Experiment set5IT048 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3460 -3.6 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3658 -3.2 -8.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3661 -3.0 -4.5 hypothetical protein compare
Pf6N2E2_5014 -2.8 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3941 -2.6 -3.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4369 -2.5 -2.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3659 -2.5 -5.2 Protein fixF compare
Pf6N2E2_2320 -2.4 -3.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2124 -2.3 -2.0 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2506 -2.3 -12.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2753 -2.2 -2.9 HtrA protease/chaperone protein compare
Pf6N2E2_3782 -2.2 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5527 -2.1 -2.8 Cold shock protein CspC compare
Pf6N2E2_5001 -2.1 -2.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3303 -2.1 -4.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5069 -2.0 -4.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2218 -2.0 -4.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2507 -2.0 -6.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2574 -2.0 -2.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_2127 -1.9 -5.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5068 -1.9 -9.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2508 -1.9 -4.1 hypothetical protein compare
Pf6N2E2_3252 -1.9 -6.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3264 -1.9 -3.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5339 -1.9 -6.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2274 -1.8 -5.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2510 -1.8 -4.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3792 -1.8 -6.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5150 -1.8 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3665 -1.7 -1.2 serine/threonine protein kinase compare
Pf6N2E2_2310 -1.7 -8.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5156 -1.7 -2.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4187 -1.7 -3.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2675 -1.7 -1.6 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4352 -1.6 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2126 -1.6 -5.1 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3842 -1.6 -4.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3253 -1.6 -5.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3261 -1.5 -4.0 hypothetical protein compare
Pf6N2E2_2217 -1.5 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2180 -1.5 -3.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3534 -1.5 -1.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2318 -1.5 -5.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2311 -1.5 -5.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5406 -1.4 -2.6 FIG00958224: hypothetical protein compare
Pf6N2E2_3770 -1.4 -2.2 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3260 -1.4 -4.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2487 -1.4 -1.4 FIG00956090: hypothetical protein compare
Pf6N2E2_2317 -1.4 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2509 -1.4 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3074 -1.4 -1.7 FIG00960973: hypothetical protein compare
Pf6N2E2_3841 -1.3 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2313 -1.3 -3.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3199 -1.3 -4.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5536 -1.3 -1.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5052 -1.3 -2.5 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_5338 -1.3 -6.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3908 -1.3 -4.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3839 -1.3 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3610 -1.3 -3.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5727 -1.3 -3.3 FIG00955360: hypothetical protein compare
Pf6N2E2_4367 -1.3 -2.6 hypothetical protein compare
Pf6N2E2_5006 -1.2 -5.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5155 -1.2 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2514 -1.2 -3.8 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2181 -1.2 -1.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5430 -1.2 -5.9 Transglycosylase, Slt family compare
Pf6N2E2_3461 -1.2 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_6140 -1.1 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3786 -1.1 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_5316 -1.1 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3834 -1.1 -5.1 Lipoprotein NlpD compare
Pf6N2E2_5523 -1.1 -3.7 Small-conductance mechanosensitive channel compare
Pf6N2E2_3270 -1.1 -3.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4153 -1.1 -1.2 Sensory box histidine kinase compare
Pf6N2E2_737 -1.1 -1.6 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_4372 -1.0 -3.7 FIG00460773: hypothetical protein compare
Pf6N2E2_600 -1.0 -2.3 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_5337 -1.0 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5252 -1.0 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_3258 -1.0 -2.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_942 -1.0 -1.7 Mll6465 protein compare
Pf6N2E2_3251 -1.0 -5.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4584 -1.0 -2.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3179 -1.0 -1.7 FIG021952: putative membrane protein compare
Pf6N2E2_4159 -1.0 -2.8 Cytochrome c4 compare
Pf6N2E2_2282 -1.0 -2.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4969 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_2309 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2755 -1.0 -1.4 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4762 -1.0 -2.5 Biotin synthesis protein BioH compare
Pf6N2E2_2513 -1.0 -3.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2938 -0.9 -3.0 Outer membrane lipoprotein compare
Pf6N2E2_2340 -0.9 -2.6 Transcriptional regulator, GntR family compare
Pf6N2E2_3791 -0.9 -4.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5219 -0.9 -4.2 FIG140336: TPR domain protein compare
Pf6N2E2_288 -0.9 -1.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4611 -0.9 -2.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5705 -0.9 -1.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4678 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_1560 -0.9 -2.1 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_4047 -0.9 -3.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2546 -0.9 -2.7 Carbon storage regulator compare
Pf6N2E2_4993 -0.9 -1.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_4362 -0.9 -1.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3373 -0.9 -2.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3940 -0.9 -4.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2261 -0.9 -3.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_4889 -0.9 -3.3 Putative transport protein compare
Pf6N2E2_2534 -0.9 -3.0 Cell division protein BolA compare
Pf6N2E2_3612 -0.9 -1.7 HflK protein compare
Pf6N2E2_2459 -0.8 -1.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_2912 -0.8 -1.1 FIG00954094: hypothetical protein compare
Pf6N2E2_2572 -0.8 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4454 -0.8 -3.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5392 -0.8 -2.5 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_2756 -0.8 -4.0 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_1626 -0.8 -3.4 Putative ATP-binding component of a transport system compare
Pf6N2E2_3192 -0.8 -2.9 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3569 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_3537 -0.8 -1.8 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_3833 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_2474 -0.8 -4.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3004 -0.8 -2.2 Prophage baseplate assembly protein V compare
Pf6N2E2_4162 -0.8 -1.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5780 -0.8 -4.6 Periplasmic protease compare
Pf6N2E2_4803 -0.8 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3847 -0.8 -2.4 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2501 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_855 -0.8 -2.5 Transcriptional regulator, IclR family compare
Pf6N2E2_1583 -0.8 -3.1 ABC-type protease/lipase transport system, ATPase and permease components compare
Pf6N2E2_5840 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_6063 -0.8 -4.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_1043 -0.8 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_719 -0.8 -0.9 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_5917 -0.8 -2.9 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
Pf6N2E2_4204 -0.8 -1.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2472 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_5487 -0.8 -2.4 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3521 -0.8 -4.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_4084 -0.8 -2.3 Transcriptional regulator compare
Pf6N2E2_3499 -0.8 -1.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_3607 -0.8 -3.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5576 -0.7 -2.6 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_3472 -0.7 -2.1 Probable short-chain dehydrogenase compare
Pf6N2E2_5733 -0.7 -2.5 NLP/P60 family protein compare
Pf6N2E2_4826 -0.7 -3.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_1391 -0.7 -2.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2746 -0.7 -3.0 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_4416 -0.7 -1.5 Tyrosine recombinase XerC compare
Pf6N2E2_2039 -0.7 -2.4 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_2059 -0.7 -1.7 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1821 -0.7 -1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_624 -0.7 -2.9 hypothetical protein PA3071 compare
Pf6N2E2_4638 -0.7 -1.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2384 -0.7 -2.3 CmpX compare
Pf6N2E2_2693 -0.7 -1.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_420 -0.7 -1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_572 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_1246 -0.7 -1.6 FIG00961372: hypothetical protein compare
Pf6N2E2_3081 -0.7 -3.4 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_5785 -0.7 -1.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5579 -0.7 -3.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_238 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_2219 -0.7 -0.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3300 -0.7 -1.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1649 -0.7 -2.6 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) compare
Pf6N2E2_1445 -0.7 -2.0 Glutathione S-transferase compare
Pf6N2E2_5605 -0.7 -1.8 FxsA protein compare
Pf6N2E2_946 -0.7 -1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2845 -0.7 -3.5 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_4556 -0.7 -2.1 FIG00953078: hypothetical protein compare
Pf6N2E2_482 -0.7 -1.3 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_4206 -0.7 -0.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_6061 -0.7 -3.7 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_1299 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5320 -0.7 -3.6 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3785 -0.7 -2.5 Twin-arginine translocation protein TatB compare
Pf6N2E2_2791 -0.7 -1.5 FIG00954883: hypothetical protein compare
Pf6N2E2_2252 -0.7 -2.4 NreA-like protein compare
Pf6N2E2_2717 -0.7 -1.9 putative cytoplasmic protein compare
Pf6N2E2_2986 -0.7 -1.7 Transcriptional regulator, LuxR family compare
Pf6N2E2_2825 -0.7 -1.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5843 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_2022 -0.7 -2.9 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_440 -0.6 -1.2 FIG00954920: hypothetical protein compare
Pf6N2E2_3338 -0.6 -1.2 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_3783 -0.6 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2788 -0.6 -1.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_5242 -0.6 -1.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2476 -0.6 -2.3 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_1201 -0.6 -2.8 hypothetical protein compare
Pf6N2E2_59 -0.6 -2.7 16 kDa heat shock protein A compare
Pf6N2E2_4680 -0.6 -2.1 HTH-type transcriptional regulator BetI compare
Pf6N2E2_2527 -0.6 -1.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1747 -0.6 -1.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3282 -0.6 -1.3 FIG005080: Possible exported protein compare
Pf6N2E2_4918 -0.6 -1.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3060 -0.6 -1.6 Outer membrane protein H precursor compare
Pf6N2E2_5746 -0.6 -1.6 Cobalamin synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments