Experiment set5IT055 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Hydroxylamine hydrochloride 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3285 -6.2 -4.1 Rod shape-determining protein MreD compare
Pf6N2E2_5006 -4.8 -8.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4353 -4.7 -5.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5252 -4.7 -2.2 FIG00956396: hypothetical protein compare
Pf6N2E2_2473 -4.7 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_1694 -4.5 -1.2 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5069 -4.5 -6.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5084 -4.5 -11.5 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_4996 -4.4 -3.2 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_5068 -4.3 -13.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5014 -4.3 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4077 -4.3 -2.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_178 -4.3 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3617 -4.3 -5.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5522 -4.2 -3.5 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_464 -4.1 -2.2 Sensory histidine kinase QseC compare
Pf6N2E2_1431 -4.1 -3.1 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_3461 -4.1 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5544 -4.0 -8.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2586 -4.0 -2.1 Hpt domain protein compare
Pf6N2E2_4187 -3.9 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5160 -3.8 -1.5 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2217 -3.8 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_451 -3.7 -2.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4276 -3.7 -4.4 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2320 -3.7 -2.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5406 -3.6 -2.3 FIG00958224: hypothetical protein compare
Pf6N2E2_827 -3.6 -2.7 probable dioxygenase compare
Pf6N2E2_5723 -3.6 -11.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_447 -3.6 -4.8 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2218 -3.5 -2.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5150 -3.4 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3941 -3.4 -3.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4084 -3.4 -7.5 Transcriptional regulator compare
Pf6N2E2_1315 -3.4 -1.3 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_3778 -3.3 -2.5 FIG00954300: hypothetical protein compare
Pf6N2E2_4601 -3.3 -2.2 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4585 -3.3 -11.9 Cell division protein FtsX compare
Pf6N2E2_3847 -3.3 -3.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3665 -3.2 -0.9 serine/threonine protein kinase compare
Pf6N2E2_3833 -3.2 -4.4 hypothetical protein compare
Pf6N2E2_1424 -3.2 -1.2 transcriptional regulator, TetR family compare
Pf6N2E2_2447 -3.2 -6.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2200 -3.1 -1.2 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_4584 -3.1 -2.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4352 -3.0 -2.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3908 -3.0 -5.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4607 -3.0 -3.6 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_4999 -2.9 -5.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3770 -2.9 -2.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4611 -2.9 -3.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_75 -2.9 -2.4 Colicin V production protein compare
Pf6N2E2_3301 -2.9 -11.8 ABC transporter, ATP-binding protein compare
Pf6N2E2_4414 -2.9 -3.6 FIG00953808: hypothetical protein compare
Pf6N2E2_2264 -2.9 -4.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5494 -2.9 -4.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_1656 -2.9 -2.0 hypothetical protein compare
Pf6N2E2_2999 -2.8 -2.5 probable tail fiber assembly protein compare
Pf6N2E2_5331 -2.8 -6.5 ATPase, AFG1 family compare
Pf6N2E2_4071 -2.8 -3.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_6045 -2.8 -1.1 hypothetical protein compare
Pf6N2E2_5339 -2.8 -7.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5720 -2.8 -9.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_70 -2.8 -4.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3271 -2.8 -1.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2384 -2.8 -4.8 CmpX compare
Pf6N2E2_3303 -2.7 -4.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4057 -2.7 -0.7 lipoprotein, putative compare
Pf6N2E2_1812 -2.7 -3.5 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_4541 -2.7 -1.0 hypothetical protein compare
Pf6N2E2_2752 -2.7 -8.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5178 -2.7 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5647 -2.7 -4.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2126 -2.6 -6.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5337 -2.6 -5.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5841 -2.6 -1.0 GlcG protein compare
Pf6N2E2_3876 -2.6 -4.9 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3612 -2.6 -2.4 HflK protein compare
Pf6N2E2_2318 -2.6 -6.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4146 -2.6 -1.8 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_4369 -2.6 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5172 -2.5 -3.2 FOG: TPR repeat compare
Pf6N2E2_5671 -2.5 -3.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2325 -2.5 -5.8 Recombination protein RecR compare
Pf6N2E2_2549 -2.5 -1.3 hypothetical protein compare
Pf6N2E2_1932 -2.5 -4.2 Transcriptional regulator, IclR family compare
Pf6N2E2_3786 -2.5 -3.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_2822 -2.5 -6.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2274 -2.5 -5.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4762 -2.5 -2.0 Biotin synthesis protein BioH compare
Pf6N2E2_2938 -2.5 -3.6 Outer membrane lipoprotein compare
Pf6N2E2_5188 -2.5 -4.3 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3658 -2.5 -6.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_374 -2.5 -3.6 FIG00953249: hypothetical protein compare
Pf6N2E2_3603 -2.5 -5.1 FIG003573: hypothetical protein compare
Pf6N2E2_5245 -2.5 -6.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3607 -2.5 -8.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2507 -2.5 -5.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4640 -2.5 -1.3 hypothetical protein compare
Pf6N2E2_2261 -2.4 -5.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_2022 -2.4 -4.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_280 -2.4 -1.9 hypothetical protein compare
Pf6N2E2_2127 -2.4 -4.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3521 -2.4 -10.3 Sensor histidine kinase/response regulator compare
Pf6N2E2_5001 -2.4 -1.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5816 -2.4 -1.5 Smr domain protein compare
Pf6N2E2_3264 -2.4 -2.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_50 -2.4 -6.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3834 -2.3 -5.7 Lipoprotein NlpD compare
Pf6N2E2_4372 -2.3 -5.3 FIG00460773: hypothetical protein compare
Pf6N2E2_4453 -2.3 -11.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5986 -2.3 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5775 -2.3 -2.9 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_2967 -2.3 -1.8 Cold shock protein CspA compare
Pf6N2E2_1435 -2.3 -1.6 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_161 -2.2 -2.9 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_819 -2.2 -2.2 Response regulator compare
Pf6N2E2_5766 -2.2 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_5261 -2.2 -1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_155 -2.2 -2.7 Probable transmembrane protein compare
Pf6N2E2_4205 -2.2 -2.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2825 -2.2 -3.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_923 -2.2 -2.5 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2459 -2.2 -1.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_4153 -2.2 -1.0 Sensory box histidine kinase compare
Pf6N2E2_1652 -2.2 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2352 -2.2 -2.3 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_5007 -2.2 -5.3 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3300 -2.1 -2.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_671 -2.1 -2.4 2-methylaconitate racemase compare
Pf6N2E2_4424 -2.1 -2.8 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_5328 -2.1 -2.1 FIG00958649: hypothetical protein compare
Pf6N2E2_649 -2.1 -1.7 General secretion pathway protein L compare
Pf6N2E2_1317 -2.1 -3.9 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_2753 -2.1 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_4072 -2.1 -5.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2219 -2.1 -2.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2156 -2.1 -1.7 Putative polyketide synthase (Fragment) compare
Pf6N2E2_5727 -2.1 -4.2 FIG00955360: hypothetical protein compare
Pf6N2E2_3664 -2.1 -6.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_6099 -2.1 -0.9 tRNA-Glu-TTC compare
Pf6N2E2_1082 -2.1 -2.3 CopG protein compare
Pf6N2E2_2469 -2.1 -4.0 hypothetical protein compare
Pf6N2E2_5523 -2.1 -2.7 Small-conductance mechanosensitive channel compare
Pf6N2E2_4889 -2.1 -4.6 Putative transport protein compare
Pf6N2E2_3942 -2.1 -4.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3258 -2.1 -3.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_288 -2.1 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3661 -2.0 -4.5 hypothetical protein compare
Pf6N2E2_4204 -2.0 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2845 -2.0 -5.9 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_1754 -2.0 -2.3 FIG00731982: hypothetical protein compare
Pf6N2E2_2904 -2.0 -2.0 Hypothetical protein DUF454 compare
Pf6N2E2_5956 -2.0 -4.6 FIG004453: protein YceG like compare
Pf6N2E2_828 -2.0 -4.1 Transcriptional regulator, TetR family compare
Pf6N2E2_963 -2.0 -3.4 probable exported protein STY4558 compare
Pf6N2E2_4263 -2.0 -2.9 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_2281 -2.0 -1.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_716 -2.0 -4.0 Nitric oxide-dependent regulator DnrN or NorA compare
Pf6N2E2_3100 -2.0 -2.3 FIG00953063: hypothetical protein compare
Pf6N2E2_2674 -1.9 -1.0 FIG00953856: hypothetical protein compare
Pf6N2E2_1492 -1.9 -2.0 No significant database matches compare
Pf6N2E2_2791 -1.9 -1.6 FIG00954883: hypothetical protein compare
Pf6N2E2_1128 -1.9 -1.7 Two-component response regulator compare
Pf6N2E2_3055 -1.9 -2.1 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_2871 -1.9 -1.7 FIG00954271: hypothetical protein compare
Pf6N2E2_3198 -1.9 -1.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3270 -1.9 -4.3 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_2003 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_2502 -1.9 -3.5 O-antigen acetylase compare
Pf6N2E2_350 -1.9 -1.5 Gfa-like protein compare
Pf6N2E2_1499 -1.9 -1.9 ABC transporter amino acid-binding protein compare
Pf6N2E2_1968 -1.9 -2.4 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_122 -1.9 -1.4 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_746 -1.9 -1.1 FIG00958097: hypothetical protein compare
Pf6N2E2_51 -1.9 -6.4 hypothetical protein compare
Pf6N2E2_3260 -1.9 -4.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3713 -1.9 -2.3 Acyl carrier protein compare
Pf6N2E2_1141 -1.9 -2.3 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_2440 -1.8 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1033 -1.8 -2.2 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_433 -1.8 -2.6 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_5307 -1.8 -3.7 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_2474 -1.8 -5.8 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5338 -1.8 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_544 -1.8 -1.7 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2477 -1.7 -1.4 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_1611 -1.7 -2.2 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_1912 -1.7 -3.2 hypothetical protein compare
Pf6N2E2_5545 -1.7 -3.0 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2574 -1.7 -1.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_5567 -1.7 -2.0 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_146 -1.7 -1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_833 -1.7 -1.9 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_5237 -1.7 -1.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_945 -1.7 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4416 -1.7 -2.1 Tyrosine recombinase XerC compare
Pf6N2E2_5508 -1.7 -1.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4624 -1.7 -0.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_1981 -1.7 -3.0 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare


Specific Phenotypes

For 24 genes in this experiment

For stress Hydroxylamine hydrochloride in Pseudomonas fluorescens FW300-N2E2

For stress Hydroxylamine hydrochloride across organisms