Experiment set5IT051 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium tungstate dihydrate 0.05 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5704 -5.7 -5.6 Transcriptional regulatory protein PhoP compare
Pf6N2E2_773 -5.3 -5.2 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_5006 -5.1 -8.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_1273 -4.8 -4.7 Probable RND efflux membrane fusion protein compare
Pf6N2E2_3617 -4.6 -5.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5150 -4.6 -4.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5014 -4.3 -2.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2754 -4.2 -5.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_1634 -4.2 -5.7 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_3941 -4.1 -2.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3834 -4.0 -9.0 Lipoprotein NlpD compare
Pf6N2E2_1635 -3.9 -6.0 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_1087 -3.8 -8.4 Iron siderophore sensor protein compare
Pf6N2E2_3243 -3.7 -16.4 FIG067310: hypothetical protein compare
Pf6N2E2_1636 -3.7 -8.3 Ferrichrome-iron receptor compare
Pf6N2E2_4046 -3.7 -19.7 FIG00953482: hypothetical protein compare
Pf6N2E2_504 -3.7 -4.3 DNA-binding response regulator compare
Pf6N2E2_1271 -3.7 -12.8 Acriflavin resistance plasma membrane protein compare
Pf6N2E2_2825 -3.6 -2.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2755 -3.6 -2.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2574 -3.6 -2.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_5705 -3.6 -3.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1632 -3.6 -5.4 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_5342 -3.5 -4.1 21 kDa hemolysin precursor compare
Pf6N2E2_1633 -3.5 -4.3 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_3282 -3.5 -2.4 FIG005080: Possible exported protein compare
Pf6N2E2_2753 -3.3 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_1270 -3.2 -9.9 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf6N2E2_3301 -3.2 -14.1 ABC transporter, ATP-binding protein compare
Pf6N2E2_4585 -3.1 -14.1 Cell division protein FtsX compare
Pf6N2E2_5068 -3.1 -13.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5619 -3.1 -8.0 Putative two-component system sensor kinase compare
Pf6N2E2_5069 -3.1 -5.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5128 -3.0 -3.6 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_1626 -3.0 -7.8 Putative ATP-binding component of a transport system compare
Pf6N2E2_445 -3.0 -6.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5771 -3.0 -8.3 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1272 -3.0 -10.9 Acriflavin resistance plasma membrane protein conserved
Pf6N2E2_2340 -3.0 -4.9 Transcriptional regulator, GntR family compare
Pf6N2E2_3661 -2.9 -4.7 hypothetical protein compare
Pf6N2E2_3791 -2.7 -10.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4584 -2.7 -4.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2510 -2.7 -5.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2278 -2.7 -15.2 Transcription-repair coupling factor compare
Pf6N2E2_4187 -2.6 -5.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4045 -2.6 -2.6 FIG00953248: hypothetical protein compare
Pf6N2E2_5245 -2.6 -6.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4153 -2.5 -1.7 Sensory box histidine kinase compare
Pf6N2E2_3252 -2.5 -6.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4159 -2.4 -3.7 Cytochrome c4 compare
Pf6N2E2_156 -2.4 -2.7 Carbon storage regulator compare
Pf6N2E2_2823 -2.3 -5.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2313 -2.3 -4.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3285 -2.3 -4.0 Rod shape-determining protein MreD compare
Pf6N2E2_5621 -2.3 -5.1 DNA-binding response regulator compare
Pf6N2E2_1082 -2.3 -3.6 CopG protein compare
Pf6N2E2_2824 -2.2 -9.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3833 -2.2 -4.3 hypothetical protein compare
Pf6N2E2_2261 -2.2 -6.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_3271 -2.2 -3.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2200 -2.1 -1.9 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_144 -2.1 -14.8 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3942 -2.1 -10.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_1625 -2.1 -2.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_145 -2.1 -5.9 putative exported protein compare
Pf6N2E2_5001 -2.1 -1.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_292 -2.1 -7.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_2507 -2.0 -6.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3792 -2.0 -5.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5536 -2.0 -2.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5178 -1.9 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2508 -1.9 -3.9 hypothetical protein compare
Pf6N2E2_3658 -1.9 -6.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2506 -1.9 -11.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_122 -1.9 -2.6 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2274 -1.9 -5.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3260 -1.8 -4.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5316 -1.8 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5337 -1.8 -4.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5338 -1.8 -7.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_75 -1.7 -3.4 Colicin V production protein compare
Pf6N2E2_3835 -1.7 -2.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4991 -1.7 -5.5 DedA protein compare
Pf6N2E2_4451 -1.6 -5.6 FIG139438: lipoprotein B compare
Pf6N2E2_3635 -1.6 -3.2 FIG00953138: hypothetical protein compare
Pf6N2E2_5086 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_2311 -1.6 -5.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1676 -1.6 -1.8 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_4678 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_4556 -1.5 -2.5 FIG00953078: hypothetical protein compare
Pf6N2E2_3783 -1.5 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3521 -1.5 -7.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_405 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_1056 -1.5 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5346 -1.5 -2.8 rRNA small subunit methyltransferase I compare
Pf6N2E2_3839 -1.5 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5944 -1.5 -5.2 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4992 -1.5 -10.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf6N2E2_3257 -1.5 -2.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5956 -1.5 -4.8 FIG004453: protein YceG like compare
Pf6N2E2_2310 -1.4 -6.9 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3829 -1.4 -3.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_2318 -1.4 -6.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3251 -1.4 -7.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_464 -1.4 -2.7 Sensory histidine kinase QseC compare
Pf6N2E2_2869 -1.4 -1.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_756 -1.4 -3.9 hypothetical protein compare
Pf6N2E2_2513 -1.4 -3.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_927 -1.4 -3.2 (AJ250023) putative polyketide synthase compare
Pf6N2E2_3328 -1.4 -2.3 transcriptional regulator compare
Pf6N2E2_5339 -1.4 -5.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3634 -1.4 -1.9 Transporter compare
Pf6N2E2_841 -1.4 -2.8 hypothetical protein compare
Pf6N2E2_3179 -1.4 -1.9 FIG021952: putative membrane protein compare
Pf6N2E2_2317 -1.4 -3.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4453 -1.4 -9.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_451 -1.3 -2.1 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3655 -1.3 -8.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3253 -1.3 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5884 -1.3 -5.3 Sensor histidine kinase compare
Pf6N2E2_5160 -1.3 -2.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3303 -1.3 -2.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2527 -1.3 -3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3664 -1.3 -5.9 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5733 -1.3 -4.6 NLP/P60 family protein compare
Pf6N2E2_3782 -1.3 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5103 -1.2 -0.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4611 -1.2 -2.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2514 -1.2 -3.8 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_848 -1.2 -3.3 hypothetical protein compare
Pf6N2E2_4661 -1.2 -2.9 KluA regulatory protein compare
Pf6N2E2_2320 -1.2 -2.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3842 -1.2 -2.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3666 -1.2 -2.5 InaA protein compare
Pf6N2E2_2582 -1.2 -2.6 Flagellar motor switch protein FliN compare
Pf6N2E2_4044 -1.2 -3.3 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_40 -1.2 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3656 -1.2 -4.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_5155 -1.2 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4057 -1.2 -0.8 lipoprotein, putative compare
Pf6N2E2_4162 -1.2 -2.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_6057 -1.1 -2.2 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_1129 -1.1 -3.3 Sensor histidine kinase compare
Pf6N2E2_1169 -1.1 -2.0 TnpR protein compare
Pf6N2E2_766 -1.1 -2.7 Fap protein with C39 domain compare
Pf6N2E2_3461 -1.1 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_945 -1.1 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1499 -1.1 -1.6 ABC transporter amino acid-binding protein compare
Pf6N2E2_5097 -1.1 -2.8 FIG00953595: hypothetical protein compare
Pf6N2E2_3641 -1.1 -2.5 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_5328 -1.1 -2.0 FIG00958649: hypothetical protein compare
Pf6N2E2_2822 -1.1 -5.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_963 -1.1 -1.9 probable exported protein STY4558 compare
Pf6N2E2_2201 -1.1 -2.7 Transmembrane regulator protein PrtR compare
Pf6N2E2_3475 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_942 -1.1 -1.4 Mll6465 protein compare
Pf6N2E2_1340 -1.1 -2.0 major pilin protein fimA compare
Pf6N2E2_3151 -1.0 -3.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_819 -1.0 -2.0 Response regulator compare
Pf6N2E2_5261 -1.0 -1.2 FIG00956983: hypothetical protein compare
Pf6N2E2_4467 -1.0 -2.7 hypothetical protein compare
Pf6N2E2_5936 -1.0 -1.8 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_5647 -1.0 -3.8 Transcriptional regulator, TetR family compare
Pf6N2E2_4531 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3060 -1.0 -1.2 Outer membrane protein H precursor compare
Pf6N2E2_3258 -1.0 -2.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5476 -1.0 -2.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2181 -1.0 -1.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5663 -1.0 -2.6 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_3460 -1.0 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2628 -1.0 -3.3 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2912 -1.0 -1.0 FIG00954094: hypothetical protein compare
Pf6N2E2_2420 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_3607 -1.0 -4.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1596 -1.0 -1.6 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_4579 -1.0 -1.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5172 -1.0 -2.3 FOG: TPR repeat compare
Pf6N2E2_2080 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_5806 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_4433 -0.9 -4.5 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) compare
Pf6N2E2_2938 -0.9 -2.8 Outer membrane lipoprotein compare
Pf6N2E2_3516 -0.9 -1.7 Probable transmembrane protein compare
Pf6N2E2_2674 -0.9 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_5584 -0.9 -2.2 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_642 -0.9 -2.1 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_5527 -0.9 -1.5 Cold shock protein CspC compare
Pf6N2E2_3663 -0.9 -4.1 Glycosyl transferase compare
Pf6N2E2_4381 -0.9 -2.9 hypothetical protein compare
Pf6N2E2_1043 -0.9 -2.8 Transcriptional regulator, IclR family compare
Pf6N2E2_5455 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_127 -0.9 -1.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_855 -0.9 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_3940 -0.9 -4.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2752 -0.9 -4.4 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_652 -0.9 -2.4 General secretion pathway protein E compare
Pf6N2E2_3786 -0.9 -1.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_734 -0.9 -2.5 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2885 -0.9 -3.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1838 -0.9 -1.7 6-hexanolactone hydrolase compare
Pf6N2E2_3659 -0.9 -2.9 Protein fixF compare


Specific Phenotypes

For 22 genes in this experiment

For stress Sodium tungstate dihydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium tungstate dihydrate across organisms