Experiment set5IT057 for Pseudomonas fluorescens SBW25-INTG

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Sodium nitrite nitrogen source

Group: nitrogen source
Media: soilextract_PNNL_Prosser_PlotA_B_20191220 + D-Glucose (10 mM) + Sodium nitrite (10 mM)
Culturing: PseudoSBW25_INTG_ML3, 96 deep-well microplate; 1 mL volume, Aerobic, at 30 (C)
By: Joshua Elmore on 1/6/20

Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms

SEED Subsystems

Subsystem #Specific
Carboxysome 1
Cyanate hydrolysis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
CO2 fixation into oxaloacetate (anaplerotic) 2 2 1
cyanate degradation 3 2 1
C4 photosynthetic carbon assimilation cycle, NADP-ME type 7 4 1
C4 photosynthetic carbon assimilation cycle, NAD-ME type 11 6 1
3-hydroxypropanoate cycle 13 6 1
glyoxylate assimilation 13 4 1
C4 photosynthetic carbon assimilation cycle, PEPCK type 14 9 1
gluconeogenesis II (Methanobacterium thermoautotrophicum) 18 9 1
3-hydroxypropanoate/4-hydroxybutanate cycle 18 8 1
superpathway of the 3-hydroxypropanoate cycle 18 6 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 20 1