Experiment set5IT048 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1408 -4.5 -5.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1307 -4.3 -4.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2547 -4.3 -4.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2486 -4.2 -4.0 hypothetical protein compare
Pf1N1B4_1831 -4.2 -14.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1533 -4.0 -12.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1534 -3.9 -24.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_15 -3.9 -6.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2880 -3.9 -15.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_6 -3.9 -7.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1624 -3.8 -11.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_742 -3.8 -11.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1627 -3.7 -6.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2548 -3.7 -10.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2112 -3.7 -18.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1626 -3.7 -9.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1611 -3.6 -6.3 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2545 -3.6 -17.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_4038 -3.5 -4.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1610 -3.4 -6.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1067 -3.4 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2282 -3.3 -12.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2303 -3.2 -15.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_12 -3.2 -9.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2384 -3.2 -13.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1013 -3.1 -12.4 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
Pf1N1B4_847 -3.1 -11.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2879 -3.1 -9.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1830 -3.1 -11.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_683 -3.0 -4.6 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_3833 -3.0 -10.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2338 -3.0 -11.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1590 -2.9 -7.1 Histidine utilization repressor compare
Pf1N1B4_762 -2.9 -8.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_5665 -2.9 -9.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1565 -2.8 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3518 -2.8 -3.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1733 -2.8 -11.3 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) compare
Pf1N1B4_58 -2.8 -8.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2939 -2.7 -7.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1315 -2.7 -9.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3081 -2.7 -20.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_350 -2.7 -9.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2147 -2.7 -6.3 Putrescine utilization regulator compare
Pf1N1B4_2935 -2.6 -3.9 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_2010 -2.6 -6.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1906 -2.6 -6.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4029 -2.6 -5.1 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5666 -2.6 -5.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2337 -2.6 -6.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2549 -2.6 -8.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_4030 -2.6 -3.3 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_2009 -2.5 -7.0 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2878 -2.5 -10.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1014 -2.5 -6.2 Serine transporter compare
Pf1N1B4_2858 -2.5 -12.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4040 -2.5 -4.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3812 -2.4 -12.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1475 -2.4 -5.8 FIG00962376: hypothetical protein compare
Pf1N1B4_1115 -2.4 -12.8 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_1012 -2.3 -5.5 Glycine cleavage system transcriptional activator conserved
Pf1N1B4_2011 -2.3 -9.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2488 -2.3 -9.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_3697 -2.3 -8.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1317 -2.2 -4.4 Sensor histidine kinase/response regulator compare
Pf1N1B4_1544 -2.2 -10.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1617 -2.2 -8.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1734 -2.2 -8.2 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf1N1B4_2280 -2.1 -11.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2487 -2.1 -8.3 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_106 -2.1 -4.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_27 -2.0 -6.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2377 -2.0 -7.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2491 -2.0 -4.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_652 -2.0 -11.2 Sensory box histidine kinase compare
Pf1N1B4_2490 -2.0 -7.9 Biotin synthesis protein BioC compare
Pf1N1B4_600 -1.8 -7.4 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_2969 -1.8 -10.1 ATPase, AFG1 family compare
Pf1N1B4_1625 -1.8 -3.3 FIG00956267: hypothetical protein compare
Pf1N1B4_2144 -1.8 -8.0 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_2208 -1.7 -7.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_594 -1.7 -7.1 Glucose ABC transport system, inner membrane component 2 compare
Pf1N1B4_1535 -1.7 -3.9 hypothetical protein compare
Pf1N1B4_4039 -1.7 -6.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4028 -1.6 -3.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2225 -1.6 -10.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_4560 -1.6 -3.8 Transcriptional regulator, MerR family compare
Pf1N1B4_4065 -1.6 -7.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3779 -1.6 -4.0 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_4612 -1.6 -3.3 FIG00954117: hypothetical protein compare
Pf1N1B4_598 -1.6 -5.4 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_596 -1.6 -4.6 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_262 -1.5 -12.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_1180 -1.5 -3.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_3506 -1.5 -7.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_3168 -1.5 -2.7 AmpG permease compare
Pf1N1B4_1566 -1.5 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5659 -1.5 -9.4 NfuA Fe-S protein maturation compare
Pf1N1B4_4035 -1.5 -2.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_4678 -1.4 -5.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_1403 -1.4 -7.5 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1116 -1.4 -8.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_2526 -1.4 -10.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_595 -1.3 -7.4 Glucose ABC transport system, inner membrane component 1 compare
Pf1N1B4_3006 -1.3 -5.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_4299 -1.2 -3.6 sensor histidine kinase compare
Pf1N1B4_3451 -1.2 -4.1 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_593 -1.2 -5.0 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf1N1B4_2167 -1.2 -6.4 Ammonium transporter compare
Pf1N1B4_718 -1.2 -6.0 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_386 -1.2 -8.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) conserved
Pf1N1B4_65 -1.1 -5.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_2724 -1.1 -5.7 Transcriptional regulator, AsnC family compare
Pf1N1B4_3751 -1.1 -2.4 FIG00953060: hypothetical protein compare
Pf1N1B4_619 -1.1 -2.5 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_2177 -1.1 -1.7 FIG00953342: hypothetical protein compare
Pf1N1B4_578 -1.1 -3.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2885 -1.1 -4.0 Paraquat-inducible protein A compare
Pf1N1B4_4041 -1.1 -2.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2283 -1.1 -2.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1262 -1.0 -5.2 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_2706 -1.0 -3.2 FIG00954871: hypothetical protein compare
Pf1N1B4_1619 -1.0 -8.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2886 -1.0 -7.6 Paraquat-inducible protein B compare
Pf1N1B4_2621 -1.0 -1.8 PspA/IM30 family protein compare
Pf1N1B4_4866 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_2489 -1.0 -2.9 Biotin synthesis protein BioH compare
Pf1N1B4_3325 -1.0 -1.9 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1568 -1.0 -3.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_2959 -1.0 -4.6 FIG067310: hypothetical protein compare
Pf1N1B4_2856 -1.0 -3.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_802 -1.0 -2.9 Membrane carboxypeptidase (penicillin-binding protein) compare
Pf1N1B4_387 -0.9 -2.9 hypothetical protein compare
Pf1N1B4_4728 -0.9 -4.2 Na+/H+ antiporter NhaB compare
Pf1N1B4_5330 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_2857 -0.9 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1750 -0.9 -1.7 Death on curing protein, Doc toxin compare
Pf1N1B4_2339 -0.9 -2.0 COG1872 compare
Pf1N1B4_3713 -0.9 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_3445 -0.9 -2.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_3907 -0.9 -2.4 FIG00953287: hypothetical protein compare
Pf1N1B4_275 -0.9 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2859 -0.9 -6.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3729 -0.9 -1.9 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_3468 -0.9 -2.1 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2870 -0.9 -2.0 Regulator of competence-specific genes compare
Pf1N1B4_2940 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_3361 -0.9 -6.3 Outer membrane receptor proteins, likely involved in siderophore uptake @ TonB-dependent siderophore receptor compare
Pf1N1B4_648 -0.9 -8.0 Outer membrane porin, OprD family compare
Pf1N1B4_2171 -0.9 -3.2 Tyrosine recombinase XerC compare
Pf1N1B4_1263 -0.9 -2.6 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_2850 -0.9 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1094 -0.8 -2.6 FIG005080: Possible exported protein compare
Pf1N1B4_647 -0.8 -4.4 hypothetical protein compare
Pf1N1B4_5769 -0.8 -2.3 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_1153 -0.8 -1.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_3742 -0.8 -1.9 Oxidoreductase, zinc-binding compare
Pf1N1B4_2552 -0.8 -2.7 OsmC/Ohr family protein compare
Pf1N1B4_3783 -0.8 -3.0 FIG00958237: hypothetical protein compare
Pf1N1B4_767 -0.8 -3.8 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_763 -0.8 -2.8 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_4561 -0.8 -3.1 Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) compare
Pf1N1B4_1837 -0.8 -1.6 Osmotically inducible protein C compare
Pf1N1B4_4857 -0.8 -3.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_101 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_6024 -0.8 -1.7 FIG00953292: hypothetical protein compare
Pf1N1B4_3111 -0.8 -2.1 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_2479 -0.8 -2.4 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_2884 -0.8 -3.5 Paraquat-inducible protein A compare
Pf1N1B4_2695 -0.8 -1.6 Rare lipoprotein A precursor compare
Pf1N1B4_4550 -0.8 -1.5 beta-ketoacyl synthase, putative compare
Pf1N1B4_4558 -0.8 -2.3 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_5690 -0.8 -2.9 Putative TEGT family carrier/transport protein compare
Pf1N1B4_1993 -0.8 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_257 -0.8 -3.6 sensor histidine kinase/response regulator compare
Pf1N1B4_644 -0.8 -2.1 Cold shock protein CspC compare
Pf1N1B4_4551 -0.8 -1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_2233 -0.8 -4.4 Ferric iron ABC transporter, permease protein compare
Pf1N1B4_622 -0.8 -5.3 L-serine dehydratase (EC 4.3.1.17) compare
Pf1N1B4_5639 -0.8 -3.2 D-serine deaminase (EC 4.3.1.18) compare
Pf1N1B4_5923 -0.8 -2.4 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_13 -0.7 -2.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_932 -0.7 -0.9 FIG00963370: hypothetical protein compare
Pf1N1B4_1593 -0.7 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2527 -0.7 -5.1 ApaG protein compare
Pf1N1B4_1 -0.7 -1.8 Colicin V production protein compare
Pf1N1B4_1026 -0.7 -3.5 Transcriptional regulator, IclR family compare
Pf1N1B4_3871 -0.7 -6.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1039 -0.7 -3.2 putative membrane protein compare
Pf1N1B4_4051 -0.7 -2.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_1586 -0.7 -5.1 Purine-cytosine permease compare
Pf1N1B4_1057 -0.7 -1.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2425 -0.7 -3.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_3685 -0.7 -3.0 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_1878 -0.7 -4.9 Cytochrome c4 compare
Pf1N1B4_717 -0.7 -4.1 Iron-regulated protein A precursor compare
Pf1N1B4_1835 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_899 -0.7 -1.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_4833 -0.7 -2.4 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1569 -0.7 -5.4 Twin-arginine translocation protein TatC compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Serine in Pseudomonas fluorescens FW300-N1B4

For nitrogen source L-Serine across organisms