Experiment set5IT049 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Fusidic acid sodium salt 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3938 +1.0 6.9 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_1860 +0.9 2.1 Transposase compare
Ga0059261_3569 +0.9 3.4 chaperone protein DnaJ compare
Ga0059261_2132 +0.9 3.4 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_1351 +0.9 7.5 signal peptide peptidase SppA, 67K type compare
Ga0059261_3937 +0.8 7.1 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_3939 +0.7 4.5 transcriptional regulator, TetR family compare
Ga0059261_1381 +0.7 3.6 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_1145 +0.7 2.0 flagella basal body P-ring formation protein FlgA compare
Ga0059261_2980 +0.6 6.0 Outer membrane protein compare
Ga0059261_1811 +0.6 2.6 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_3783 +0.6 3.8 hypothetical protein compare
Ga0059261_1500 +0.6 3.1 phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8) compare
Ga0059261_2680 +0.6 1.4 hypothetical protein compare
Ga0059261_2981 +0.6 5.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_4120 +0.6 1.4 Stress responsive A/B Barrel Domain compare
Ga0059261_3451 +0.6 1.6 hypothetical protein compare
Ga0059261_3928 +0.6 3.1 Predicted thioesterase compare
Ga0059261_3013 +0.6 2.3 transcriptional regulator, ArsR family compare
Ga0059261_1043 +0.5 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_0957 +0.5 1.7 Protein of unknown function (DUF2798) compare
Ga0059261_2086 +0.5 1.3 SAF-like compare
Ga0059261_2745 +0.5 4.3 Myo-inositol-1-phosphate synthase compare
Ga0059261_1214 +0.5 1.3 hypothetical protein compare
Ga0059261_1092 +0.5 0.9 flagellar motor switch protein FliN compare
Ga0059261_2118 +0.5 2.8 flagellar motor stator protein MotA compare
Ga0059261_2916 +0.5 2.6 P-type conjugative transfer protein TrbJ compare
Ga0059261_1652 +0.5 1.1 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_1380 +0.5 3.6 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2097 +0.5 2.3 Rod binding protein compare
Ga0059261_2130 +0.5 3.5 Uncharacterized conserved protein compare
Ga0059261_2125 +0.4 2.8 ATP-dependent helicase HrpB compare
Ga0059261_3083 +0.4 1.4 hypothetical protein compare
Ga0059261_0153 +0.4 2.2 Serine acetyltransferase compare
Ga0059261_1831 +0.4 1.1 hypothetical protein compare
Ga0059261_3026 +0.4 1.1 Cation efflux family compare
Ga0059261_3144 +0.4 1.0 Transcriptional regulator compare
Ga0059261_2325 +0.4 2.9 MerR HTH family regulatory protein compare
Ga0059261_3271 +0.4 0.8 arsenate reductase (glutaredoxin) compare
Ga0059261_0807 +0.4 2.0 RNA methyltransferase, RsmE family compare
Ga0059261_2309 +0.4 2.1 transcriptional regulator, LacI family compare
Ga0059261_2120 +0.4 1.2 hypothetical protein compare
Ga0059261_1772 +0.4 1.5 MobA/MobL family compare
Ga0059261_2126 +0.4 2.0 ETC complex I subunit conserved region compare
Ga0059261_4142 +0.4 2.2 hypothetical protein compare
Ga0059261_2084 +0.4 2.3 FlgN protein compare
Ga0059261_2471 +0.4 0.6 hypothetical protein compare
Ga0059261_2390 +0.4 2.6 hypothetical protein compare
Ga0059261_2109 +0.4 1.3 hypothetical protein compare
Ga0059261_2396 +0.4 2.2 hypothetical protein compare
Ga0059261_2115 +0.4 3.3 transcriptional regulator, TetR family compare
Ga0059261_0155 +0.4 3.1 peroxiredoxin compare
Ga0059261_3165 +0.4 2.1 PEP phosphonomutase and related enzymes compare
Ga0059261_1569 +0.4 1.3 Response regulator receiver domain compare
Ga0059261_1035 +0.4 0.8 hypothetical protein compare
Ga0059261_1707 +0.4 1.7 hypothetical protein compare
Ga0059261_1904 +0.4 1.2 Asparaginase compare
Ga0059261_0773 +0.4 1.2 Esterase/lipase compare
Ga0059261_0318 +0.4 2.4 CHAP domain compare
Ga0059261_2744 +0.4 3.0 CDP-alcohol phosphatidyltransferase compare
Ga0059261_0350 +0.4 2.6 Bacterial SH3 domain compare
Ga0059261_0747 +0.4 1.8 Protein of unknown function (DUF2975) compare
Ga0059261_3951 +0.4 2.8 Type II secretory pathway, component PulM compare
Ga0059261_0650 +0.4 0.9 Negative regulator of beta-lactamase expression compare
Ga0059261_0557 +0.4 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3957 +0.4 2.1 prepilin-type N-terminal cleavage/methylation domain compare
Ga0059261_1257 +0.4 2.5 Uncharacterized iron-regulated protein compare
Ga0059261_1499 +0.4 1.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ga0059261_2128 +0.4 1.6 Predicted membrane protein compare
Ga0059261_3498 +0.4 1.5 Iron-sulfur cluster assembly accessory protein compare
Ga0059261_2402 +0.4 2.8 phage portal protein, HK97 family compare
Ga0059261_2395 +0.3 1.8 hypothetical protein compare
Ga0059261_0062 +0.3 1.6 hypothetical protein compare
Ga0059261_2528 +0.3 1.9 Uncharacterized conserved protein compare
Ga0059261_2127 +0.3 2.3 NUDIX domain compare
Ga0059261_2117 +0.3 2.7 Transposase and inactivated derivatives compare
Ga0059261_1174 +0.3 1.7 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_3197 +0.3 2.0 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_0686 +0.3 2.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Ga0059261_0656 +0.3 1.4 Predicted dehydrogenases and related proteins compare
Ga0059261_3602 +0.3 1.3 Glutaredoxin, GrxC family compare
Ga0059261_0800 +0.3 2.8 Membrane-bound lytic murein transglycosylase compare
Ga0059261_1064 +0.3 1.3 Uncharacterized conserved protein compare
Ga0059261_2048 +0.3 2.3 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_1799 +0.3 1.1 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_4185 +0.3 1.0 hypothetical protein compare
Ga0059261_2350 +0.3 0.7 hypothetical protein compare
Ga0059261_2840 +0.3 1.2 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_3522 +0.3 1.6 Micrococcal nuclease (thermonuclease) homologs compare
Ga0059261_1071 +0.3 1.0 hypothetical protein compare
Ga0059261_3467 +0.3 1.8 Domain of unknown function (DUF4262) compare
Ga0059261_1730 +0.3 1.1 Surface presentation of antigens (SPOA) compare
Ga0059261_4196 +0.3 2.4 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_2448 +0.3 0.7 DNA protecting protein DprA compare
Ga0059261_3125 +0.3 0.9 Imidazoleglycerol-phosphate synthase compare
Ga0059261_2068 +0.3 1.7 hypothetical protein compare
Ga0059261_4011 +0.3 1.5 hypothetical protein compare
Ga0059261_0736 +0.3 1.3 Protein of unknown function (DUF2842) compare
Ga0059261_3085 +0.3 0.8 Predicted transcriptional regulators compare
Ga0059261_0726 +0.3 1.0 hypothetical protein compare
Ga0059261_2116 +0.3 2.5 Integrase compare
Ga0059261_1097 +0.3 1.6 Flagellar basal body protein compare
Ga0059261_1763 +0.3 1.7 hypothetical protein compare
Ga0059261_3345 +0.3 0.9 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_0988 +0.3 2.2 Uncharacterized FAD-dependent dehydrogenases compare
Ga0059261_2114 +0.3 2.8 Outer membrane receptor proteins, mostly Fe transport compare
Ga0059261_0812 +0.3 1.4 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_0586 +0.3 1.4 hypothetical protein compare
Ga0059261_3434 +0.3 2.1 Predicted ATPase compare
Ga0059261_2124 +0.3 1.8 hypothetical protein compare
Ga0059261_1407 +0.3 2.4 23S rRNA (adenine(2503)-C(2))-methyltransferase compare
Ga0059261_2466 +0.3 2.4 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_2134 +0.3 2.2 Beta-lactamase class C and other penicillin binding proteins compare
Ga0059261_0894 +0.3 1.3 hypothetical protein compare
Ga0059261_1403 +0.3 1.9 Predicted permeases compare
Ga0059261_0130 +0.3 2.1 Predicted lactoylglutathione lyase compare
Ga0059261_1273 +0.3 1.2 DnaJ domain compare
Ga0059261_2226 +0.3 2.6 Aspartate/tyrosine/aromatic aminotransferase compare
Ga0059261_3948 +0.3 0.9 type II secretion system protein H compare
Ga0059261_2352 +0.3 1.2 hypothetical protein compare
Ga0059261_2387 +0.3 2.1 HIRAN domain compare
Ga0059261_0439 +0.3 1.2 hypothetical protein compare
Ga0059261_0690 +0.3 0.9 Acetyltransferases compare
Ga0059261_2412 +0.3 2.3 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components compare
Ga0059261_2135 +0.3 2.1 Zn-dependent alcohol dehydrogenases compare
Ga0059261_2121 +0.3 1.9 hypothetical protein compare
Ga0059261_3990 +0.3 1.4 hypothetical protein compare
Ga0059261_0869 +0.3 1.6 Acyl-CoA thioesterase compare
Ga0059261_3701 +0.3 2.2 Pirin-related protein compare
Ga0059261_2112 +0.3 2.2 Transcriptional regulator compare
Ga0059261_1587 +0.3 1.4 hypothetical protein compare
Ga0059261_0750 +0.3 1.3 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
Ga0059261_1394 +0.3 1.8 putative efflux protein, MATE family compare
Ga0059261_2229 +0.3 0.9 Predicted transcriptional regulators compare
Ga0059261_1612 +0.3 0.7 hypothetical protein compare
Ga0059261_3082 +0.3 1.7 Prophage CP4-57 regulatory protein (AlpA) compare
Ga0059261_1545 +0.3 1.4 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_1286 +0.3 1.7 phasin family protein compare
Ga0059261_2058 +0.3 2.1 Flagellar capping protein compare
Ga0059261_0316 +0.3 1.4 hypothetical protein compare
Ga0059261_3100 +0.3 2.0 Sugar transferases involved in lipopolysaccharide synthesis compare
Ga0059261_3435 +0.3 1.9 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3412 +0.3 2.0 Predicted transmembrane transcriptional regulator (anti-sigma factor) compare
Ga0059261_3953 +0.3 2.1 Type II secretory pathway, component PulF compare
Ga0059261_2570 +0.3 0.8 Type IV secretory pathway, TrbD component compare
Ga0059261_0723 +0.3 0.9 hypothetical protein compare
Ga0059261_3784 +0.3 2.1 DNA mismatch repair protein MutS compare
Ga0059261_4124 +0.2 1.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_0612 +0.2 0.8 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3274 +0.2 1.7 Glyoxalase-like domain compare
Ga0059261_4204 +0.2 1.1 transcriptional regulator, TetR family compare
Ga0059261_3838 +0.2 1.4 Hemerythrin HHE cation binding domain compare
Ga0059261_2060 +0.2 1.6 flagellar biosynthetic protein FliR compare
Ga0059261_3203 +0.2 1.9 ABC-type multidrug transport system, permease component compare
Ga0059261_1713 +0.2 1.1 hypothetical protein compare
Ga0059261_2111 +0.2 2.2 Phosphodiesterase/alkaline phosphatase D compare
Ga0059261_0899 +0.2 1.8 hypothetical protein compare
Ga0059261_4058 +0.2 1.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_2938 +0.2 1.7 YnbE-like lipoprotein compare
Ga0059261_2529 +0.2 1.6 Predicted integral membrane protein compare
Ga0059261_3815 +0.2 1.2 hypothetical protein compare
Ga0059261_1828 +0.2 1.9 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Ga0059261_1310 +0.2 1.0 Predicted transcriptional regulators compare
Ga0059261_2419 +0.2 1.7 Glutathione S-transferase compare
Ga0059261_1234 +0.2 1.1 Transposase compare
Ga0059261_1406 +0.2 1.0 Acetyltransferase (GNAT) family compare
Ga0059261_2423 +0.2 2.2 Outer membrane protein V compare
Ga0059261_2429 +0.2 1.4 2'-5' RNA ligase superfamily compare
Ga0059261_3796 +0.2 1.6 Predicted transcriptional regulator compare
Ga0059261_2580 +0.2 1.6 transcriptional regulator, AlpA family compare
Ga0059261_3931 +0.2 1.7 Predicted membrane protein/domain compare
Ga0059261_3512 +0.2 0.6 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_1258 +0.2 2.2 TonB-dependent siderophore receptor compare
Ga0059261_2593 +0.2 0.9 hypothetical protein compare
Ga0059261_0673 +0.2 1.4 hypothetical protein compare
Ga0059261_2072 +0.2 1.5 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Ga0059261_0961 +0.2 1.5 hypothetical protein compare
Ga0059261_1044 +0.2 1.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Ga0059261_3950 +0.2 1.9 Type II secretion system (T2SS), protein L compare
Ga0059261_3949 +0.2 1.8 type II secretion system protein G compare
Ga0059261_2144 +0.2 1.1 thymidine kinase (EC 2.7.1.21) compare
Ga0059261_3952 +0.2 1.7 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Ga0059261_0692 +0.2 1.6 Predicted secreted protein compare
Ga0059261_1146 +0.2 1.1 Flagellar basal body L-ring protein compare
Ga0059261_0133 +0.2 1.1 GTP-binding protein HflX compare
Ga0059261_1279 +0.2 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_0444 +0.2 0.7 Heavy-metal resistance compare
Ga0059261_0794 +0.2 1.7 hypothetical protein compare
Ga0059261_0722 +0.2 1.4 L-aminopeptidase/D-esterase compare
Ga0059261_2113 +0.2 1.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_2408 +0.2 1.9 Acetyltransferases compare
Ga0059261_3999 +0.2 1.9 Putative salt-induced outer membrane protein compare
Ga0059261_3945 +0.2 1.6 type II secretion system protein D compare
Ga0059261_2389 +0.2 1.8 Predicted Co/Zn/Cd cation transporters compare
Ga0059261_2074 +0.2 1.6 Sigma-54 interaction domain/Bacterial regulatory protein, Fis family compare
Ga0059261_3562 +0.2 1.0 Glycosyltransferase compare
Ga0059261_0973 +0.2 1.0 hypothetical protein compare
Ga0059261_1051 +0.2 1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Ga0059261_3184 +0.2 1.5 Predicted methyltransferase compare
Ga0059261_3316 +0.2 1.4 hypothetical protein compare


Specific Phenotypes

For 13 genes in this experiment

For stress Fusidic acid sodium salt in Sphingomonas koreensis DSMZ 15582

For stress Fusidic acid sodium salt across organisms