Experiment set5IT055 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Cholin acetate 40 mM

200 most important genes:

  gene name fitness t score description  
AO356_24665 -5.4 -6.5 AAA family ATPase compare
AO356_24640 -5.3 -5.2 protein BatD compare
AO356_24655 -5.2 -5.0 hypothetical protein compare
AO356_24645 -4.8 -6.5 hypothetical protein compare
AO356_17515 -4.7 -11.3 murein transglycosylase compare
AO356_02250 -3.9 -8.7 pyridine nucleotide-disulfide oxidoreductase compare
AO356_08235 -3.7 -11.2 histidine kinase compare
AO356_04560 -3.6 -2.5 serine peptidase compare
AO356_11025 -3.6 -7.6 transcriptional regulator PhoU compare
AO356_17245 -3.6 -10.4 hypothetical protein compare
AO356_08635 -3.5 -9.9 ATP phosphoribosyltransferase regulatory subunit compare
AO356_19420 -3.5 -2.4 septum formation inhibitor compare
AO356_05670 -3.5 -3.4 recombinase RecA compare
AO356_14505 -3.4 -2.3 peptidase M23 compare
AO356_17240 -3.4 -7.7 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO356_17230, AO356_17245, and AO356_17235) (from data) compare
AO356_05995 -3.4 -3.4 hypothetical protein compare
AO356_17065 -3.3 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_09810 -3.3 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_17230 -3.2 -13.5 RND transporter compare
AO356_01745 -3.2 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_16600 -3.1 -3.6 malate:quinone oxidoreductase compare
AO356_07005 -3.0 -2.9 ABC transporter ATP-binding protein compare
AO356_09525 -3.0 -8.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_24650 -3.0 -5.0 BatB protein compare
AO356_13685 -3.0 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_15325 -3.0 -3.4 hypothetical protein compare
AO356_06575 -3.0 -2.0 outer membrane protein assembly factor BamB compare
AO356_08645 -2.9 -3.5 hypothetical protein compare
AO356_17235 -2.9 -13.7 fusaric acid resistance protein compare
AO356_09795 -2.9 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
AO356_06965 -2.9 -9.9 histidinol dehydrogenase compare
AO356_18755 -2.9 -10.1 succinylglutamate desuccinylase compare
AO356_09800 -2.8 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_10875 -2.8 -19.8 acetyl-CoA hydrolase compare
AO356_12515 -2.8 -5.9 exodeoxyribonuclease III compare
AO356_05640 -2.8 -4.5 LuxR family transcriptional regulator compare
AO356_01750 -2.8 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO356_01740 -2.8 -3.7 DNA-binding protein compare
AO356_07210 -2.7 -4.3 histidine kinase compare
AO356_07910 -2.6 -1.8 exodeoxyribonuclease V subunit alpha compare
AO356_09815 -2.6 -7.6 imidazoleglycerol-phosphate dehydratase compare
AO356_18020 -2.6 -4.8 ATP-dependent DNA helicase RuvA compare
AO356_02265 -2.6 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_11055 -2.5 -5.5 long-chain acyl-CoA thioester hydrolase compare
AO356_08640 -2.5 -4.1 membrane protease HflC compare
AO356_07915 -2.5 -3.4 exodeoxyribonuclease V subunit beta compare
AO356_11420 -2.5 -9.7 histidine kinase compare
AO356_20830 -2.5 -4.3 phosphoadenosine phosphosulfate reductase compare
AO356_17520 -2.4 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_18880 -2.4 -8.4 MFS transporter conserved
AO356_11585 -2.4 -5.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_06990 -2.3 -5.8 toluene tolerance protein compare
AO356_06970 -2.3 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_03350 -2.3 -4.9 glycosyl transferase compare
AO356_03405 -2.3 -3.7 serine acetyltransferase compare
AO356_19225 -2.2 -12.4 histidine kinase compare
AO356_07000 -2.2 -3.6 ABC transporter permease compare
AO356_22125 -2.2 -7.7 isocitrate dehydrogenase compare
AO356_12780 -2.2 -8.0 argininosuccinate lyase compare
AO356_08880 -2.2 -5.7 glycosyl transferase compare
AO356_27180 -2.2 -4.5 hypothetical protein compare
AO356_06385 -2.2 -4.1 recombinase XerD compare
AO356_09560 -2.1 -12.8 glucosyltransferase MdoH compare
AO356_18025 -2.1 -3.1 ATP-dependent DNA helicase RuvB compare
AO356_21125 -2.1 -4.2 cyclic peptide transporter compare
AO356_09520 -2.1 -5.8 phosphoribosyl-AMP cyclohydrolase compare
AO356_25750 -2.1 -2.7 GntR family transcriptional regulator compare
AO356_02800 -2.1 -3.4 transporter compare
AO356_20800 -2.1 -2.0 hypothetical protein compare
AO356_04570 -2.1 -6.8 RNA polymerase subunit sigma compare
AO356_03400 -2.1 -5.5 aminotransferase DegT compare
AO356_17075 -2.1 -3.3 cytochrome C compare
AO356_13345 -2.1 -2.5 cell division ATP-binding protein FtsE compare
AO356_03415 -2.1 -7.3 oxidoreductase compare
AO356_19550 -2.0 -8.5 acireductone dioxygenase compare
AO356_18060 -2.0 -8.4 hypothetical protein compare
AO356_15165 -2.0 -2.6 protein cII compare
AO356_08870 -2.0 -7.8 polymerase compare
AO356_10170 -2.0 -3.5 chemotaxis protein CheY compare
AO356_09540 -2.0 -2.6 twin-arginine protein translocation system subunit TatC compare
AO356_22980 -2.0 -3.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO356_14940 -1.9 -9.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
AO356_17070 -1.9 -2.8 cytochrome B compare
AO356_17225 -1.9 -7.2 LysR family transcriptional regulator conserved
AO356_10185 -1.9 -8.7 glutamate--cysteine ligase compare
AO356_10340 -1.9 -11.5 phosphoserine phosphatase compare
AO356_16050 -1.9 -2.8 glucose-6-phosphate isomerase compare
AO356_08670 -1.9 -3.0 N-acetylmuramoyl-L-alanine amidase compare
AO356_24845 -1.8 -3.5 ATPase compare
AO356_03345 -1.8 -7.1 hypothetical protein compare
AO356_15420 -1.8 -5.8 hypothetical protein compare
AO356_20175 -1.8 -1.2 3-oxoacyl-ACP synthase compare
AO356_13350 -1.8 -13.6 cell division protein FtsX compare
AO356_09565 -1.8 -6.7 glucan biosynthesis protein G compare
AO356_17090 -1.8 -4.3 phospholipid-binding protein compare
AO356_11045 -1.8 -10.1 phosphate-binding protein compare
AO356_10345 -1.8 -6.0 RNA pyrophosphohydrolase compare
AO356_18965 -1.7 -3.3 transcriptional regulator compare
AO356_08955 -1.7 -7.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_02190 -1.7 -6.2 hypothetical protein compare
AO356_16185 -1.7 -4.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_06960 -1.7 -7.3 histidinol-phosphate aminotransferase compare
AO356_02465 -1.7 -2.7 carbonate dehydratase compare
AO356_12885 -1.7 -7.8 hypothetical protein compare
AO356_02325 -1.7 -1.9 3-ketoacyl-CoA thiolase compare
AO356_05895 -1.7 -5.7 protein-L-isoaspartate O-methyltransferase compare
AO356_16155 -1.6 -5.9 hypothetical protein compare
AO356_17985 -1.6 -5.9 cold-shock protein compare
AO356_13145 -1.6 -7.7 glutamine synthetase compare
AO356_03360 -1.6 -2.9 hypothetical protein compare
AO356_20850 -1.6 -4.3 hypothetical protein compare
AO356_18970 -1.6 -7.6 histidine kinase compare
AO356_02290 -1.6 -2.9 TetR family transcriptional regulator compare
AO356_17020 -1.6 -5.2 cytochrome D ubiquinol oxidase subunit III compare
AO356_06995 -1.6 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_06005 -1.6 -2.9 zinc metallopeptidase RseP compare
AO356_16060 -1.6 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_18010 -1.6 -6.4 hypothetical protein compare
AO356_08660 -1.6 -7.7 tRNA dimethylallyltransferase compare
AO356_12895 -1.6 -13.5 polyphosphate kinase compare
AO356_02875 -1.5 -5.2 peroxiredoxin compare
AO356_07385 -1.5 -1.4 tRNA-Thr compare
AO356_28595 -1.5 -2.9 transcriptional regulator compare
AO356_16450 -1.5 -3.3 GTP-binding protein compare
AO356_19080 -1.5 -7.2 dehydrogenase compare
AO356_04565 -1.5 -7.5 RNA polymerase subunit sigma compare
AO356_03500 -1.5 -3.8 3-oxoacyl-ACP reductase compare
AO356_09775 -1.5 -7.6 peptidase M23 compare
AO356_17950 -1.5 -7.5 histidine kinase compare
AO356_18960 -1.5 -6.1 hypothetical protein compare
AO356_11030 -1.5 -9.6 phosphate ABC transporter ATP-binding protein compare
AO356_16610 -1.5 -6.4 hypothetical protein compare
AO356_25260 -1.5 -1.4 iron transporter compare
AO356_02485 -1.5 -2.8 transcriptional regulator compare
AO356_19840 -1.5 -5.0 histidine kinase compare
AO356_11315 -1.5 -2.1 shikimate dehydrogenase compare
AO356_20920 -1.4 -4.6 peptidase compare
AO356_13655 -1.4 -3.7 hypothetical protein compare
AO356_19730 -1.4 -1.4 hypothetical protein compare
AO356_13770 -1.4 -5.8 ATP-dependent RNA helicase compare
AO356_02125 -1.4 -3.6 hypothetical protein compare
AO356_04885 -1.4 -4.8 multidrug transporter compare
AO356_03430 -1.4 -3.6 hypothetical protein compare
AO356_02580 -1.4 -4.3 GntR family transcriptional regulator compare
AO356_20475 -1.4 -1.5 hypothetical protein compare
AO356_15295 -1.4 -2.4 nicotinate-nucleotide adenylyltransferase compare
AO356_09080 -1.4 -2.9 thioredoxin compare
AO356_25120 -1.3 -1.9 hypothetical protein compare
AO356_22005 -1.3 -3.2 CopG family transcriptional regulator compare
AO356_29070 -1.3 -3.9 succinate-semialdehyde dehydrogenase compare
AO356_07050 -1.3 -6.7 glmZ(sRNA)-inactivating NTPase compare
AO356_03380 -1.3 -3.3 glycosyl amidation-associated protein WbuZ compare
AO356_12380 -1.3 -5.4 ATP-dependent DNA helicase RecG compare
AO356_11610 -1.3 -1.9 glycerol acyltransferase compare
AO356_03355 -1.3 -2.6 hypothetical protein compare
AO356_20845 -1.3 -5.4 alpha-L-glutamate ligase compare
AO356_04325 -1.3 -5.1 allophanate hydrolase compare
AO356_12520 -1.3 -2.1 orotate phosphoribosyltransferase compare
AO356_10555 -1.3 -8.8 hemolysin secretion protein D compare
AO356_04875 -1.3 -6.8 antibiotic transporter compare
AO356_26655 -1.3 -2.0 (2Fe-2S)-binding protein compare
AO356_13475 -1.3 -5.4 glutathione synthetase compare
AO356_03305 -1.3 -1.6 ATPase compare
AO356_11450 -1.3 -2.2 cytochrome C compare
AO356_10565 -1.2 -9.0 channel protein TolC compare
AO356_15320 -1.2 -6.0 lytic transglycosylase compare
AO356_02405 -1.2 -8.4 cytochrome C oxidase Cbb3 compare
AO356_00880 -1.2 -1.9 integration host factor subunit alpha compare
AO356_03420 -1.2 -5.2 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_26455 -1.2 -2.0 hypothetical protein compare
AO356_11090 -1.2 -2.4 aspartate ammonia-lyase compare
AO356_07495 -1.2 -2.8 molecular chaperone DnaJ compare
AO356_21165 -1.2 -5.0 macrolide ABC transporter ATP-binding protein compare
AO356_11040 -1.2 -9.7 phosphate ABC transporter permease compare
AO356_15200 -1.2 -5.2 hypothetical protein compare
AO356_17470 -1.2 -5.4 aminopeptidase compare
AO356_08205 -1.2 -3.3 ribosomal protein L11 methyltransferase compare
AO356_00170 -1.2 -2.7 lytic transglycosylase compare
AO356_16955 -1.2 -4.4 disulfide bond formation protein B compare
AO356_03595 -1.2 -1.6 carbon storage regulator compare
AO356_10570 -1.2 -10.8 large adhesive protein compare
AO356_17035 -1.2 -4.4 ATPase compare
AO356_08890 -1.2 -4.4 glycosyltransferase compare
AO356_05565 -1.2 -3.3 hypothetical protein compare
AO356_28695 -1.2 -2.5 IclR family transcriptional regulator compare
AO356_11035 -1.1 -6.4 phosphate ABC transporter permease compare
AO356_03270 -1.1 -2.0 terminase compare
AO356_18245 -1.1 -4.7 DeoR family transcriptional regulator compare
AO356_03365 -1.1 -2.6 UDP-N-acetylglucosamine 2-epimerase compare
AO356_03855 -1.1 -8.3 AAA family ATPase compare
AO356_12005 -1.1 -7.5 transcriptional regulator compare
AO356_24705 -1.1 -6.8 NAD-glutamate dehydrogenase compare
AO356_00995 -1.1 -3.1 carbon storage regulator CsrA compare
AO356_10150 -1.1 -3.7 RNA-binding protein compare
AO356_08910 -1.1 -2.5 carbamoyltransferase compare
AO356_18845 -1.1 -3.4 hypothetical protein compare
AO356_17485 -1.1 -3.5 elongation factor 4 compare
AO356_29175 -1.1 -2.7 chemotaxis protein compare
AO356_08325 -1.1 -2.9 predicted copper homeostasis protein (from data) compare
AO356_25535 -1.1 -1.7 hypothetical protein compare


Specific Phenotypes

For 13 genes in this experiment

For stress Cholin acetate in Pseudomonas fluorescens FW300-N2C3

For stress Cholin acetate across organisms