Experiment set5IT048 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_07350 -3.8 -1.0 hypothetical protein compare
IAI47_14470 -3.7 -2.4 YbaB/EbfC family nucleoid-associated protein compare
IAI47_07475 -3.4 -1.2 hypothetical protein compare
IAI47_05420 -3.4 -1.5 PTS glucose transporter subunit IIA compare
IAI47_20600 -3.4 -2.4 hypothetical protein compare
IAI47_07930 -3.3 -1.8 DUF2158 domain-containing protein compare
IAI47_09580 -3.3 -4.0 FNR family transcription factor compare
IAI47_16390 -3.2 -0.8 tRNA-Leu compare
IAI47_12790 -3.1 -0.8 chromosome partition protein MukE compare
IAI47_17560 -3.1 -1.7 ROK family transcriptional regulator compare
IAI47_18240 -2.9 -2.8 NAD(P)H-flavin reductase compare
IAI47_07020 -2.9 -1.5 hypothetical protein compare
IAI47_11515 -2.8 -1.9 hypothetical protein compare
IAI47_09360 -2.7 -1.4 peptide ABC transporter ATP-binding protein SapF compare
IAI47_15600 -2.7 -2.5 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_15485 -2.7 -1.1 molecular chaperone Skp compare
IAI47_13690 -2.7 -0.7 cell envelope integrity protein TolA compare
IAI47_13695 -2.7 -0.7 colicin uptake protein TolR compare
IAI47_02345 -2.6 -0.9 5S ribosomal RNA compare
IAI47_17035 -2.5 -1.7 ribosome maturation factor RimP compare
IAI47_17120 -2.4 -3.4 BolA family iron metabolism protein IbaG compare
IAI47_08085 -2.4 -6.1 helix-turn-helix domain-containing protein compare
IAI47_13750 -2.3 -4.1 succinate dehydrogenase iron-sulfur subunit compare
IAI47_13885 -2.3 -1.4 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_08045 -2.3 -2.2 NUDIX domain-containing protein compare
IAI47_06655 -2.3 -4.6 1-phosphofructokinase compare
IAI47_06360 -2.3 -1.5 NADH-quinone oxidoreductase subunit A compare
IAI47_11760 -2.3 -1.3 TonB-dependent siderophore receptor compare
IAI47_17020 -2.3 -1.5 30S ribosome-binding factor RbfA compare
IAI47_15005 -2.3 -2.1 hypothetical protein compare
IAI47_04300 -2.2 -7.3 recombinase RecA compare
IAI47_16995 -2.1 -1.9 protein YrbN compare
IAI47_07165 -2.1 -1.8 exodeoxyribonuclease I compare
IAI47_00875 -2.0 -1.9 met regulon transcriptional regulator MetJ compare
IAI47_13180 -2.0 -5.2 manganese-binding transcriptional regulator MntR compare
IAI47_13745 -2.0 -3.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_06325 -2.0 -6.2 acetate kinase compare
IAI47_10775 -1.9 -5.0 ribonuclease T compare
IAI47_12645 -1.9 -3.5 porin OmpA compare
IAI47_15635 -1.9 -1.9 RNA polymerase-binding protein DksA compare
IAI47_06390 -1.9 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_00300 -1.9 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_06410 -1.8 -5.1 NADH-quinone oxidoreductase subunit L compare
IAI47_05195 -1.8 -2.2 DnaA inactivator Hda compare
IAI47_20995 -1.8 -2.9 hypothetical protein compare
IAI47_12060 -1.8 -3.6 beta-ketoacyl-ACP synthase II compare
IAI47_06385 -1.8 -3.3 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_04400 -1.8 -4.0 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_04425 -1.8 -6.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_06320 -1.8 -5.9 phosphate acetyltransferase compare
IAI47_00760 -1.8 -3.0 envelope stress response regulator transcription factor CpxR compare
IAI47_04870 -1.7 -5.4 elongation factor 4 compare
IAI47_02515 -1.7 -4.7 transcriptional regulator ArgR compare
IAI47_13765 -1.7 -2.0 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_09055 -1.6 -8.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_08850 -1.6 -3.5 septum site-determining protein MinD compare
IAI47_07760 -1.6 -3.8 phosphonate C-P lyase system protein PhnH compare
IAI47_14700 -1.6 -6.0 protoheme IX farnesyltransferase compare
IAI47_12880 -1.6 -10.0 formate C-acetyltransferase compare
IAI47_02400 -1.5 -1.2 YhdT family protein compare
IAI47_19035 -1.5 -1.9 transcriptional regulator compare
IAI47_00780 -1.5 -3.7 6-phosphofructokinase compare
IAI47_11375 -1.5 -1.0 hypothetical protein compare
IAI47_02350 -1.5 -0.8 tRNA-Thr compare
IAI47_19710 -1.5 -2.5 helix-turn-helix transcriptional regulator compare
IAI47_08440 -1.5 -1.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_04800 -1.5 -0.8 RnfH family protein compare
IAI47_02090 -1.4 -3.2 elongation factor Tu compare
IAI47_15810 -1.4 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_09235 -1.4 -1.0 type I DNA topoisomerase compare
IAI47_03235 -1.4 -4.2 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_00430 -1.4 -7.9 DNA polymerase I compare
IAI47_03240 -1.4 -3.1 TonB system transport protein ExbD compare
IAI47_20850 -1.4 -3.2 TetR/AcrR family transcriptional regulator compare
IAI47_18215 -1.3 -1.0 Trk system potassium transporter TrkH compare
IAI47_01365 -1.3 -0.9 inorganic phosphate transporter PitA compare
IAI47_09240 -1.3 -2.1 HTH-type transcriptional regulator CysB compare
IAI47_00730 -1.3 -1.7 glutaredoxin 3 compare
IAI47_02585 -1.3 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_10755 -1.3 -0.9 DUF1289 domain-containing protein compare
IAI47_03375 -1.3 -6.1 peptide chain release factor 3 compare
IAI47_14295 -1.3 -2.3 hypothetical protein compare
IAI47_17965 -1.3 -5.9 glucose-6-phosphate isomerase compare
IAI47_06900 -1.3 -2.3 phosphatase PAP2 family protein compare
IAI47_12930 -1.2 -2.3 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_11415 -1.2 -1.0 hypothetical protein compare
IAI47_13195 -1.2 -4.9 DNA starvation/stationary phase protection protein Dps compare
IAI47_13740 -1.2 -0.9 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_06450 -1.2 -2.9 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_08455 -1.2 -4.9 zinc ABC transporter permease subunit ZnuB compare
IAI47_08730 -1.2 -2.8 YebO family protein compare
IAI47_18055 -1.2 -3.1 DNA-binding protein HU-alpha compare
IAI47_04865 -1.2 -1.7 SoxR-reducing system protein RseC compare
IAI47_12865 -1.2 -5.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_12885 -1.2 -3.8 pyruvate formate lyase 1-activating protein compare
IAI47_14980 -1.2 -2.4 hypothetical protein compare
IAI47_10270 -1.2 -2.6 benzoate/H(+) symporter BenE family transporter compare
IAI47_11845 -1.1 -2.0 hypothetical protein compare
IAI47_05705 -1.1 -2.8 DNA polymerase III subunit theta compare
IAI47_05065 -1.1 -2.4 YfgM family protein compare
IAI47_03680 -1.1 -5.9 transketolase compare
IAI47_16085 -1.1 -1.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_19550 -1.1 -1.1 DUF1471 domain-containing protein compare
IAI47_11150 -1.1 -2.1 D-threitol dehydrogenase compare
IAI47_10340 -1.1 -3.4 mannose-6-phosphate isomerase compare
IAI47_15895 -1.1 -1.2 secA regulator SecM compare
IAI47_05295 -1.1 -3.1 YpfN family protein compare
IAI47_03805 -1.1 -3.6 FAD assembly factor SdhE compare
IAI47_19050 -1.1 -2.0 hypothetical protein compare
IAI47_05745 -1.1 -1.2 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_03630 -1.1 -2.5 SprT family zinc-dependent metalloprotease compare
IAI47_08450 -1.1 -1.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_15980 -1.1 -5.0 catabolite repressor/activator compare
IAI47_17185 -1.1 -3.1 RNA polymerase factor sigma-54 compare
IAI47_15140 -1.1 -3.6 xanthine phosphoribosyltransferase compare
IAI47_09395 -1.1 -1.3 phage shock protein PspA compare
IAI47_09400 -1.0 -2.0 envelope stress response membrane protein PspB compare
IAI47_06365 -1.0 -2.3 NADH-quinone oxidoreductase subunit B compare
IAI47_06405 -1.0 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_06980 -1.0 -2.4 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_13475 -1.0 -2.0 molybdopterin synthase catalytic subunit MoaE compare
IAI47_04835 -1.0 -4.6 ATP-dependent RNA helicase SrmB compare
IAI47_11450 -1.0 -3.2 ankyrin repeat domain-containing protein compare
IAI47_07480 -1.0 -1.4 hypothetical protein compare
IAI47_06420 -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_10290 -1.0 -3.1 barstar family protein compare
IAI47_09210 -1.0 -3.4 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_07800 -1.0 -2.8 phosphonate ABC transporter ATP-binding protein compare
IAI47_04450 -1.0 -1.6 tRNA-Ala compare
IAI47_16095 -1.0 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_05670 -1.0 -2.3 AlpA family transcriptional regulator compare
IAI47_18400 -1.0 -1.3 tyrosine recombinase XerC compare
IAI47_08305 -1.0 -2.9 chemotaxis protein CheW compare
IAI47_11310 -0.9 -2.1 redox-regulated ATPase YchF compare
IAI47_13545 -0.9 -4.2 6-phosphogluconolactonase compare
IAI47_07055 -0.9 -1.6 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_09320 -0.9 -4.3 exoribonuclease II compare
IAI47_16410 -0.9 -2.4 YbaK/EbsC family protein compare
IAI47_13755 -0.9 -3.8 succinate dehydrogenase flavoprotein subunit compare
IAI47_00940 -0.9 -4.4 HTH-type transcriptional repressor FabR compare
IAI47_08335 -0.9 -2.8 chemotaxis response regulator CheY compare
IAI47_09195 -0.9 -3.3 PHP domain-containing protein compare
IAI47_18410 -0.9 -2.1 diaminopimelate epimerase compare
IAI47_08580 -0.9 -3.3 DUF1493 family protein compare
IAI47_07010 -0.9 -1.0 ABC transporter permease compare
IAI47_12720 -0.9 -2.7 NADPH-dependent FMN reductase compare
IAI47_10115 -0.8 -1.9 hypothetical protein compare
IAI47_10225 -0.8 -1.9 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_11475 -0.8 -0.7 hypothetical protein compare
IAI47_03705 -0.8 -3.4 arginine exporter ArgO compare
IAI47_09955 -0.8 -1.9 SDR family oxidoreductase compare
IAI47_03745 -0.8 -3.1 YecA family protein compare
IAI47_09300 -0.8 -2.9 crotonase/enoyl-CoA hydratase family protein compare
IAI47_00935 -0.8 -3.0 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_12655 -0.8 -4.4 Lon protease family protein compare
IAI47_11500 -0.8 -1.1 type VI secretion system tip protein VgrG compare
IAI47_14695 -0.8 -2.4 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_02685 -0.8 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_08465 -0.8 -3.1 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_19950 -0.8 -4.1 SDR family oxidoreductase compare
IAI47_00870 -0.8 -0.4 50S ribosomal protein L31 compare
IAI47_03665 -0.8 -2.7 agmatinase compare
IAI47_06475 -0.8 -2.9 transcriptional regulator RcsB compare
IAI47_07645 -0.8 -3.8 Lrp/AsnC family transcriptional regulator compare
IAI47_13840 -0.8 -1.8 replication initiation negative regulator SeqA compare
IAI47_18675 -0.8 -2.9 MarR family transcriptional regulator compare
IAI47_21730 -0.8 -2.3 hypothetical protein compare
IAI47_19675 -0.8 -1.5 ParD-like family protein compare
IAI47_14750 -0.8 -2.3 phosphatidylglycerophosphatase A compare
IAI47_06550 -0.8 -2.1 hypothetical protein compare
IAI47_14945 -0.8 -1.3 pyrroline-5-carboxylate reductase compare
IAI47_13140 -0.8 -4.0 molybdopterin molybdotransferase MoeA compare
IAI47_16840 -0.8 -3.1 carbamate kinase compare
IAI47_20550 -0.8 -1.9 ABC transporter permease compare
IAI47_04950 -0.8 -3.3 nitrogen regulatory protein P-II compare
IAI47_10835 -0.8 -0.4 tRNA-Val compare
IAI47_03465 -0.8 -2.9 helix-turn-helix transcriptional regulator compare
IAI47_16670 -0.8 -2.0 stress protein compare
IAI47_14545 -0.8 -2.0 hypothetical protein compare
IAI47_19890 -0.8 -0.8 hypothetical protein compare
IAI47_16845 -0.8 -3.2 ornithine carbamoyltransferase compare
IAI47_18405 -0.8 -2.1 DUF484 domain-containing protein compare
IAI47_04485 -0.8 -2.6 thioredoxin TrxC compare
IAI47_08300 -0.8 -4.1 chemotaxis protein CheA compare
IAI47_05425 -0.8 -1.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_15595 -0.8 -0.6 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_21345 -0.7 -2.7 DUF1471 domain-containing protein compare
IAI47_09550 -0.7 -1.9 hypothetical protein compare
IAI47_07880 -0.7 -2.2 hypothetical protein compare
IAI47_08680 -0.7 -2.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_03135 -0.7 -2.5 outer membrane channel protein TolC compare
IAI47_10470 -0.7 -0.7 electron transport complex subunit E compare
IAI47_08855 -0.7 -2.2 septum site-determining protein MinC compare
IAI47_10740 -0.7 -2.6 hypothetical protein compare
IAI47_13760 -0.7 -1.5 succinate dehydrogenase membrane anchor subunit compare
IAI47_19805 -0.7 -2.8 TIM barrel protein compare
IAI47_21665 -0.7 -0.9 DUF333 domain-containing protein compare
IAI47_12140 -0.7 -3.2 flagellar basal-body rod protein FlgG compare
IAI47_17785 -0.7 -5.2 oligosaccharide flippase family protein compare
IAI47_16950 -0.7 -1.8 GIY-YIG nuclease family protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms