Experiment set5IT055 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium nitrite nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.3 -8.7 tetratricopeptide repeat protein compare
PFLU_RS01645 -6.2 -6.1 S41 family peptidase compare
PFLU_RS28645 -5.4 -18.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS14550 -5.4 -3.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28390 -5.0 -9.6 methionine biosynthesis protein MetW compare
PFLU_RS28385 -4.9 -11.4 homoserine O-acetyltransferase compare
PFLU_RS07640 -4.8 -8.1 universal stress protein compare
PFLU_RS29095 -4.7 -31.2 polyphosphate kinase 1 compare
PFLU_RS26545 -4.7 -15.4 sel1 repeat family protein compare
PFLU_RS06320 -4.7 -4.5 OmpH family outer membrane protein compare
PFLU_RS07650 -4.7 -15.8 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS28165 -4.7 -5.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23585 -4.7 -8.9 GntP family permease compare
PFLU_RS25760 -4.7 -10.8 glucose-6-phosphate isomerase compare
PFLU_RS01895 -4.6 -7.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22095 -4.6 -20.5 GTP diphosphokinase compare
PFLU_RS20580 -4.4 -13.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS21300 -4.4 -7.8 cysteine hydrolase compare
PFLU_RS20575 -4.4 -7.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS23590 -4.3 -3.2 gluconokinase compare
PFLU_RS20510 -4.3 -11.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24125 -4.3 -5.1 cold-shock protein compare
PFLU_RS20565 -4.3 -13.7 3-isopropylmalate dehydrogenase compare
PFLU_RS22105 -4.3 -3.0 cysteine synthase CysM compare
PFLU_RS25640 -4.3 -11.4 ketol-acid reductoisomerase compare
PFLU_RS27620 -4.3 -22.9 acyl-CoA dehydrogenase compare
PFLU_RS02490 -4.2 -13.2 phosphoserine phosphatase SerB compare
PFLU_RS28695 -4.2 -9.0 phosphoglycerate dehydrogenase compare
PFLU_RS28535 -4.2 -16.8 dihydroxy-acid dehydratase compare
PFLU_RS12975 -4.2 -5.0 DUF934 domain-containing protein compare
PFLU_RS29880 -4.2 -15.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS12980 -4.2 -7.4 nitrite/sulfite reductase compare
PFLU_RS24765 -4.1 -22.5 2-isopropylmalate synthase compare
PFLU_RS00180 -4.1 -7.9 tryptophan synthase subunit beta compare
PFLU_RS18505 -4.1 -7.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS29875 -4.1 -17.3 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS27370 -4.1 -13.5 anthranilate phosphoribosyltransferase compare
PFLU_RS04385 -4.1 -14.0 RNase adapter RapZ compare
PFLU_RS27440 -4.1 -8.2 nucleotidyltransferase family protein compare
PFLU_RS25750 -4.0 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS01620 -4.0 -9.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20540 -4.0 -12.2 phosphoribosylanthranilate isomerase compare
PFLU_RS23725 -3.9 -13.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS01605 -3.9 -11.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS22740 -3.9 -4.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS29885 -3.9 -13.6 LysR family transcriptional regulator compare
PFLU_RS21060 -3.9 -6.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS02365 -3.9 -16.8 glycosyltransferase compare
PFLU_RS02050 -3.9 -19.8 NAD(P)-binding protein compare
PFLU_RS22595 -3.8 -2.7 OmpA family protein compare
PFLU_RS24485 -3.8 -14.2 hypothetical protein compare
PFLU_RS02590 -3.8 -10.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25360 -3.8 -8.3 glutamate 5-kinase compare
PFLU_RS03770 -3.7 -16.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS26020 -3.7 -13.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS03405 -3.7 -12.9 carbonate dehydratase compare
PFLU_RS03765 -3.7 -12.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24330 -3.7 -6.1 phosphogluconate dehydratase compare
PFLU_RS04440 -3.7 -8.2 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS27365 -3.7 -11.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01610 -3.6 -13.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS08065 -3.6 -11.5 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS25755 -3.6 -3.5 pantoate--beta-alanine ligase compare
PFLU_RS01685 -3.6 -6.8 nitrogen regulation protein NR(I) compare
PFLU_RS04220 -3.5 -9.6 FadR family transcriptional regulator compare
PFLU_RS04435 -3.5 -6.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25225 -3.5 -12.9 disulfide bond formation protein B compare
PFLU_RS25735 -3.5 -8.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23305 -3.5 -12.8 arginine N-succinyltransferase compare
PFLU_RS26640 -3.5 -11.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS28655 -3.5 -15.6 HAD family hydrolase compare
PFLU_RS02045 -3.5 -24.7 glutamate synthase large subunit compare
PFLU_RS25715 -3.5 -11.3 RNA polymerase-binding protein DksA compare
PFLU_RS07695 -3.5 -5.2 beta-N-acetylhexosaminidase compare
PFLU_RS23070 -3.5 -2.0 50S ribosomal protein L32 compare
PFLU_RS08370 -3.4 -4.4 hypothetical protein compare
PFLU_RS26770 -3.4 -16.6 DedA family protein compare
PFLU_RS01900 -3.4 -10.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04470 -3.4 -14.1 histidinol dehydrogenase compare
PFLU_RS28965 -3.4 -12.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS09055 -3.4 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS08155 -3.3 -3.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS24325 -3.2 -16.5 glucokinase compare
PFLU_RS04465 -3.2 -11.8 ATP phosphoribosyltransferase compare
PFLU_RS01690 -3.2 -9.4 nitrogen regulation protein NR(II) compare
PFLU_RS08505 -3.2 -9.1 protease HtpX compare
PFLU_RS29515 -3.1 -14.5 RidA family protein compare
PFLU_RS21495 -3.1 -3.0 TlpA family protein disulfide reductase compare
PFLU_RS08410 -3.1 -8.5 HTH-type transcriptional regulator CysB compare
PFLU_RS25730 -3.1 -19.6 PAS domain S-box protein compare
PFLU_RS07785 -3.1 -12.1 VacJ family lipoprotein compare
PFLU_RS04430 -3.1 -9.3 ATP-binding cassette domain-containing protein compare
PFLU_RS00175 -3.1 -9.9 tryptophan synthase subunit alpha compare
PFLU_RS23310 -3.0 -11.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27445 -3.0 -16.9 phosphotransferase compare
PFLU_RS26735 -3.0 -12.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS04445 -3.0 -8.4 ABC transporter substrate-binding protein compare
PFLU_RS23220 -3.0 -3.4 tRNA-Arg compare
PFLU_RS21665 -2.9 -7.4 MinD/ParA family protein compare
PFLU_RS03665 -2.9 -7.0 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS31100 -2.9 -5.1 preprotein translocase subunit SecG compare
PFLU_RS02370 -2.9 -12.4 glycosyltransferase compare
PFLU_RS09980 -2.9 -19.2 peptidase S41 compare
PFLU_RS04070 -2.9 -7.0 peptide chain release factor 3 compare
PFLU_RS23065 -2.9 -12.0 phosphate acyltransferase PlsX compare
PFLU_RS01625 -2.8 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS06265 -2.8 -19.2 [protein-PII] uridylyltransferase compare
PFLU_RS03970 -2.8 -12.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS15410 -2.7 -2.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS20515 -2.7 -4.1 amidophosphoribosyltransferase compare
PFLU_RS04325 -2.7 -17.1 ribonuclease G compare
PFLU_RS24025 -2.7 -13.1 quinolinate synthase NadA compare
PFLU_RS23680 -2.7 -17.5 long-chain fatty acid--CoA ligase compare
PFLU_RS13540 -2.7 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS19175 -2.6 -10.1 trigger factor compare
PFLU_RS03980 -2.6 -9.9 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS00415 -2.5 -2.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS24085 -2.5 -4.1 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS24785 -2.4 -12.5 outer membrane protein assembly factor BamB compare
PFLU_RS18665 -2.4 -2.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS28650 -2.4 -8.4 RNA pyrophosphohydrolase compare
PFLU_RS18635 -2.4 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS24095 -2.4 -2.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS27305 -2.4 -7.8 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS01965 -2.4 -2.2 ATP-dependent protease subunit HslV compare
PFLU_RS13350 -2.3 -1.9 ParD-like family protein compare
PFLU_RS20625 -2.3 -3.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS01960 -2.3 -1.6 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS05385 -2.3 -14.9 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS08365 -2.3 -15.8 L,D-transpeptidase family protein compare
PFLU_RS08160 -2.3 -9.5 sugar transferase compare
PFLU_RS26595 -2.3 -2.2 lipoprotein compare
PFLU_RS30345 -2.2 -3.3 DUF2559 family protein compare
PFLU_RS19165 -2.2 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS18655 -2.2 -2.5 NADH-quinone oxidoreductase subunit J compare
PFLU_RS24790 -2.2 -6.2 tetratricopeptide repeat protein compare
PFLU_RS04150 -2.1 -6.3 DUF1043 family protein compare
PFLU_RS25920 -2.1 -4.3 outer membrane protein assembly factor BamE compare
PFLU_RS23920 -2.1 -2.5 septation protein A compare
PFLU_RS19170 -2.1 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24255 -2.1 -12.1 pyruvate kinase compare
PFLU_RS24205 -2.1 -2.0 DNA binding protein compare
PFLU_RS28325 -2.1 -8.4 energy transducer TonB compare
PFLU_RS27475 -2.1 -6.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS18395 -2.1 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS25645 -2.1 -1.4 acetolactate synthase small subunit compare
PFLU_RS30160 -2.0 -4.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS29760 -2.0 -11.8 phosphate ABC transporter permease PstA compare
PFLU_RS25670 -2.0 -14.0 bifunctional aminoglycoside phosphotransferase/ATP-binding protein compare
PFLU_RS24090 -2.0 -3.5 Holliday junction branch migration protein RuvA compare
PFLU_RS26905 -2.0 -9.4 transcriptional regulator NrdR compare
PFLU_RS00310 -2.0 -1.9 twin transmembrane helix small protein compare
PFLU_RS18640 -2.0 -4.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS18675 -2.0 -1.9 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS18615 -2.0 -2.8 NADH-quinone oxidoreductase subunit A compare
PFLU_RS05250 -1.9 -5.5 elongation factor 4 compare
PFLU_RS21360 -1.9 -2.5 MarR family transcriptional regulator compare
PFLU_RS24475 -1.9 -14.7 AmpG family muropeptide MFS transporter compare
PFLU_RS07225 -1.9 -12.8 L-aspartate oxidase compare
PFLU_RS25120 -1.9 -3.2 response regulator compare
PFLU_RS27630 -1.9 -5.5 dethiobiotin synthase compare
PFLU_RS18625 -1.9 -6.4 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS14820 -1.9 -5.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS26535 -1.9 -8.0 thiamine phosphate synthase compare
PFLU_RS06555 -1.9 -10.4 OmpA family protein compare
PFLU_RS29550 -1.8 -8.8 ATP-dependent DNA helicase RecG compare
PFLU_RS28725 -1.8 -10.5 DUF2059 domain-containing protein compare
PFLU_RS30165 -1.8 -8.8 ParA family protein compare
PFLU_RS04650 -1.8 -12.7 ABC transporter substrate-binding protein compare
PFLU_RS07255 -1.7 -4.6 sulfurtransferase TusA family protein compare
PFLU_RS22070 -1.7 -4.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS19720 -1.7 -2.3 hypothetical protein compare
PFLU_RS07655 -1.7 -5.8 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS18530 -1.7 -4.2 DNA translocase FtsK compare
PFLU_RS15610 -1.7 -5.6 helix-turn-helix transcriptional regulator compare
PFLU_RS22575 -1.7 -7.2 ANTAR domain-containing protein conserved
PFLU_RS05885 -1.7 -5.3 recombinase RecA compare
PFLU_RS29490 -1.7 -7.7 ribonuclease PH compare
PFLU_RS21965 -1.7 -11.6 transporter compare
PFLU_RS21740 -1.6 -5.8 Hpt domain-containing protein compare
PFLU_RS31590 -1.6 -1.6 hypothetical protein compare
PFLU_RS02460 -1.6 -9.7 alpha/beta fold hydrolase compare
PFLU_RS04140 -1.6 -2.1 response regulator transcription factor compare
PFLU_RS07805 -1.6 -11.8 transaldolase compare
PFLU_RS05585 -1.6 -4.2 MtnX-like HAD-IB family phosphatase compare
PFLU_RS28320 -1.6 -2.2 glutathione synthase compare
PFLU_RS29975 -1.6 -2.8 ATP-binding cassette domain-containing protein compare
PFLU_RS06055 -1.6 -1.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS03610 -1.6 -6.0 redox-regulated ATPase YchF compare
PFLU_RS07275 -1.6 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS02455 -1.6 -2.4 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS28420 -1.6 -6.5 thiazole synthase compare
PFLU_RS22835 -1.6 -8.0 amidotransferase compare
PFLU_RS23745 -1.6 -7.3 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS28665 -1.6 -11.3 threonine ammonia-lyase, biosynthetic compare
PFLU_RS05540 -1.6 -10.1 LysR family transcriptional regulator compare
PFLU_RS29310 -1.5 -1.6 accessory factor UbiK family protein compare
PFLU_RS20520 -1.5 -8.4 colicin V production protein CvpA compare
PFLU_RS26145 -1.5 -2.0 hypothetical protein compare
PFLU_RS26530 -1.5 -10.5 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms