Experiment set5IT056 for Pantoea sp. MT58

Compare to:

Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_17560 -4.2 -1.7 ROK family transcriptional regulator compare
IAI47_10835 -3.9 -0.9 tRNA-Val compare
IAI47_11360 -3.8 -3.5 hypothetical protein compare
IAI47_16995 -3.6 -1.9 protein YrbN compare
IAI47_15995 -3.4 -1.5 leu operon leader peptide compare
IAI47_15595 -3.4 -1.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_16390 -3.2 -0.8 tRNA-Leu compare
IAI47_05195 -3.1 -2.6 DnaA inactivator Hda compare
IAI47_05070 -3.0 -0.7 outer membrane protein assembly factor BamB compare
IAI47_00735 -3.0 -1.7 protein-export chaperone SecB compare
IAI47_13065 -2.9 -1.8 DUF1418 family protein compare
IAI47_08440 -2.8 -2.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_09360 -2.7 -1.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_13690 -2.7 -0.6 cell envelope integrity protein TolA compare
IAI47_08445 -2.7 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_08085 -2.6 -5.9 helix-turn-helix domain-containing protein compare
IAI47_02350 -2.5 -1.0 tRNA-Thr compare
IAI47_13765 -2.5 -2.6 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_13840 -2.3 -2.7 replication initiation negative regulator SeqA compare
IAI47_13740 -2.3 -1.5 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_15605 -2.3 -1.6 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_18145 -2.3 -2.2 elongation factor Tu compare
IAI47_12375 -2.2 -1.5 acyl carrier protein compare
IAI47_19245 -2.1 -4.9 SIS domain-containing protein compare
IAI47_17205 -2.0 -1.4 PTS phosphocarrier protein NPr compare
IAI47_06405 -2.0 -2.3 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_05830 -2.0 -2.7 hypothetical protein compare
IAI47_15810 -1.9 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_13685 -1.9 -1.7 Tol-Pal system protein TolB compare
IAI47_00300 -1.9 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07475 -1.9 -1.0 hypothetical protein compare
IAI47_11480 -1.9 -2.1 hypothetical protein compare
IAI47_21450 -1.9 -1.0 general stress protein compare
IAI47_07930 -1.8 -1.5 DUF2158 domain-containing protein compare
IAI47_18715 -1.8 -1.9 YibL family ribosome-associated protein compare
IAI47_18400 -1.7 -2.5 tyrosine recombinase XerC compare
IAI47_09235 -1.7 -1.0 type I DNA topoisomerase compare
IAI47_10840 -1.7 -4.1 pyruvate kinase PykF compare
IAI47_20600 -1.7 -1.8 hypothetical protein compare
IAI47_06320 -1.7 -5.4 phosphate acetyltransferase compare
IAI47_15635 -1.7 -1.7 RNA polymerase-binding protein DksA compare
IAI47_00780 -1.7 -3.4 6-phosphofructokinase compare
IAI47_18240 -1.6 -2.8 NAD(P)H-flavin reductase compare
IAI47_13885 -1.6 -1.7 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_04300 -1.6 -5.4 recombinase RecA compare
IAI47_09240 -1.6 -1.5 HTH-type transcriptional regulator CysB compare
IAI47_10320 -1.6 -0.7 Rrf2 family transcriptional regulator compare
IAI47_12435 -1.6 -2.8 hypothetical protein compare
IAI47_15600 -1.5 -2.0 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_03375 -1.5 -6.7 peptide chain release factor 3 compare
IAI47_09210 -1.5 -6.2 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_07165 -1.5 -1.5 exodeoxyribonuclease I compare
IAI47_06395 -1.5 -1.0 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_11515 -1.5 -1.4 hypothetical protein compare
IAI47_04835 -1.5 -6.4 ATP-dependent RNA helicase SrmB compare
IAI47_06420 -1.5 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_06655 -1.4 -3.0 1-phosphofructokinase compare
IAI47_02400 -1.4 -1.1 YhdT family protein compare
IAI47_08850 -1.4 -3.5 septum site-determining protein MinD compare
IAI47_17185 -1.4 -5.1 RNA polymerase factor sigma-54 compare
IAI47_02035 -1.4 -2.7 YheV family putative metal-binding protein compare
IAI47_13925 -1.4 -1.4 tRNA-Met compare
IAI47_01365 -1.4 -0.9 inorganic phosphate transporter PitA compare
IAI47_06380 -1.4 -1.8 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_21880 -1.4 -0.5 ParA family protein compare
IAI47_00460 -1.4 -0.8 glutamate--ammonia ligase compare
IAI47_18550 -1.3 -2.3 peptidylprolyl isomerase compare
IAI47_12885 -1.3 -4.6 pyruvate formate lyase 1-activating protein compare
IAI47_12880 -1.3 -8.0 formate C-acetyltransferase compare
IAI47_20550 -1.3 -3.2 ABC transporter permease compare
IAI47_14955 -1.3 -0.9 phosphate starvation-inducible protein compare
IAI47_06390 -1.3 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_04740 -1.3 -2.8 hypothetical protein compare
IAI47_12175 -1.3 -2.3 anti-sigma-28 factor FlgM compare
IAI47_06325 -1.3 -3.9 acetate kinase compare
IAI47_12060 -1.3 -3.4 beta-ketoacyl-ACP synthase II compare
IAI47_08165 -1.2 -4.8 flagella biosynthesis regulatory protein FliZ compare
IAI47_19035 -1.2 -1.6 transcriptional regulator compare
IAI47_01825 -1.2 -6.9 two-component system sensor histidine kinase EnvZ compare
IAI47_10225 -1.2 -2.6 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_05035 -1.2 -1.9 nucleoside-diphosphate kinase compare
IAI47_03235 -1.2 -3.2 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_06415 -1.2 -2.9 NADH-quinone oxidoreductase subunit M compare
IAI47_00945 -1.2 -3.0 YijD family membrane protein compare
IAI47_13195 -1.2 -4.3 DNA starvation/stationary phase protection protein Dps compare
IAI47_04400 -1.2 -4.1 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_12570 -1.2 -0.7 tRNA-Ser compare
IAI47_04865 -1.2 -1.4 SoxR-reducing system protein RseC compare
IAI47_14775 -1.2 -3.2 transcriptional regulator NrdR compare
IAI47_06120 -1.2 -1.7 YfcZ/YiiS family protein compare
IAI47_05580 -1.2 -0.8 membrane protein YpdK compare
IAI47_10755 -1.1 -1.1 DUF1289 domain-containing protein compare
IAI47_06385 -1.1 -3.3 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_17020 -1.1 -2.6 30S ribosome-binding factor RbfA compare
IAI47_02515 -1.1 -2.8 transcriptional regulator ArgR compare
IAI47_09055 -1.1 -5.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_13745 -1.1 -2.6 2-oxoglutarate dehydrogenase E1 component compare
IAI47_08450 -1.1 -2.2 Holliday junction branch migration DNA helicase RuvB compare
IAI47_04870 -1.1 -3.1 elongation factor 4 compare
IAI47_20265 -1.1 -2.9 DUF1641 domain-containing protein compare
IAI47_19030 -1.1 -2.2 hypothetical protein compare
IAI47_08035 -1.1 -1.1 flagellar hook-basal body complex protein FliE compare
IAI47_10100 -1.1 -2.1 ABC transporter ATP-binding protein compare
IAI47_21830 -1.1 -1.2 hypothetical protein compare
IAI47_06245 -1.0 -1.8 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_15970 -1.0 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_10725 -1.0 -1.1 DUF1656 domain-containing protein compare
IAI47_11625 -1.0 -1.5 DUF1311 domain-containing protein compare
IAI47_21585 -1.0 -4.3 haloacid dehalogenase type II compare
IAI47_10565 -1.0 -1.2 DUF4113 domain-containing protein compare
IAI47_13545 -1.0 -4.5 6-phosphogluconolactonase compare
IAI47_03135 -1.0 -3.0 outer membrane channel protein TolC compare
IAI47_04690 -1.0 -3.6 hypothetical protein compare
IAI47_09580 -1.0 -1.4 FNR family transcription factor compare
IAI47_13935 -1.0 -0.7 tRNA-Gln compare
IAI47_06680 -1.0 -2.2 LysR family transcriptional regulator compare
IAI47_04750 -1.0 -1.1 hypothetical protein compare
IAI47_11850 -1.0 -2.2 hypothetical protein compare
IAI47_18405 -1.0 -2.7 DUF484 domain-containing protein compare
IAI47_06400 -1.0 -1.3 NADH-quinone oxidoreductase subunit J compare
IAI47_13760 -1.0 -2.2 succinate dehydrogenase membrane anchor subunit compare
IAI47_05150 -1.0 -4.3 exopolyphosphatase compare
IAI47_00430 -0.9 -5.9 DNA polymerase I compare
IAI47_14750 -0.9 -2.8 phosphatidylglycerophosphatase A compare
IAI47_15880 -0.9 -1.7 DNA gyrase inhibitor YacG compare
IAI47_03665 -0.9 -3.6 agmatinase compare
IAI47_07710 -0.9 -3.3 BCCT family transporter compare
IAI47_19550 -0.9 -1.1 DUF1471 domain-containing protein compare
IAI47_16490 -0.9 -2.2 PTS sugar transporter subunit IIA compare
IAI47_15285 -0.9 -2.4 oxalurate catabolism protein HpxX compare
IAI47_00875 -0.9 -0.9 met regulon transcriptional regulator MetJ compare
IAI47_01625 -0.9 -1.6 GNAT family N-acetyltransferase compare
IAI47_06565 -0.9 -1.1 YejL family protein compare
IAI47_08105 -0.9 -1.5 DinI family protein compare
IAI47_01765 -0.9 -4.8 DeoR/GlpR family transcriptional regulator compare
IAI47_06365 -0.9 -2.4 NADH-quinone oxidoreductase subunit B compare
IAI47_17005 -0.9 -3.9 polyribonucleotide nucleotidyltransferase compare
IAI47_16825 -0.9 -3.7 ribonuclease E inhibitor RraB compare
IAI47_07945 -0.9 -3.3 DUF2525 domain-containing protein compare
IAI47_00940 -0.9 -4.3 HTH-type transcriptional repressor FabR compare
IAI47_11310 -0.9 -2.0 redox-regulated ATPase YchF compare
IAI47_11425 -0.9 -2.9 hypothetical protein compare
IAI47_12645 -0.9 -1.2 porin OmpA compare
IAI47_01740 -0.9 -1.3 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_03805 -0.9 -3.0 FAD assembly factor SdhE compare
IAI47_06475 -0.9 -2.6 transcriptional regulator RcsB compare
IAI47_13180 -0.9 -2.9 manganese-binding transcriptional regulator MntR compare
IAI47_19850 -0.9 -1.8 hypothetical protein compare
IAI47_03820 -0.9 -2.2 site-specific tyrosine recombinase XerD compare
IAI47_12740 -0.9 -2.0 aliphatic sulfonates ABC transporter ATP-binding protein compare
IAI47_05125 -0.9 -1.9 hypothetical protein compare
IAI47_14680 -0.9 -2.6 cytochrome o ubiquinol oxidase subunit II compare
IAI47_18540 -0.8 -3.3 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_00730 -0.8 -1.9 glutaredoxin 3 compare
IAI47_06550 -0.8 -1.8 hypothetical protein compare
IAI47_00845 -0.8 -3.5 HslU--HslV peptidase ATPase subunit compare
IAI47_00515 -0.8 -0.8 DNA-directed RNA polymerase subunit omega compare
IAI47_04335 -0.8 -1.2 tRNA-Arg compare
IAI47_21530 -0.8 -2.2 FeoA domain-containing protein compare
IAI47_02750 -0.8 -5.6 class 1 fructose-bisphosphatase compare
IAI47_20000 -0.8 -1.9 PTS sugar transporter subunit IIB compare
IAI47_08805 -0.8 -2.9 RidA family protein compare
IAI47_02455 -0.8 -3.8 ribonuclease G compare
IAI47_21240 -0.8 -2.9 hypothetical protein compare
IAI47_13710 -0.8 -1.8 cyd operon protein YbgE compare
IAI47_09280 -0.8 -1.8 stress response translation initiation inhibitor YciH compare
IAI47_18265 -0.8 -1.1 Sec-independent protein translocase subunit TatB compare
IAI47_07020 -0.8 -0.6 hypothetical protein compare
IAI47_21115 -0.8 -1.3 arsenate reductase (glutaredoxin) compare
IAI47_14805 -0.8 -2.8 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_10740 -0.8 -3.3 hypothetical protein compare
IAI47_13140 -0.8 -4.0 molybdopterin molybdotransferase MoeA compare
IAI47_01820 -0.8 -3.4 two-component system response regulator OmpR compare
IAI47_19660 -0.8 -2.7 hypothetical protein compare
IAI47_01545 -0.8 -2.2 cell division ATP-binding protein FtsE compare
IAI47_08675 -0.8 -2.7 metallophosphoesterase compare
IAI47_09675 -0.8 -1.6 YoaK family small membrane protein compare
IAI47_20975 -0.8 -3.2 cupin compare
IAI47_11995 -0.7 -2.4 beta-N-acetylhexosaminidase compare
IAI47_05080 -0.7 -2.1 zinc ribbon domain-containing protein compare
IAI47_08335 -0.7 -2.4 chemotaxis response regulator CheY compare
IAI47_18410 -0.7 -2.2 diaminopimelate epimerase compare
IAI47_00840 -0.7 -2.3 ribonuclease E activity regulator RraA compare
IAI47_06370 -0.7 -2.7 NADH-quinone oxidoreductase subunit C/D compare
IAI47_11760 -0.7 -0.7 TonB-dependent siderophore receptor compare
IAI47_13850 -0.7 -1.9 LexA regulated protein compare
IAI47_18675 -0.7 -2.5 MarR family transcriptional regulator compare
IAI47_07965 -0.7 -2.0 transcriptional regulator RcsA compare
IAI47_17860 -0.7 -2.4 envelope stress response protein PspG compare
IAI47_15145 -0.7 -3.5 beta-Ala-His dipeptidase compare
IAI47_11155 -0.7 -3.0 DeoR/GlpR transcriptional regulator compare
IAI47_13755 -0.7 -3.7 succinate dehydrogenase flavoprotein subunit compare
IAI47_00120 -0.7 -2.7 sugar kinase compare
IAI47_11540 -0.7 -1.4 type VI secretion system tip protein VgrG compare
IAI47_04425 -0.7 -3.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_18415 -0.7 -1.9 lipoprotein compare
IAI47_19475 -0.7 -2.8 4-aminobutyrate--2-oxoglutarate transaminase compare
IAI47_10550 -0.7 -1.7 two-component-system connector protein YcgZ compare
IAI47_01245 -0.7 -3.4 potassium-transporting ATPase subunit KdpC compare
IAI47_18775 -0.7 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms