain compare
Ga0059261_3935 +0.4 2.9 hypothetical protein compare
Ga0059261_0980 +0.4 2.4 polyhydroxyalkanoate synthesis repressor PhaR compare
Ga0059261_2416 +0.4 2.2 TIGR00730 family protein compare
Ga0059261_1717 +0.4 1.5 hypothetical protein compare
Ga0059261_2057 +0.4 2.5 flagellar biosynthetic protein FliS compare
Ga0059261_1496 +0.4 1.5 uroporphyrin-III C-methyltransferase compare
Ga0059261_3932 +0.4 2.7 Uncharacterized membrane protein compare
Ga0059261_0982 +0.4 2.6 acetyl-CoA acetyltransferases compare
Ga0059261_0316 +0.4 2.1 hypothetical protein compare
Ga0059261_0380 +0.3 2.1 Uncharacterized conserved small protein compare
Ga0059261_1138 +0.3 1.4 hypothetical protein compare
Ga0059261_2325 +0.3 1.9 MerR HTH family regulatory protein compare
Ga0059261_3201 +0.3 3.0 Metallo-beta-lactamase superfamily compare
Ga0059261_3954 +0.3 2.6 Homoserine acetyltransferase compare
Ga0059261_2429 +0.3 1.5 2'-5' RNA ligase superfamily compare
Ga0059261_3896 +0.3 1.3 integration host factor, beta subunit compare
Ga0059261_2987 +0.3 1.0 hypothetical protein compare
Ga0059261_0267 +0.3 1.1 Predicted membrane protein compare
Ga0059261_1257 +0.3 1.9 Uncharacterized iron-regulated protein compare
Ga0059261_3971 +0.3 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_3412 +0.3 2.5 Predicted transmembrane transcriptional regulator (anti-sigma factor) compare
Ga0059261_2019 +0.3 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_0155 +0.3 2.6 peroxiredoxin compare
Ga0059261_1021 +0.3 1.2 hypothetical protein compare
Ga0059261_2466 +0.3 2.3 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_0059 +0.3 1.0 Stress-induced morphogen (activity unknown) compare
Ga0059261_2110 +0.3 3.0 Outer membrane receptor for ferrienterochelin and colicins compare
Ga0059261_2134 +0.3 2.4 Beta-lactamase class C and other penicillin binding proteins compare
Ga0059261_1181 +0.3 1.2 hypothetical protein compare
Ga0059261_2397 +0.3 2.3 Uncharacterized conserved protein compare
Ga0059261_3441 +0.3 1.2 hypothetical protein compare
Ga0059261_0846 +0.3 1.8 Zn-dependent alcohol dehydrogenases, class III compare
Ga0059261_2144 +0.3 1.9 thymidine kinase (EC 2.7.1.21) compare
Ga0059261_2135 +0.3 2.4 Zn-dependent alcohol dehydrogenases compare
Ga0059261_1472 +0.3 0.5 hypothetical protein compare
Ga0059261_0350 +0.3 2.1 Bacterial SH3 domain compare
Ga0059261_3637 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_2051 +0.3 2.5 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
Ga0059261_3701 +0.3 2.4 Pirin-related protein compare
Ga0059261_2393 +0.3 2.7 Predicted membrane protein compare
Ga0059261_3013 +0.3 1.2 transcriptional regulator, ArsR family compare
Ga0059261_1803 +0.3 1.5 Domain of unknown function (DUF4136) compare
Ga0059261_1752 +0.3 2.0 Methyltransferase domain compare
Ga0059261_3316 +0.3 1.9 hypothetical protein compare
Ga0059261_1185 +0.3 1.2 Thiolase, C-terminal domain compare
Ga0059261_0563 +0.3 2.0 Lysophospholipase L1 and related esterases compare
Ga0059261_0344 +0.3 1.2 Molecular chaperone (small heat shock protein) compare
Ga0059261_1759 +0.3 1.1 Phosphoadenosine phosphosulfate reductase family compare
Ga0059261_3435 +0.3 2.2 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_2744 +0.3 2.4 CDP-alcohol phosphatidyltransferase compare
Ga0059261_1772 +0.3 1.0 MobA/MobL family compare
Ga0059261_0596 +0.3 1.6 Cation efflux family compare
Ga0059261_0722 +0.3 1.8 L-aminopeptidase/D-esterase compare
Ga0059261_3165 +0.3 1.5 PEP phosphonomutase and related enzymes compare
Ga0059261_3016 +0.3 1.0 hypothetical protein compare
Ga0059261_2050 +0.3 0.9 hypothetical protein compare
Ga0059261_2423 +0.3 2.5 Outer membrane protein V compare
Ga0059261_3827 +0.3 1.7 Response regulator receiver domain compare
Ga0059261_3171 +0.3 2.0 Domain of unknown function (DUF4126) compare
Ga0059261_3188 +0.3 2.5 Acetyltransferase (GNAT) domain compare
Ga0059261_3762 +0.3 1.6 Uncharacterized conserved protein compare
Ga0059261_3992 +0.3 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_4196 +0.3 2.3 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_2419 +0.3 2.1 Glutathione S-transferase compare
Ga0059261_3224 +0.3 2.0 Acyl dehydratase compare
Ga0059261_2351 +0.3 1.0 hypothetical protein compare
Ga0059261_3933 +0.3 2.1 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Ga0059261_4143 +0.3 1.6 hypothetical protein compare
Ga0059261_3198 +0.3 2.1 Beta-lactamase class A compare
Ga0059261_0609 +0.3 1.2 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_4013 +0.3 0.8 hypothetical protein compare
Ga0059261_2097 +0.3 1.0 Rod binding protein compare
Ga0059261_0633 +0.3 0.6 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_0975 +0.3 1.7 Flp pilus assembly protein, ATPase CpaF compare
Ga0059261_3169 +0.3 1.7 phosphoglycerate mutase, BPG-dependent, family 1 compare
Ga0059261_3936 +0.3 1.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Doxycycline hyclate in Sphingomonas koreensis DSMZ 15582

For stress Doxycycline hyclate across organisms