Experiment set5IT058 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with PEG 1500 17 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS14400 +1.3 10.6 acetyltransferase compare
BBR_RS16220 +1.1 1.6 DNA cytosine methyltransferase compare
BBR_RS18175 +1.0 1.7 GTP cyclohydrolase I FolE compare
BBR_RS18755 +0.9 2.1 30S ribosome-binding factor RbfA compare
BBR_RS10285 +0.8 1.8 membrane protein compare
BBR_RS19270 +0.8 1.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS20980 +0.7 1.7 hypothetical protein compare
BBR_RS20690 +0.7 2.4 hypothetical protein compare
BBR_RS11675 +0.7 1.4 hypothetical protein compare
BBR_RS21025 +0.6 3.4 hypothetical protein compare
BBR_RS14220 +0.6 4.1 phosphomannomutase compare
BBR_RS18170 +0.6 1.9 dihydropteroate synthase compare
BBR_RS17650 +0.6 1.1 cell filamentation protein Fic compare
BBR_RS13910 +0.5 0.5 arginine repressor compare
BBR_RS18645 +0.5 4.5 DNA-binding response regulator compare
BBR_RS21060 +0.5 2.1 hypothetical protein compare
BBR_RS12515 +0.5 3.9 LacI family transcriptional regulator compare
BBR_RS10740 +0.5 1.3 tRNA-Gly compare
BBR_RS20795 +0.5 1.1 cystathionine gamma-lyase compare
BBR_RS17775 +0.5 2.4 LacI family DNA-binding transcriptional regulator compare
BBR_RS19240 +0.5 4.5 LacI family transcriptional regulator compare
BBR_RS20925 +0.5 1.1 amino acid permease compare
BBR_RS20635 +0.5 2.4 hypothetical protein compare
BBR_RS11640 +0.5 0.9 hypothetical protein compare
BBR_RS15670 +0.5 1.9 adenine phosphoribosyltransferase compare
BBR_RS14610 +0.5 1.3 DNA-binding response regulator compare
BBR_RS10890 +0.5 3.8 LacI family transcriptional regulator compare
BBR_RS12770 +0.5 1.8 hypothetical protein compare
BBR_RS20955 +0.5 1.1 hypothetical protein compare
BBR_RS15845 +0.5 0.6 hypothetical protein compare
BBR_RS11145 +0.5 0.9 hypothetical protein compare
BBR_RS12245 +0.5 1.3 polyribonucleotide nucleotidyltransferase compare
BBR_RS20780 +0.4 1.8 hypothetical protein compare
BBR_RS13580 +0.4 2.1 nodulation protein L compare
BBR_RS14985 +0.4 0.9 ATP-dependent DNA helicase PcrA compare
BBR_RS13215 +0.4 1.4 hypothetical protein compare
BBR_RS14895 +0.4 2.9 DUF47 domain-containing protein compare
BBR_RS17085 +0.4 2.6 KR domain-containing protein compare
BBR_RS16060 +0.4 1.5 hypothetical protein compare
BBR_RS12370 +0.4 0.6 cell division protein compare
BBR_RS13255 +0.4 1.5 hypothetical protein compare
BBR_RS13420 +0.4 0.9 DUF4230 domain-containing protein compare
BBR_RS20885 +0.4 0.6 hypothetical protein compare
BBR_RS15305 +0.4 1.9 hypothetical protein compare
BBR_RS17945 +0.4 2.7 nucleoside deoxyribosyltransferase compare
BBR_RS20170 +0.4 3.5 LacI family transcriptional regulator compare
BBR_RS20320 +0.4 3.7 PTS ascorbate transporter subunit IIC compare
BBR_RS14335 +0.4 1.1 hypothetical protein compare
BBR_RS18035 +0.4 1.2 oligoribonuclease compare
BBR_RS20330 +0.4 3.2 PTS sugar transporter subunit IIA compare
BBR_RS13305 +0.4 1.7 transcriptional repressor compare
BBR_RS17520 +0.4 2.6 hypothetical protein compare
BBR_RS16965 +0.4 0.5 ATP-dependent DNA helicase compare
BBR_RS20865 +0.4 1.2 glycogen phosphorylase compare
BBR_RS18495 +0.4 2.6 ROK family protein compare
BBR_RS13705 +0.4 2.1 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS14160 +0.4 1.5 peptidylprolyl isomerase compare
BBR_RS15945 +0.4 1.6 hypothetical protein compare
BBR_RS20920 +0.4 1.7 hypothetical protein compare
BBR_RS14365 +0.4 2.1 hypothetical protein compare
BBR_RS15970 +0.4 1.1 hypothetical protein compare
BBR_RS13590 +0.4 2.1 hypothetical protein compare
BBR_RS20830 +0.4 0.6 hypothetical protein compare
BBR_RS13960 +0.3 1.1 thiamine biosynthesis protein ThiS compare
BBR_RS11665 +0.3 1.3 hypothetical protein compare
BBR_RS16330 +0.3 2.6 LacI family transcriptional regulator compare
BBR_RS13080 +0.3 2.3 LacI family DNA-binding transcriptional regulator compare
BBR_RS16135 +0.3 0.8 peptide deformylase compare
BBR_RS14300 +0.3 1.1 NUDIX hydrolase compare
BBR_RS18710 +0.3 2.3 hypothetical protein compare
BBR_RS13320 +0.3 2.1 ABC transporter ATP-binding protein compare
BBR_RS12490 +0.3 2.2 hypothetical protein compare
BBR_RS21005 +0.3 2.0 hypothetical protein compare
BBR_RS20615 +0.3 1.3 GNAT family N-acetyltransferase compare
BBR_RS14920 +0.3 2.1 ABC transporter permease compare
BBR_RS16835 +0.3 1.3 cell wall biosynthesis-associated protein compare
BBR_RS20805 +0.3 2.1 hypothetical protein compare
BBR_RS14845 +0.3 1.7 permease compare
BBR_RS10720 +0.3 2.9 PDZ domain-containing protein compare
BBR_RS17195 +0.3 2.0 hypothetical protein compare
BBR_RS15385 +0.3 1.1 hypothetical protein compare
BBR_RS16670 +0.3 1.4 hypothetical protein compare
BBR_RS10665 +0.3 3.1 DUF2156 domain-containing protein compare
BBR_RS14600 +0.3 2.0 ABC transporter ATP-binding protein compare
BBR_RS17755 +0.3 1.8 D-ribose pyranase compare
BBR_RS20175 +0.3 2.8 LacI family transcriptional regulator compare
BBR_RS14545 +0.3 1.9 TIGR00730 family Rossman fold protein compare
BBR_RS12270 +0.3 2.1 hypothetical protein compare
BBR_RS14850 +0.3 0.7 VOC family protein compare
BBR_RS14700 +0.3 1.1 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS13730 +0.3 2.2 hypothetical protein compare
BBR_RS21155 +0.3 1.2 hypothetical protein compare
BBR_RS14425 +0.3 1.7 histidine phosphatase family protein compare
BBR_RS20810 +0.3 0.5 pirin compare
BBR_RS17980 +0.3 2.1 GNAT family N-acetyltransferase compare
BBR_RS16970 +0.3 2.1 phosphoglycerate dehydrogenase compare
BBR_RS18575 +0.3 1.0 hypothetical protein compare
BBR_RS14575 +0.3 1.4 YraN family protein compare
BBR_RS14500 +0.3 2.0 hypothetical protein compare
BBR_RS14870 +0.3 0.8 histidine phosphatase family protein compare
BBR_RS12995 +0.3 1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS14900 +0.3 1.3 DNA-binding response regulator compare
BBR_RS21045 +0.3 1.8 hypothetical protein compare
BBR_RS21020 +0.3 1.7 transposase compare
BBR_RS12340 +0.3 1.3 Arc family DNA-binding protein compare
BBR_RS19265 +0.3 2.2 pyrrolidone-carboxylate peptidase compare
BBR_RS16195 +0.3 0.7 hypothetical protein compare
BBR_RS13195 +0.3 1.6 pyridoxal 5'-phosphate synthase lyase subunit PdxS compare
BBR_RS13065 +0.3 1.9 amino acid ABC transporter ATP-binding protein compare
BBR_RS14320 +0.3 1.8 Nif3-like dinuclear metal center hexameric protein compare
BBR_RS14130 +0.3 0.5 septum formation initiator family protein compare
BBR_RS16875 +0.3 2.0 NagC family transcriptional regulator compare
BBR_RS16780 +0.3 1.3 hypothetical protein compare
BBR_RS20840 +0.3 1.0 hypothetical protein compare
BBR_RS17840 +0.3 1.8 energy-coupling factor transporter transmembrane protein EcfT compare
BBR_RS15000 +0.3 1.6 ABC transporter ATP-binding protein compare
BBR_RS14690 +0.3 2.0 class I SAM-dependent methyltransferase compare
BBR_RS12815 +0.3 1.3 hypothetical protein compare
BBR_RS20085 +0.3 1.9 histidine phosphatase family protein compare
BBR_RS17025 +0.3 2.0 DUF2252 domain-containing protein compare
BBR_RS20430 +0.3 0.5 hypothetical protein compare
BBR_RS17130 +0.3 1.8 WYL domain-containing protein compare
BBR_RS16350 +0.3 1.8 carbohydrate ABC transporter permease compare
BBR_RS20915 +0.3 1.1 hypothetical protein compare
BBR_RS13125 +0.3 0.4 ABC transporter permease compare
BBR_RS15890 +0.3 1.3 DNA-binding response regulator compare
BBR_RS14080 +0.3 0.7 hypothetical protein compare
BBR_RS15820 +0.3 1.3 SOS response-associated peptidase compare
BBR_RS15295 +0.3 1.4 Cof-type HAD-IIB family hydrolase compare
BBR_RS14450 +0.3 1.7 methionine ABC transporter ATP-binding protein compare
BBR_RS13685 +0.3 1.4 DUF4143 domain-containing protein compare
BBR_RS16535 +0.2 0.8 DUF3046 domain-containing protein compare
BBR_RS18625 +0.2 2.1 alpha/beta hydrolase compare
BBR_RS17380 +0.2 1.9 hypothetical protein compare
BBR_RS14765 +0.2 0.7 hypothetical protein compare
BBR_RS12260 +0.2 1.7 LemA family protein compare
BBR_RS16285 +0.2 1.2 magnesium transporter CorA family protein compare
BBR_RS20030 +0.2 1.5 IS5/IS1182 family transposase compare
BBR_RS15140 +0.2 1.6 RNA methyltransferase compare
BBR_RS18715 +0.2 1.9 transcriptional regulator compare
BBR_RS18555 +0.2 1.7 NlpC/P60 family protein compare
BBR_RS15935 +0.2 1.3 hypothetical protein compare
BBR_RS17110 +0.2 1.5 oleate hydratase compare
BBR_RS16265 +0.2 1.9 hypothetical protein compare
BBR_RS17060 +0.2 1.3 acylphosphatase compare
BBR_RS15835 +0.2 1.2 MFS transporter compare
BBR_RS17185 +0.2 1.5 hypothetical protein compare
BBR_RS15490 +0.2 1.1 short-chain dehydrogenase compare
BBR_RS12210 +0.2 1.3 hypothetical protein compare
BBR_RS15100 +0.2 1.9 murein L,D-transpeptidase compare
BBR_RS17435 +0.2 1.5 universal stress protein compare
BBR_RS17045 +0.2 1.5 imidazoleglycerol-phosphate dehydratase compare
BBR_RS12620 +0.2 1.7 glycosyltransferase family 1 protein compare
BBR_RS17215 +0.2 1.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BBR_RS12710 +0.2 1.0 hypothetical protein compare
BBR_RS18610 +0.2 1.8 MFS transporter compare
BBR_RS11595 +0.2 0.7 50S ribosomal protein L9 compare
BBR_RS20070 +0.2 1.8 sugar ABC transporter permease compare
BBR_RS15220 +0.2 1.3 trimeric intracellular cation channel family protein compare
BBR_RS14590 +0.2 1.5 pyridoxine kinase compare
BBR_RS13545 +0.2 1.1 DUF4143 domain-containing protein compare
BBR_RS20160 +0.2 2.1 Solute-binding protein of ABC transporter system for sugars compare
BBR_RS12880 +0.2 1.5 Crp/Fnr family transcriptional regulator compare
BBR_RS13540 +0.2 1.3 alcohol dehydrogenase compare
BBR_RS11355 +0.2 1.2 hypothetical protein compare
BBR_RS11950 +0.2 0.9 tRNA-Tyr compare
BBR_RS12900 +0.2 0.7 DeoR/GlpR transcriptional regulator compare
BBR_RS16180 +0.2 1.6 IS21 family transposase compare
BBR_RS12715 +0.2 1.0 helix-turn-helix domain-containing protein compare
BBR_RS12550 +0.2 1.9 sugar transferase compare
BBR_RS14815 +0.2 1.4 D-hexose-6-phosphate mutarotase compare
BBR_RS13655 +0.2 1.3 hypothetical protein compare
BBR_RS13955 +0.2 1.6 argininosuccinate lyase compare
BBR_RS16380 +0.2 1.0 hypothetical protein compare
BBR_RS16735 +0.2 1.2 NUDIX hydrolase compare
BBR_RS20545 +0.2 1.2 hypothetical protein compare
BBR_RS15135 +0.2 1.5 glucose-1-phosphate adenylyltransferase compare
BBR_RS16145 +0.2 1.3 hypothetical protein compare
BBR_RS17905 +0.2 2.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS20230 +0.2 1.9 hypothetical protein compare
BBR_RS20930 +0.2 0.7 hypothetical protein compare
BBR_RS15955 +0.2 1.1 hypothetical protein compare
BBR_RS14885 +0.2 1.0 cyclomaltodextrinase compare
BBR_RS16855 +0.2 0.7 NUDIX domain-containing protein compare
BBR_RS14860 +0.2 1.4 MFS transporter compare
BBR_RS12155 +0.2 1.6 sugar ABC transporter permease compare
BBR_RS12395 +0.2 1.5 hypothetical protein compare
BBR_RS17000 +0.2 1.5 GTPase HflX compare
BBR_RS17875 +0.2 1.4 glucan 1,3-beta-glucosidase compare
BBR_RS19760 +0.2 0.2 polysaccharide ABC transporter ATPase compare
BBR_RS13265 +0.2 1.4 peptide methionine sulfoxide reductase msrA/msrB compare
BBR_RS19290 +0.2 1.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS14875 +0.2 1.3 uracil-xanthine permease compare
BBR_RS13450 +0.2 0.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS14755 +0.2 0.8 XRE family transcriptional regulator compare
BBR_RS14550 +0.2 1.2 hypothetical protein compare
BBR_RS18775 +0.2 1.7 LacI family transcriptional regulator compare
BBR_RS14605 +0.2 1.6 ABC transporter permease compare
BBR_RS15470 +0.2 1.3 LysR family transcriptional regulator compare
BBR_RS13665 +0.2 1.1 phospholipase/carboxylesterase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress PEG 1500 across organisms