Experiment set5IT057 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium antimonate 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5928 -4.6 -9.8 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3847 -4.5 -3.1 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5014 -4.1 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5155 -4.1 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1475 -3.9 -7.0 Arsenic resistance protein ArsH compare
Pf6N2E2_61 -3.8 -10.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5927 -3.8 -5.6 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_5573 -3.6 -4.9 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_2755 -3.6 -2.4 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4353 -3.6 -5.9 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2574 -3.5 -2.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_1476 -3.5 -4.7 (AF179595) Vco33 compare
Pf6N2E2_3908 -3.5 -4.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_70 -3.4 -4.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5430 -3.3 -9.0 Transglycosylase, Slt family compare
Pf6N2E2_3607 -3.3 -9.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5178 -3.2 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5527 -3.2 -3.1 Cold shock protein CspC compare
Pf6N2E2_2313 -3.1 -4.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4612 -2.9 -4.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_62 -2.9 -4.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3661 -2.8 -3.8 hypothetical protein compare
Pf6N2E2_2261 -2.8 -4.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_3351 -2.7 -5.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4369 -2.7 -1.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2507 -2.7 -6.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3516 -2.7 -2.8 Probable transmembrane protein compare
Pf6N2E2_2503 -2.7 -2.0 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5242 -2.6 -2.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4084 -2.6 -6.5 Transcriptional regulator compare
Pf6N2E2_2180 -2.6 -3.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3260 -2.5 -4.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2127 -2.5 -4.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4148 -2.5 -5.5 Glutamate-aspartate carrier protein compare
Pf6N2E2_3782 -2.3 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5523 -2.3 -5.1 Small-conductance mechanosensitive channel compare
Pf6N2E2_5316 -2.3 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5666 -2.3 -6.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3941 -2.3 -3.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2219 -2.3 -2.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4153 -2.2 -1.5 Sensory box histidine kinase compare
Pf6N2E2_5339 -2.2 -6.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2508 -2.2 -4.2 hypothetical protein compare
Pf6N2E2_4087 -2.2 -8.4 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf6N2E2_3303 -2.1 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_1082 -2.1 -3.2 CopG protein compare
Pf6N2E2_942 -2.1 -2.0 Mll6465 protein compare
Pf6N2E2_5006 -2.1 -6.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4451 -2.1 -6.1 FIG139438: lipoprotein B compare
Pf6N2E2_5069 -2.1 -5.3 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5342 -2.1 -3.3 21 kDa hemolysin precursor compare
Pf6N2E2_2320 -2.0 -3.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2880 -2.0 -3.5 FIG00959696: hypothetical protein compare
Pf6N2E2_5669 -2.0 -5.7 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_5068 -2.0 -9.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3258 -2.0 -3.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4437 -2.0 -6.5 Twin-arginine translocation protein TatB compare
Pf6N2E2_2984 -2.0 -2.5 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_4204 -2.0 -1.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2318 -2.0 -6.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4638 -2.0 -2.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4352 -2.0 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_563 -2.0 -6.8 Serine transporter compare
Pf6N2E2_5740 -1.9 -3.8 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_2317 -1.9 -4.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2045 -1.9 -1.9 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_2572 -1.9 -3.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4889 -1.9 -5.8 Putative transport protein compare
Pf6N2E2_5320 -1.9 -7.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3255 -1.9 -3.1 YrbA protein compare
Pf6N2E2_5103 -1.8 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3839 -1.8 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2552 -1.8 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2863 -1.8 -6.4 Gluconate permease compare
Pf6N2E2_2527 -1.8 -4.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3461 -1.7 -2.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4159 -1.7 -3.0 Cytochrome c4 compare
Pf6N2E2_2509 -1.7 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3659 -1.7 -4.0 Protein fixF compare
Pf6N2E2_4454 -1.7 -5.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3252 -1.7 -5.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5319 -1.7 -6.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3134 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_3617 -1.6 -4.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2886 -1.6 -10.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5771 -1.6 -5.5 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5665 -1.6 -5.1 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_2506 -1.6 -9.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5318 -1.6 -11.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4059 -1.6 -1.3 DNA-binding protein HU-alpha compare
Pf6N2E2_2181 -1.5 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5555 -1.5 -1.4 Cold shock protein CspA compare
Pf6N2E2_2420 -1.5 -2.1 hypothetical protein compare
Pf6N2E2_3257 -1.5 -2.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3253 -1.5 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2825 -1.5 -3.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5667 -1.5 -5.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1545 -1.5 -3.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1034 -1.4 -1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5317 -1.4 -8.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_6001 -1.4 -6.2 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_3611 -1.4 -1.3 HflC protein compare
Pf6N2E2_3696 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_945 -1.4 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_625 -1.4 -3.7 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2510 -1.4 -3.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5505 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_1533 -1.4 -2.0 membrane protein, putative compare
Pf6N2E2_2986 -1.4 -2.7 Transcriptional regulator, LuxR family compare
Pf6N2E2_3300 -1.4 -2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5001 -1.4 -1.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2277 -1.4 -1.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5727 -1.3 -3.5 FIG00955360: hypothetical protein compare
Pf6N2E2_2126 -1.3 -4.4 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_620 -1.3 -5.5 BatD compare
Pf6N2E2_2310 -1.3 -6.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4077 -1.3 -1.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4206 -1.3 -1.9 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_6063 -1.3 -5.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_5455 -1.2 -3.1 hypothetical protein compare
Pf6N2E2_5520 -1.2 -4.5 Sensory box histidine kinase compare
Pf6N2E2_4993 -1.2 -2.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5321 -1.2 -5.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_6022 -1.2 -2.4 StbE replicon stabilization toxin compare
Pf6N2E2_2586 -1.2 -1.9 Hpt domain protein compare
Pf6N2E2_3841 -1.2 -3.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_614 -1.2 -5.6 3-carboxymuconate cyclase compare
Pf6N2E2_2292 -1.2 -2.7 Universal stress protein family COG0589 compare
Pf6N2E2_4378 -1.2 -7.3 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
Pf6N2E2_2794 -1.2 -1.6 putative membrane protein compare
Pf6N2E2_5841 -1.2 -1.1 GlcG protein compare
Pf6N2E2_3658 -1.2 -4.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5370 -1.2 -6.9 LysR family transcriptional regulator QseA compare
Pf6N2E2_81 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_4591 -1.2 -3.8 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_2384 -1.2 -2.7 CmpX compare
Pf6N2E2_4331 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_623 -1.1 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_1474 -1.1 -3.9 SAM-dependent methyltransferases compare
Pf6N2E2_5241 -1.1 -1.7 Aminopeptidase N compare
Pf6N2E2_2788 -1.1 -2.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_2487 -1.1 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_3521 -1.1 -5.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_2311 -1.1 -4.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_895 -1.1 -3.0 Transcriptional regulator, HxlR family compare
Pf6N2E2_2428 -1.1 -2.2 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5579 -1.1 -4.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_1860 -1.1 -2.2 Ferredoxin, 2Fe-2S compare
Pf6N2E2_622 -1.1 -3.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5508 -1.1 -1.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5571 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_5331 -1.1 -4.4 ATPase, AFG1 family compare
Pf6N2E2_624 -1.1 -2.8 hypothetical protein PA3071 compare
Pf6N2E2_3672 -1.1 -4.2 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_5030 -1.1 -4.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_5605 -1.1 -2.0 FxsA protein compare
Pf6N2E2_5245 -1.1 -4.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3161 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_882 -1.1 -2.4 FIG00961517: hypothetical protein compare
Pf6N2E2_2387 -1.0 -3.0 Ribonuclease E inhibitor RraA compare
Pf6N2E2_5536 -1.0 -1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3004 -1.0 -2.0 Prophage baseplate assembly protein V compare
Pf6N2E2_1536 -1.0 -1.4 Permeases of the major facilitator superfamily compare
Pf6N2E2_3079 -1.0 -4.5 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_234 -1.0 -1.9 FIG00454312: hypothetical protein compare
Pf6N2E2_1477 -1.0 -3.0 hypothetical protein compare
Pf6N2E2_546 -1.0 -1.7 FIG00966904: hypothetical protein compare
Pf6N2E2_3786 -1.0 -2.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_5337 -1.0 -2.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5738 -1.0 -3.9 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_4418 -1.0 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3610 -1.0 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3635 -1.0 -1.6 FIG00953138: hypothetical protein compare
Pf6N2E2_3074 -1.0 -1.5 FIG00960973: hypothetical protein compare
Pf6N2E2_2852 -1.0 -5.7 GGDEF domain/EAL domain protein compare
Pf6N2E2_971 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_178 -1.0 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4372 -1.0 -3.0 FIG00460773: hypothetical protein compare
Pf6N2E2_5567 -1.0 -2.0 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_3834 -1.0 -3.8 Lipoprotein NlpD compare
Pf6N2E2_4537 -1.0 -2.0 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_288 -1.0 -1.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2940 -1.0 -3.0 OmpA family protein compare
Pf6N2E2_5442 -1.0 -5.8 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf6N2E2_5578 -1.0 -3.4 Ferric iron ABC transporter, ATP-binding protein compare
Pf6N2E2_5974 -0.9 -2.9 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_4181 -0.9 -0.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_1040 -0.9 -1.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5945 -0.9 -2.2 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_1705 -0.9 -1.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3807 -0.9 -1.9 Histidine utilization repressor compare
Pf6N2E2_2514 -0.9 -2.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_361 -0.9 -1.7 Peptide ABC transporter, permease protein compare
Pf6N2E2_855 -0.9 -1.7 Transcriptional regulator, IclR family compare
Pf6N2E2_3616 -0.9 -4.4 DNA mismatch repair protein MutL compare
Pf6N2E2_3606 -0.9 -3.6 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf6N2E2_1522 -0.9 -2.5 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_4706 -0.9 -1.7 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3183 -0.9 -1.9 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_1173 -0.9 -1.3 hypothetical protein compare


Specific Phenotypes

For 18 genes in this experiment

For stress Sodium antimonate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium antimonate across organisms