Experiment set5IT057 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium antimonate 0.005 M

Group: stress
Media: LB + Sodium antimonate (0.005 M), pH=7
Culturing: pseudo6_N2E2_ML5, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=500 rpm
By: Hans_Hualan on 2/2/2016
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 18 genes in this experiment

For stress Sodium antimonate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium antimonate across organisms

SEED Subsystems

Subsystem #Specific
ABC transporter dipeptide (TC 3.A.1.5.2) 1
Arsenic resistance 1
Bacterial Chemotaxis 1
Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more. 1
Cysteine Biosynthesis 1
DNA-binding regulatory proteins, strays 1
Folate Biosynthesis 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Glutathione: Non-redox reactions 1
Glycerol and Glycerol-3-phosphate Uptake and Utilization 1
Glycine and Serine Utilization 1
Pyruvate Alanine Serine Interconversions 1
Threonine anaerobic catabolism gene cluster 1
Tryptophan synthesis 1
Twin-arginine translocation system 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-glutamine degradation I 1 1 1
L-asparagine degradation I 1 1 1
4-aminobenzoate biosynthesis I 2 2 1
L-glutamate biosynthesis I 2 2 1
ammonia assimilation cycle III 3 3 1
L-asparagine degradation III (mammalian) 3 2 1
L-asparagine biosynthesis III (tRNA-dependent) 4 4 1
glutaminyl-tRNAgln biosynthesis via transamidation 4 4 1
superpathway of L-aspartate and L-asparagine biosynthesis 4 3 1
4-hydroxy-2-nonenal detoxification 4 1 1
pentachlorophenol degradation 10 5 2
N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation 5 2 1
L-glutamate and L-glutamine biosynthesis 7 6 1
L-citrulline biosynthesis 8 6 1
glutathione-mediated detoxification I 8 3 1
gliotoxin biosynthesis 9 2 1
glutathione-mediated detoxification II 9 1 1
chloramphenicol biosynthesis 9 1 1
superpathway of tetrahydrofolate biosynthesis 10 8 1
superpathway of candicidin biosynthesis 11 4 1
superpathway of tetrahydrofolate biosynthesis and salvage 12 10 1
superpathway of L-citrulline metabolism 12 8 1
indole glucosinolate activation (intact plant cell) 12 3 1
camalexin biosynthesis 12 2 1
superpathway of chorismate metabolism 59 43 1