Experiment set5IT050 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Fluorophosphate 0.125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_300 -5.4 -3.7 CrcB protein compare
Pf6N2E2_1040 -4.7 -3.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4584 -4.5 -4.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3617 -4.4 -5.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5703 -4.1 -5.5 outer membrane protein H1 compare
Pf6N2E2_2646 -4.0 -2.7 FIG00953416: hypothetical protein compare
Pf6N2E2_3941 -3.9 -2.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5647 -3.2 -6.1 Transcriptional regulator, TetR family compare
Pf6N2E2_3282 -3.2 -2.2 FIG005080: Possible exported protein compare
Pf6N2E2_2201 -3.1 -4.6 Transmembrane regulator protein PrtR compare
Pf6N2E2_156 -3.0 -2.8 Carbon storage regulator compare
Pf6N2E2_2340 -2.8 -5.2 Transcriptional regulator, GntR family compare
Pf6N2E2_5430 -2.8 -9.1 Transglycosylase, Slt family compare
Pf6N2E2_4993 -2.8 -2.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2274 -2.7 -5.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3834 -2.7 -7.4 Lipoprotein NlpD compare
Pf6N2E2_5261 -2.7 -1.7 FIG00956983: hypothetical protein compare
Pf6N2E2_4071 -2.6 -3.9 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4585 -2.5 -11.1 Cell division protein FtsX compare
Pf6N2E2_5014 -2.5 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4369 -2.3 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3634 -2.3 -2.5 Transporter compare
Pf6N2E2_1636 -2.3 -8.2 Ferrichrome-iron receptor compare
Pf6N2E2_2496 -2.2 -2.2 FIG00956575: hypothetical protein compare
Pf6N2E2_2261 -2.2 -5.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_4803 -2.1 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1632 -2.0 -4.3 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_5671 -2.0 -3.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_43 -2.0 -5.5 Histidine permease YuiF compare
Pf6N2E2_3791 -2.0 -7.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3841 -2.0 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5573 -2.0 -4.6 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_5320 -1.9 -5.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3260 -1.9 -4.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5956 -1.9 -5.9 FIG004453: protein YceG like compare
Pf6N2E2_3252 -1.8 -5.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5150 -1.8 -4.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2219 -1.8 -2.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5321 -1.8 -7.5 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_1056 -1.8 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3461 -1.8 -2.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2716 -1.7 -2.8 FIG00954793: hypothetical protein compare
Pf6N2E2_1450 -1.7 -1.7 FIG00960438: hypothetical protein compare
Pf6N2E2_40 -1.7 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2674 -1.7 -1.5 FIG00953856: hypothetical protein compare
Pf6N2E2_5761 -1.6 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_445 -1.6 -5.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5052 -1.6 -2.3 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_4372 -1.6 -4.3 FIG00460773: hypothetical protein compare
Pf6N2E2_3792 -1.6 -3.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2278 -1.6 -9.9 Transcription-repair coupling factor compare
Pf6N2E2_3243 -1.6 -10.0 FIG067310: hypothetical protein compare
Pf6N2E2_1625 -1.5 -3.1 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4921 -1.5 -3.1 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf6N2E2_4187 -1.5 -3.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5001 -1.5 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4153 -1.5 -1.4 Sensory box histidine kinase compare
Pf6N2E2_2384 -1.5 -3.1 CmpX compare
Pf6N2E2_1162 -1.5 -2.1 Transmembrane amino acid efflux protein compare
Pf6N2E2_1116 -1.5 -1.6 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_3833 -1.5 -3.7 hypothetical protein compare
Pf6N2E2_3251 -1.5 -5.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_623 -1.5 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_1705 -1.5 -1.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2549 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_4999 -1.4 -3.5 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2822 -1.4 -5.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2253 -1.4 -2.7 hypothetical protein compare
Pf6N2E2_5130 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_2755 -1.4 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3258 -1.4 -2.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2999 -1.4 -2.9 probable tail fiber assembly protein compare
Pf6N2E2_2180 -1.4 -2.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2064 -1.4 -3.4 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_2825 -1.4 -3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2001 -1.4 -4.3 Nuclease precursor (EC 3.1.30.2) compare
Pf6N2E2_5317 -1.4 -7.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_350 -1.3 -2.0 Gfa-like protein compare
Pf6N2E2_1634 -1.3 -4.0 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_5172 -1.3 -1.9 FOG: TPR repeat compare
Pf6N2E2_4599 -1.3 -2.6 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_3828 -1.3 -2.5 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_3666 -1.3 -2.6 InaA protein compare
Pf6N2E2_338 -1.3 -1.4 Transcriptional regulator, AraC family compare
Pf6N2E2_3521 -1.3 -6.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_5318 -1.3 -9.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3303 -1.3 -3.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3607 -1.3 -4.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_384 -1.3 -2.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2938 -1.3 -3.5 Outer membrane lipoprotein compare
Pf6N2E2_4046 -1.3 -8.9 FIG00953482: hypothetical protein compare
Pf6N2E2_945 -1.3 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_5319 -1.2 -4.6 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3300 -1.2 -2.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3727 -1.2 -2.4 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_1128 -1.2 -0.9 Two-component response regulator compare
Pf6N2E2_4733 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_5494 -1.2 -3.2 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_282 -1.2 -1.4 GNAT family acetyltransferase YjcF compare
Pf6N2E2_1577 -1.2 -2.4 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_2510 -1.2 -3.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5342 -1.2 -2.2 21 kDa hemolysin precursor compare
Pf6N2E2_5704 -1.1 -3.5 Transcriptional regulatory protein PhoP compare
Pf6N2E2_4148 -1.1 -3.4 Glutamate-aspartate carrier protein compare
Pf6N2E2_2574 -1.1 -1.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_2912 -1.1 -1.3 FIG00954094: hypothetical protein compare
Pf6N2E2_1838 -1.1 -2.3 6-hexanolactone hydrolase compare
Pf6N2E2_3534 -1.1 -1.8 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4276 -1.1 -3.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2586 -1.1 -1.9 Hpt domain protein compare
Pf6N2E2_3711 -1.1 -4.1 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf6N2E2_5746 -1.1 -2.2 Cobalamin synthase compare
Pf6N2E2_64 -1.1 -2.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_6099 -1.1 -1.1 tRNA-Glu-TTC compare
Pf6N2E2_5520 -1.1 -4.0 Sensory box histidine kinase compare
Pf6N2E2_638 -1.1 -1.1 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5716 -1.1 -4.5 Cytochrome c-type biogenesis protein ResA compare
Pf6N2E2_3330 -1.1 -4.5 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf6N2E2_5733 -1.1 -2.8 NLP/P60 family protein compare
Pf6N2E2_2964 -1.1 -2.3 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_5406 -1.1 -1.6 FIG00958224: hypothetical protein compare
Pf6N2E2_3240 -1.1 -1.1 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3610 -1.1 -3.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_622 -1.1 -2.6 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2861 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_2514 -1.0 -2.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4607 -1.0 -2.9 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_127 -1.0 -0.9 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3033 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_5245 -1.0 -4.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1548 -1.0 -2.8 Lactoylglutathione lyase compare
Pf6N2E2_4494 -1.0 -2.8 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_2218 -1.0 -2.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1834 -1.0 -1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_6045 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_2509 -1.0 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1633 -1.0 -1.8 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_3842 -1.0 -2.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1343 -1.0 -2.5 Transcriptional regulator compare
Pf6N2E2_3778 -1.0 -1.2 FIG00954300: hypothetical protein compare
Pf6N2E2_2513 -1.0 -1.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_851 -1.0 -2.9 Osmotically inducible protein Y precursor compare
Pf6N2E2_361 -1.0 -2.7 Peptide ABC transporter, permease protein compare
Pf6N2E2_3940 -1.0 -3.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_959 -1.0 -2.5 putative membrane protein compare
Pf6N2E2_4057 -1.0 -0.6 lipoprotein, putative compare
Pf6N2E2_5086 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_302 -1.0 -3.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_1391 -1.0 -1.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5455 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_2869 -0.9 -1.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_1288 -0.9 -1.4 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2420 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5785 -0.9 -1.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3807 -0.9 -2.2 Histidine utilization repressor compare
Pf6N2E2_3729 -0.9 -3.1 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_5435 -0.9 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_434 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_953 -0.9 -1.1 FIG00958851: hypothetical protein compare
Pf6N2E2_5069 -0.9 -2.7 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5544 -0.9 -3.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3710 -0.9 -3.8 3-oxoacyl-[ACP] synthase compare
Pf6N2E2_3839 -0.9 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1817 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_5103 -0.9 -0.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3257 -0.9 -1.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3253 -0.9 -2.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2834 -0.9 -2.8 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf6N2E2_3204 -0.9 -1.5 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2176 -0.9 -1.4 Amidases related to nicotinamidase compare
Pf6N2E2_1043 -0.9 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_757 -0.9 -3.2 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf6N2E2_3122 -0.9 -1.8 Chemotaxis signal transduction protein compare
Pf6N2E2_734 -0.9 -2.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5660 -0.9 -2.6 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
Pf6N2E2_3191 -0.9 -3.5 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_3720 -0.9 -1.9 FIG027190: Putative transmembrane protein compare
Pf6N2E2_2425 -0.9 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3432 -0.9 -2.0 Ais protein, putative compare
Pf6N2E2_2258 -0.9 -3.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2083 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_693 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_1246 -0.8 -1.7 FIG00961372: hypothetical protein compare
Pf6N2E2_3728 -0.8 -3.5 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf6N2E2_2472 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_6140 -0.8 -0.6 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1032 -0.8 -0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_4131 -0.8 -5.4 Sulfate permease compare
Pf6N2E2_1699 -0.8 -1.3 FIG00955832: hypothetical protein compare
Pf6N2E2_362 -0.8 -1.8 Dipeptide transport system permease protein dppC compare
Pf6N2E2_5780 -0.8 -4.3 Periplasmic protease compare
Pf6N2E2_5133 -0.8 -1.3 FIG00953980: hypothetical protein compare
Pf6N2E2_2789 -0.8 -2.8 L-lysine permease compare
Pf6N2E2_5641 -0.8 -3.5 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf6N2E2_5738 -0.8 -3.7 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_3229 -0.8 -1.4 Putative glutathione transporter, ATP-binding component compare
Pf6N2E2_624 -0.8 -2.2 hypothetical protein PA3071 compare
Pf6N2E2_5300 -0.8 -5.2 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2088 -0.8 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3157 -0.8 -3.2 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium Fluorophosphate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Fluorophosphate across organisms