Experiment set5IT057 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Aerobic_60MIN_ZN2B

200 most important genes:

  gene name fitness t score description  
CSW01_01300 -2.9 -4.4 sugar ABC transporter compare
CSW01_13305 -2.5 -2.8 shikimate kinase compare
CSW01_11535 -2.3 -5.6 thiamine-phosphate kinase compare
CSW01_13420 -2.2 -3.7 elongation factor P--(R)-beta-lysine ligase compare
CSW01_15430 -2.0 -3.0 hypothetical protein compare
CSW01_01295 -1.9 -1.8 ABC transporter permease compare
CSW01_03870 -1.9 -1.3 inositol monophosphatase compare
CSW01_02875 -1.8 -5.4 DNA recombination/repair protein RecA compare
CSW01_14680 -1.8 -1.8 aminotransferase compare
CSW01_05575 -1.8 -4.1 phosphate acetyltransferase compare
CSW01_06325 -1.7 -2.0 hypothetical protein compare
CSW01_18635 -1.7 -4.9 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_08450 -1.5 -2.3 antimicrobial peptide ABC transporter permease SapB compare
CSW01_04650 -1.4 -1.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_04820 -1.4 -6.9 serine hydroxymethyltransferase compare
CSW01_12320 -1.4 -1.6 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_11670 -1.4 -1.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_08710 -1.4 -2.4 hypothetical protein compare
CSW01_02490 -1.3 -6.2 glutathione synthetase compare
CSW01_00450 -1.3 -2.0 SCP2 domain-containing protein compare
CSW01_09920 -1.3 -1.2 chromosome partitioning protein ParA compare
CSW01_03985 -1.2 -3.2 GMP synthase (glutamine-hydrolyzing) compare
CSW01_01800 -1.1 -1.3 tRNA-Met compare
CSW01_13285 -1.1 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_03695 -1.1 -4.0 ribosomal large subunit pseudouridine synthase D compare
CSW01_09240 -1.1 -3.3 Holliday junction branch migration DNA helicase RuvB compare
CSW01_14055 -1.1 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_15870 -1.1 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_16325 -1.0 -1.3 hypothetical protein compare
CSW01_02755 -1.0 -1.4 glutamyl-tRNA amidotransferase compare
CSW01_17325 -1.0 -4.0 transaldolase compare
CSW01_16395 -0.9 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_14910 -0.9 -1.3 cold-shock protein compare
CSW01_10190 -0.9 -3.1 nucleoid-associated protein compare
CSW01_05020 -0.9 -2.3 regulatory protein ToxS compare
CSW01_09525 -0.9 -0.5 DNA translocase FtsK compare
CSW01_18685 -0.8 -0.7 heme utilization cystosolic carrier protein HutX compare
CSW01_18350 -0.8 -0.7 cell division protein DedD compare
CSW01_19435 -0.8 -1.2 hypothetical protein compare
CSW01_00560 -0.8 -2.5 DNA polymerase I compare
CSW01_05580 -0.8 -2.7 acetate kinase compare
CSW01_07435 -0.8 -1.1 hypothetical protein compare
CSW01_03075 -0.8 -2.2 phosphoheptose isomerase compare
CSW01_06420 -0.8 -2.7 DUF2982 domain-containing protein compare
CSW01_19600 -0.8 -2.9 hypothetical protein compare
CSW01_16310 -0.8 -1.1 DUF3709 domain-containing protein compare
CSW01_06300 -0.7 -1.0 DUF2750 domain-containing protein compare
CSW01_06410 -0.7 -1.7 hypothetical protein compare
CSW01_04390 -0.7 -1.8 outer membrane protein assembly factor BamE compare
CSW01_14100 -0.7 -2.6 hypothetical protein compare
CSW01_16590 -0.7 -0.9 N-acetyltransferase compare
CSW01_03950 -0.7 -1.8 hypothetical protein compare
CSW01_03915 -0.7 -1.3 Fe-S assembly protein IscX compare
CSW01_08240 -0.7 -1.3 ATP-binding protein compare
CSW01_07145 -0.7 -2.1 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_04550 -0.7 -1.9 pseudouridine synthase compare
CSW01_07215 -0.7 -1.8 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_18315 -0.7 -1.8 methyltransferase compare
CSW01_16900 -0.7 -0.8 twin-arginine translocase TatA/TatE family subunit compare
CSW01_02245 -0.7 -2.4 universal stress protein compare
CSW01_12130 -0.7 -2.5 DUF721 domain-containing protein compare
CSW01_16735 -0.7 -1.8 DUF4160 domain-containing protein compare
CSW01_10795 -0.7 -2.7 NAD(P)H:quinone oxidoreductase compare
CSW01_12365 -0.7 -1.5 inorganic phosphate transporter compare
CSW01_05990 -0.6 -1.7 agglutination protein compare
CSW01_00095 -0.6 -1.4 hypothetical protein compare
CSW01_07200 -0.6 -0.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_05370 -0.6 -1.1 YbaB/EbfC family nucleoid-associated protein compare
CSW01_01855 -0.6 -1.4 DUF2065 domain-containing protein compare
CSW01_17525 -0.6 -0.9 hypothetical protein compare
CSW01_16435 -0.6 -0.9 DUF3265 domain-containing protein compare
CSW01_13805 -0.6 -1.8 Hsp33 family molecular chaperone HslO compare
CSW01_02970 -0.6 -2.7 glutamate--cysteine ligase compare
CSW01_08165 -0.6 -2.4 carboxynorspermidine synthase compare
CSW01_04375 -0.6 -1.4 SsrA-binding protein compare
CSW01_15060 -0.6 -1.8 hypothetical protein compare
CSW01_18575 -0.6 -1.2 amidohydrolase compare
CSW01_14060 -0.6 -2.0 hypothetical protein compare
CSW01_05180 -0.6 -0.9 tRNA-Asn compare
CSW01_15685 -0.6 -2.0 toxin compare
CSW01_10710 -0.6 -3.6 deferrochelatase compare
CSW01_08625 -0.6 -1.7 chromosome partition protein MukE compare
CSW01_10045 -0.6 -2.8 sodium-dependent transporter compare
CSW01_11590 -0.6 -1.6 xanthine phosphoribosyltransferase compare
CSW01_05195 -0.6 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_03975 -0.6 -1.9 exodeoxyribonuclease VII large subunit compare
CSW01_04465 -0.6 -1.0 hypothetical protein compare
CSW01_14125 -0.6 -2.6 1,4-alpha-glucan branching enzyme compare
CSW01_03685 -0.6 -1.4 ribosomal subunit interface protein compare
CSW01_02790 -0.6 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
CSW01_19130 -0.6 -2.1 FAA hydrolase family protein compare
CSW01_05815 -0.6 -0.6 glutaredoxin compare
CSW01_09625 -0.5 -1.2 hypothetical protein compare
CSW01_07550 -0.5 -2.3 GntR family transcriptional regulator compare
CSW01_16285 -0.5 -1.0 acetyltransferase compare
CSW01_11785 -0.5 -0.7 exonuclease V subunit gamma compare
CSW01_09960 -0.5 -1.9 DUF1315 domain-containing protein compare
CSW01_15755 -0.5 -1.1 hypothetical protein compare
CSW01_00465 -0.5 -1.0 twin-arginine translocase subunit TatB compare
CSW01_07750 -0.5 -0.5 hypothetical protein compare
CSW01_04080 -0.5 -2.2 hypothetical protein compare
CSW01_09475 -0.5 -2.8 thiamine kinase compare
CSW01_17395 -0.5 -1.0 hypothetical protein compare
CSW01_03475 -0.5 -1.5 ATP-dependent RNA helicase SrmB compare
CSW01_19345 -0.5 -1.4 YccF domain-containing protein compare
CSW01_10565 -0.5 -1.5 hypothetical protein compare
CSW01_02450 -0.5 -2.6 pyrroline-5-carboxylate reductase compare
CSW01_00235 -0.5 -1.8 peptide deformylase compare
CSW01_04870 -0.5 -0.7 ribosome silencing factor compare
CSW01_14815 -0.5 -0.9 hypothetical protein compare
CSW01_09485 -0.5 -1.1 DUF1425 domain-containing protein compare
CSW01_01830 -0.5 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_11525 -0.5 -1.4 hypothetical protein compare
CSW01_06030 -0.5 -1.4 helicase compare
CSW01_11880 -0.5 -1.1 hypothetical protein compare
CSW01_16495 -0.5 -1.7 hypothetical protein compare
CSW01_09900 -0.5 -2.0 ribonuclease D compare
CSW01_07605 -0.5 -1.5 molecular chaperone compare
CSW01_19415 -0.5 -1.6 hypothetical protein compare
CSW01_08000 -0.5 -1.6 galactokinase compare
CSW01_17165 -0.5 -1.5 DUF296 domain-containing protein compare
CSW01_14180 -0.5 -1.6 hypothetical protein compare
CSW01_17295 -0.5 -2.5 molybdopterin molybdotransferase compare
CSW01_15865 -0.5 -0.9 DUF3465 domain-containing protein compare
CSW01_16030 -0.5 -1.0 DUF3709 domain-containing protein compare
CSW01_05280 -0.5 -2.1 uridine kinase compare
CSW01_05480 -0.4 -1.3 hypothetical protein compare
CSW01_07230 -0.4 -1.9 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_04515 -0.4 -1.5 50S ribosomal protein L36 compare
CSW01_00650 -0.4 -2.0 tyrosine recombinase XerC compare
CSW01_15560 -0.4 -0.8 lipocalin compare
CSW01_01015 -0.4 -3.3 DNA helicase II compare
CSW01_01965 -0.4 -0.6 glucose-6-phosphate isomerase compare
CSW01_05165 -0.4 -0.4 electron transport complex subunit RsxC compare
CSW01_09110 -0.4 -1.2 DNA-binding protein VF530 compare
CSW01_03930 -0.4 -2.4 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN compare
CSW01_18630 -0.4 -1.5 6-phosphogluconolactonase compare
CSW01_12500 -0.4 -1.9 hypothetical protein compare
CSW01_00385 -0.4 -1.8 transcriptional regulator AsnC compare
CSW01_06435 -0.4 -1.8 C4-dicarboxylate ABC transporter compare
CSW01_11125 -0.4 -1.8 hypothetical protein compare
CSW01_10835 -0.4 -1.7 hypothetical protein compare
CSW01_15150 -0.4 -0.9 hypothetical protein compare
CSW01_10130 -0.4 -2.0 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_18705 -0.4 -1.9 biopolymer transporter exbD1 compare
CSW01_11115 -0.4 -1.4 hypothetical protein compare
CSW01_17065 -0.4 -1.5 conjugal transfer protein TraF compare
CSW01_12760 -0.4 -1.4 phospholipid-binding protein MlaC compare
CSW01_12465 -0.4 -1.3 elongation factor 4 compare
CSW01_10555 -0.4 -2.3 hypothetical protein compare
CSW01_17215 -0.4 -1.2 multidrug transporter compare
CSW01_16015 -0.4 -1.8 hypothetical protein compare
CSW01_05260 -0.4 -1.6 hypothetical protein compare
CSW01_11415 -0.4 -1.4 phenolic acid decarboxylase compare
CSW01_07075 -0.4 -1.6 MFS transporter compare
CSW01_09035 -0.4 -1.4 IclR family transcriptional regulator compare
CSW01_02870 -0.4 -2.2 CinA family protein compare
CSW01_08220 -0.4 -1.1 16S rRNA pseudouridine(516) synthase compare
CSW01_04910 -0.4 -1.0 PhoH family protein compare
CSW01_18215 -0.4 -2.4 N-acetylglucosamine-binding protein GbpA compare
CSW01_19545 -0.4 -1.7 chemotaxis protein CheW compare
CSW01_17425 -0.4 -1.2 DUF2892 domain-containing protein compare
CSW01_12445 -0.4 -2.5 DNA repair protein RecO compare
CSW01_09175 -0.4 -1.5 YecA family protein compare
CSW01_08125 -0.4 -0.9 glutaredoxin family protein compare
CSW01_16925 -0.4 -1.9 cytochrome b compare
CSW01_16405 -0.4 -1.4 hemagglutinin compare
CSW01_08435 -0.4 -1.3 phage shock protein PspA compare
CSW01_09185 -0.4 -1.9 tol-pal system protein YbgF compare
CSW01_19540 -0.4 -1.5 chemotaxis protein CheW compare
CSW01_17490 -0.4 -1.6 aminoimidazole riboside kinase compare
CSW01_04195 -0.4 -1.8 class I SAM-dependent methyltransferase compare
CSW01_04595 -0.4 -2.4 DUF423 domain-containing protein compare
CSW01_14440 -0.4 -1.3 redox-sensitive transcriptional activator SoxR compare
CSW01_16430 -0.4 -1.6 hypothetical protein compare
CSW01_06560 -0.4 -0.9 6-carboxytetrahydropterin synthase QueD compare
CSW01_10170 -0.4 -0.9 MarC family protein compare
CSW01_12250 -0.4 -1.6 site-specific tyrosine recombinase XerD compare
CSW01_15205 -0.4 -1.9 HTH-type transcriptional regulator UlaR compare
CSW01_15680 -0.4 -0.6 DUF3265 domain-containing protein compare
CSW01_14335 -0.4 -1.3 ATP-dependent helicase compare
CSW01_14225 -0.4 -1.9 phosphatidylglycerophosphatase B compare
CSW01_11565 -0.4 -0.8 transcriptional regulator NrdR compare
CSW01_13340 -0.4 -2.5 DNA-binding transcriptional regulator OxyR compare
CSW01_18525 -0.4 -0.6 integrase compare
CSW01_12955 -0.4 -2.0 sulfate adenylyltransferase compare
CSW01_08775 -0.4 -1.7 hypothetical protein compare
CSW01_09560 -0.4 -1.3 orotidine-5'-phosphate decarboxylase compare
CSW01_18285 -0.4 -0.5 4a-hydroxytetrahydrobiopterin dehydratase compare
CSW01_04940 -0.4 -0.4 hypothetical protein compare
CSW01_09970 -0.4 -1.5 peptide-methionine (R)-S-oxide reductase compare
CSW01_17740 -0.4 -1.0 nicotinamidase/pyrazinamidase compare
CSW01_07130 -0.4 -0.5 hypothetical protein compare
CSW01_05890 -0.4 -1.7 hypothetical protein compare
CSW01_05490 -0.4 -1.4 L-threonylcarbamoyladenylate synthase compare
CSW01_14915 -0.4 -0.6 ribosome alternative rescue factor ArfA compare
CSW01_03855 -0.4 -1.3 preprotein translocase subunit YajC compare
CSW01_15405 -0.4 -0.9 integron integrase compare
CSW01_12255 -0.4 -0.8 flavodoxin FldB compare
CSW01_08660 -0.4 -1.4 PurR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_aerobic experiments

For lb_aerobic LB across organisms